Wall clock time and date at job start Mon Mar 30 2020 06:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.46778 * 2 1 4 4 H 1.09002 * 110.43542 * 54.30053 * 3 2 1 5 5 C 1.54891 * 110.48666 * 291.75728 * 3 2 1 6 6 C 1.54892 * 102.74959 * 203.25066 * 5 3 2 7 7 C 1.54264 * 104.19651 * 37.93955 * 6 5 3 8 8 H 1.09009 * 110.02966 * 95.67570 * 7 6 5 9 9 C 1.50694 * 110.03766 * 217.05724 * 7 6 5 10 10 N 1.29946 * 126.28554 * 58.56783 * 9 7 6 11 11 O 1.21296 * 110.25390 * 179.97438 * 10 9 7 12 12 C 1.33642 * 109.81004 * 0.02562 * 11 10 9 13 13 C 1.50697 * 126.55239 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47334 * 270.02567 * 13 12 11 15 15 C 1.50697 * 109.47334 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00360 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00269 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99474 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00281 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47648 * 59.99563 * 19 17 15 21 21 H 1.48501 * 109.47275 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47206 * 299.99616 * 19 17 15 23 23 N 1.31129 * 106.89502 * 359.76451 * 12 11 10 24 24 C 1.54224 * 106.63737 * 336.40572 * 7 6 5 25 25 H 1.09001 * 109.46755 * 300.00008 * 1 2 3 26 26 H 1.08998 * 109.46841 * 59.99940 * 1 2 3 27 27 H 1.08998 * 109.46720 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46998 * 240.00507 * 2 1 3 29 29 H 1.08994 * 109.47206 * 119.99751 * 2 1 3 30 30 H 1.09000 * 110.75322 * 321.56340 * 5 3 2 31 31 H 1.09002 * 110.75336 * 84.74891 * 5 3 2 32 32 H 1.08993 * 110.48715 * 156.62375 * 6 5 3 33 33 H 1.09001 * 110.48596 * 279.13315 * 6 5 3 34 34 H 1.09005 * 109.47382 * 30.02622 * 13 12 11 35 35 H 1.09005 * 109.47384 * 150.02145 * 13 12 11 36 36 H 1.08999 * 109.46735 * 299.99931 * 14 13 12 37 37 H 1.08999 * 109.47029 * 59.99892 * 14 13 12 38 38 H 0.96999 * 119.99631 * 179.97438 * 18 17 15 39 39 H 1.08998 * 110.14251 * 240.73074 * 24 7 6 40 40 H 1.09004 * 110.08793 * 119.19319 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6049 2.0000 0.8295 5 6 1.7136 2.1329 -1.3476 6 6 2.7669 3.2666 -1.4149 7 6 4.0425 2.6334 -0.8219 8 1 4.6781 2.2547 -1.6224 9 6 4.7938 3.6534 -0.0057 10 7 4.3367 4.3036 1.0224 11 8 5.1868 5.0508 1.4585 12 6 6.3007 4.9454 0.7276 13 6 7.5869 5.7021 0.9376 14 6 7.5485 7.0053 0.1369 15 6 8.8345 7.7623 0.3474 16 1 9.6022 7.3549 0.9885 17 6 9.0310 8.9750 -0.2785 18 7 8.0963 9.4709 -1.0596 19 14 10.6252 9.9130 -0.0181 20 1 11.7683 9.0833 -0.4766 21 1 10.5879 11.1779 -0.7952 22 1 10.7867 10.2238 1.4250 23 7 6.0620 4.0545 -0.2045 24 6 3.5804 1.4707 0.0797 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8401 1.4383 -2.1780 31 1 0.7028 2.5409 -1.3377 32 1 2.9360 3.5693 -2.4481 33 1 2.4481 4.1195 -0.8157 34 1 7.7057 5.9299 1.9969 35 1 8.4259 5.0932 0.6007 36 1 7.4298 6.7775 -0.9224 37 1 6.7096 7.6142 0.4739 38 1 8.2344 10.3242 -1.4996 39 1 3.8980 1.6438 1.1078 40 1 3.9903 0.5287 -0.2847 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233946961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:26 Heat of formation + Delta-G solvation = 6.914854 kcal Electronic energy + Delta-G solvation = -19460.786193 eV Core-core repulsion = 16469.412504 eV Total energy + Delta-G solvation = -2991.373688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.56020 -39.85423 -37.01273 -36.20982 -34.66067 -33.67780 -31.83487 -29.89361 -28.89079 -27.74572 -24.92841 -24.32310 -23.56299 -22.76879 -20.95148 -20.53234 -19.08134 -18.69310 -18.29064 -16.72529 -16.51412 -16.22585 -15.62645 -15.48747 -15.10538 -14.63113 -14.34928 -14.07406 -13.96317 -13.57456 -13.39769 -13.31132 -12.88055 -12.78529 -12.66552 -12.33156 -12.20989 -12.15760 -12.06483 -11.94538 -11.83606 -11.67671 -11.53437 -11.42819 -11.35913 -11.27866 -10.69640 -10.56562 -8.20921 -6.33302 0.13006 1.22064 1.45765 1.48746 1.56323 1.87266 2.43300 2.62652 3.04266 3.14305 3.53051 3.63510 3.73803 4.01538 4.25773 4.30511 4.36943 4.42184 4.42829 4.51610 4.56500 4.64091 4.67146 4.75218 4.80025 4.85564 4.93725 4.98433 5.00722 5.06389 5.17525 5.22917 5.23705 5.32726 5.41784 5.44245 5.51730 5.56854 5.76553 6.12184 6.82173 7.15775 7.36914 8.91469 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.055779 B = 0.003150 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.861381 B = 8885.354033 C = 