Wall clock time and date at job start Mon Mar 30 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08997 * 109.47395 * 305.00572 * 3 2 1 5 5 C 1.52999 * 109.46811 * 65.00188 * 3 2 1 6 6 C 1.52996 * 109.47179 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47201 * 300.00021 * 6 5 3 8 8 C 1.53003 * 109.46897 * 59.99589 * 7 6 5 9 9 H 1.09001 * 109.47096 * 60.00495 * 8 7 6 10 10 C 1.50708 * 109.47079 * 179.97438 * 8 7 6 11 11 N 1.29949 * 126.28187 * 59.69233 * 10 8 7 12 12 O 1.21301 * 110.24662 * 179.84480 * 11 10 8 13 13 C 1.33644 * 109.80939 * 0.42107 * 12 11 10 14 14 C 1.50707 * 126.54913 * 179.75898 * 13 12 11 15 15 C 1.50693 * 109.47052 * 269.97878 * 14 13 12 16 16 H 1.08001 * 120.00380 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99773 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00051 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00085 * 359.97438 * 17 15 14 20 20 H 1.48500 * 109.47068 * 89.99986 * 19 17 15 21 21 H 1.48505 * 109.47311 * 209.99925 * 19 17 15 22 22 H 1.48499 * 109.47158 * 329.99855 * 19 17 15 23 23 N 1.31124 * 106.89913 * 359.74052 * 13 12 11 24 24 C 1.52996 * 109.47531 * 300.00209 * 8 7 6 25 25 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 28 28 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 29 29 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 30 30 H 1.09009 * 109.47170 * 300.00068 * 5 3 2 31 31 H 1.09001 * 109.47273 * 59.99848 * 5 3 2 32 32 H 1.08998 * 109.47611 * 180.02562 * 6 5 3 33 33 H 1.09001 * 109.47165 * 59.99753 * 6 5 3 34 34 H 1.08997 * 109.47219 * 300.00244 * 7 6 5 35 35 H 1.09002 * 109.47423 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46809 * 29.98145 * 14 13 12 37 37 H 1.09002 * 109.46689 * 149.97738 * 14 13 12 38 38 H 0.97001 * 120.00256 * 179.97438 * 18 17 15 39 39 H 1.09001 * 109.47165 * 300.00244 * 24 8 7 40 40 H 1.08995 * 109.47118 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 2.1446 3.5692 1.3072 7 6 3.6695 3.5717 1.1812 8 6 4.0742 2.8876 -0.1262 9 1 3.6392 3.4264 -0.9680 10 6 5.5761 2.8906 -0.2507 11 7 6.4174 2.3472 0.5773 12 8 7.5552 2.5212 0.1942 13 6 7.5477 3.2208 -0.9444 14 6 8.7523 3.6512 -1.7413 15 6 9.2127 5.0045 -1.2643 16 1 8.6855 5.5034 -0.4645 17 6 10.3063 5.6064 -1.8498 18 7 10.7079 6.7877 -1.4339 19 14 11.2177 4.7440 -3.2336 20 1 10.6195 5.1306 -4.5366 21 1 12.6481 5.1423 -3.2080 22 1 11.1101 3.2736 -3.0562 23 7 6.2920 3.4609 -1.2360 24 6 3.5648 1.4449 -0.1261 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.5488 2.1252 1.3970 31 1 2.0699 1.5874 2.1492 32 1 1.8567 4.0564 2.2388 33 1 1.7097 4.1080 0.4654 34 1 4.1045 3.0328 2.0228 35 1 4.0324 4.5995 1.1806 36 1 9.5549 2.9261 -1.6067 37 1 8.4878 3.7087 -2.7971 38 1 11.4775 7.2110 -1.8455 39 1 3.9998 0.9061 0.7157 40 1 3.8527 0.9578 -1.0576 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234065593.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:30 Heat of formation + Delta-G solvation = 5.059029 kcal Electronic energy + Delta-G solvation = -19838.140369 eV Core-core repulsion = 16846.686206 eV Total energy + Delta-G solvation = -2991.454163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.46684 -40.13926 -36.95455 -35.91776 -34.84462 -33.78990 -31.89091 -30.74735 -29.91806 -25.82142 -25.61662 -24.42639 -23.68490 -22.61554 -21.03782 -20.56621 -19.45760 -18.55217 -18.35545 -16.69926 -16.47811 -15.80470 -15.59938 -15.45426 -14.93706 -14.78291 -14.49200 -14.37291 -14.17377 -13.76309 -13.39879 -13.26262 -13.08429 -12.83066 -12.50804 -12.43500 -12.27901 -12.23834 -12.09605 -11.94179 -11.91452 -11.76013 -11.64698 -11.37836 -11.13238 -11.00761 -10.84545 -10.62381 -8.36246 -6.48456 0.22298 1.30674 1.43682 1.45243 1.56058 1.99139 2.34088 2.67247 2.97662 3.15883 3.64920 3.69885 3.80157 4.07152 4.12142 4.24064 4.30095 4.40135 4.44722 4.51630 4.55048 4.67846 4.72821 4.77366 4.78504 4.89262 4.94402 5.01424 5.08768 5.11494 5.14161 5.18219 5.22188 5.27686 5.30490 5.30809 5.37537 5.53013 5.59951 6.06617 6.53777 7.14731 7.22666 8.80133 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.040387 B = 0.003761 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.123194 B = 7443.860719 C = 7744.035774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.080 4.080 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.109 4.109 8 C 0.008 3.992 9 H 0.101 0.899 10 C 0.172 3.828 11 N -0.410 5.410 12 O 0.050 5.950 13 C 0.229 3.771 14 C 0.075 3.925 15 C -0.541 4.541 16 H 0.023 0.977 17 C 0.020 3.980 18 N -0.941 5.941 19 Si 0.955 3.045 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.230 1.230 23 N -0.520 5.520 24 C -0.097 4.097 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.274 0.726 39 H 0.059 0.941 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.645 -13.127 1.458 22.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.098 4.098 4 H 0.097 0.903 5 C -0.150 4.150 6 C -0.148 4.148 7 C -0.147 4.147 8 C -0.012 4.012 9 H 0.120 0.880 10 C -0.102 4.102 11 N -0.124 5.124 12 O -0.001 6.001 13 C 0.010 3.990 14 C 0.036 3.964 15 C -0.580 4.580 16 H 0.042 0.958 17 C -0.180 4.180 18 N -0.579 5.579 19 Si 0.776 3.224 20 H -0.186 1.186 21 H -0.206 1.206 22 H -0.152 1.152 23 N -0.255 5.255 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.063 -13.257 1.925 23.299 hybrid contribution 1.183 0.507 -0.322 1.327 sum -17.880 -12.749 1.603 22.019 Atomic orbital electron populations 1.21801 0.94678 1.01969 1.02338 1.21533 0.96809 0.95297 1.01916 1.21156 0.92488 0.97101 0.99057 0.90268 1.21658 1.01724 0.94654 0.96923 1.21506 0.92186 0.97956 1.03103 1.21565 0.98590 0.99376 0.95188 1.19765 0.80702 0.99773 1.00932 0.88041 1.26498 1.01172 0.94842 0.87651 1.74446 0.89933 1.24691 1.23331 1.85233 1.24577 1.55412 1.34876 1.29367 0.96421 0.87918 0.85325 1.18455 0.86755 0.96583 0.94583 1.20745 1.14579 1.01927 1.20702 0.95842 1.25933 0.97078 0.95233 0.99718 1.70026 1.26914 1.17058 1.43898 0.85596 0.77500 0.80945 0.78364 1.18595 1.20566 1.15242 1.71940 1.01786 1.24139 1.27585 1.21574 0.97207 0.92830 1.01893 0.92431 0.91848 0.92508 0.92269 0.92143 0.89574 0.92173 0.90382 0.90844 0.92287 0.93356 0.90152 0.90298 0.91703 0.92201 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.67 71.98 0.70 -1.05 16 2 C -0.12 -1.73 5.40 30.60 0.17 -1.56 16 3 C -0.08 -1.34 2.19 -10.79 -0.02 -1.36 16 4 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 5 C -0.11 -1.72 4.96 30.59 0.15 -1.57 16 6 C -0.11 -1.96 5.92 30.59 0.18 -1.78 16 7 C -0.11 -2.79 5.19 30.60 0.16 -2.63 16 8 C 0.01 0.24 2.66 -11.54 -0.03 0.21 16 9 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 10 C 0.17 6.60 6.73 138.47 0.93 7.53 16 11 N -0.41 -16.73 12.16 -60.33 -0.73 -17.46 16 12 O 0.05 2.19 11.31 74.82 0.85 3.04 16 13 C 0.23 10.29 7.70 88.38 0.68 10.97 16 14 C 0.08 3.40 4.67 29.10 0.14 3.54 16 15 C -0.54 -30.53 9.65 25.60 0.25 -30.28 16 16 H 0.02 1.52 7.98 -2.91 -0.02 1.49 16 17 C 0.02 1.09 5.47 84.65 0.46 1.55 16 18 N -0.94 -57.04 13.96 21.45 0.30 -56.74 16 19 Si 0.96 40.15 27.47 68.60 1.88 42.03 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.23 -8.44 6.54 99.48 0.65 -7.79 16 23 N -0.52 -22.84 11.55 -303.20 -3.50 -26.34 16 24 C -0.10 -2.25 4.47 30.59 0.14 -2.12 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.66 6.56 -2.39 -0.02 0.64 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.01 6.57 -2.38 -0.02 1.00 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 3.26 7.20 -2.39 -0.02 3.24 16 37 H 0.08 3.32 7.57 -2.39 -0.02 3.30 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