9075.131480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.088 4.088 4 H 0.062 0.938 5 C -0.105 4.105 6 C -0.117 4.117 7 C -0.005 4.005 8 H 0.109 0.891 9 C 0.176 3.824 10 N -0.406 5.406 11 O 0.055 5.945 12 C 0.206 3.794 13 C -0.014 4.014 14 C 0.035 3.965 15 C -0.540 4.540 16 H 0.079 0.921 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.264 1.264 21 H -0.289 1.289 22 H -0.263 1.263 23 N -0.515 5.515 24 C -0.103 4.103 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.113 0.887 36 H -0.007 1.007 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.047 0.953 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 -18.237 1.427 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.107 4.107 4 H 0.080 0.920 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.025 4.025 8 H 0.127 0.873 9 C -0.097 4.097 10 N -0.119 5.119 11 O 0.003 5.997 12 C -0.014 4.014 13 C -0.053 4.053 14 C -0.003 4.003 15 C -0.577 4.577 16 H 0.097 0.903 17 C -0.199 4.199 18 N -0.576 5.576 19 Si 0.795 3.205 20 H -0.189 1.189 21 H -0.215 1.215 22 H -0.187 1.187 23 N -0.249 5.249 24 C -0.142 4.142 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.011 0.989 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.348 -18.445 1.313 22.236 hybrid contribution 0.838 1.248 0.045 1.504 sum -11.510 -17.198 1.357 20.738 Atomic orbital electron populations 1.21785 0.95307 1.01996 1.01895 1.21534 0.96338 0.94530 1.02515 1.21998 0.93494 0.97214 0.97958 0.91976 1.22533 0.98024 0.96163 0.97532 1.22453 0.93535 0.98724 1.00895 1.20533 0.95494 0.90677 0.95809 0.87252 1.26417 0.89163 0.99714 0.94437 1.74476 1.13746 1.08066 1.15564 1.85257 1.18795 1.47942 1.47720 1.29543 0.92661 0.92884 0.86271 1.20512 0.85435 0.95084 1.04232 1.18932 0.96952 0.90503 0.93960 1.21539 1.02374 1.04739 1.29086 0.90312 1.26028 1.00560 0.98745 0.94571 1.70116 1.35897 1.19973 1.31591 0.85404 0.78980 0.77369 0.78728 1.18884 1.21465 1.18719 1.71953 1.14921 1.14332 1.23667 1.22309 0.96795 0.96974 0.98121 0.93348 0.92187 0.92017 0.90708 0.92050 0.89212 0.90379 0.90343 0.93251 0.86689 0.86836 0.98897 0.98556 0.92736 0.93420 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.78 71.98 0.70 -1.11 16 2 C -0.11 -1.47 5.28 30.60 0.16 -1.31 16 3 C -0.09 -1.54 2.87 -9.72 -0.03 -1.57 16 4 H 0.06 1.27 8.14 -2.39 -0.02 1.26 16 5 C -0.11 -1.73 5.59 31.89 0.18 -1.55 16 6 C -0.12 -2.71 6.35 31.67 0.20 -2.51 16 7 C -0.01 -0.13 3.44 -10.70 -0.04 -0.17 16 8 H 0.11 2.61 8.14 -2.38 -0.02 2.59 16 9 C 0.18 6.14 6.45 138.46 0.89 7.03 16 10 N -0.41 -15.14 11.95 -60.34 -0.72 -15.86 16 11 O 0.06 2.17 11.31 74.85 0.85 3.01 16 12 C 0.21 8.09 7.77 88.38 0.69 8.78 16 13 C -0.01 -0.54 5.78 29.85 0.17 -0.36 16 14 C 0.03 1.78 4.95 29.85 0.15 1.93 16 15 C -0.54 -28.93 9.11 25.60 0.23 -28.70 16 16 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 17 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 18 N -0.94 -56.35 13.29 21.45 0.28 -56.07 16 19 Si 0.97 42.69 29.54 68.60 2.03 44.71 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.98 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 N -0.51 -20.22 11.55 -303.22 -3.50 -23.72 16 24 C -0.10 -2.17 6.04 31.44 0.19 -1.98 16 25 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.67 7.45 -2.39 -0.02 0.65 16 27 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.84 8.06 -2.39 -0.02 0.82 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.09 1.17 8.00 -2.39 -0.02 1.15 16 31 H 0.08 1.17 8.02 -2.39 -0.02 1.16 16 32 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.05 1.37 7.70 -2.39 -0.02 1.35 16 34 H 0.11 3.87 8.14 -2.38 -0.02 3.86 16 35 H 0.11 4.08 8.14 -2.38 -0.02 4.06 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 38 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 39 H 0.05 1.18 7.66 -2.39 -0.02 1.16 16 40 H 0.09 1.58 7.84 -2.38 -0.02 1.56 16 Total: -1.00 -64.82 330.02 3.90 -60.91 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: 1.00 Total: 8.13 kcal Atomic # 6 Polarization: -25.08 SS G_CDS: 3.97 Total: -21.12 kcal Atomic # 7 Polarization: -91.71 SS G_CDS: -3.94 Total: -95.65 kcal Atomic # 8 Polarization: 2.17 SS G_CDS: 0.85 Total: 3.01 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -64.82 3.90 -60.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233946961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.830 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds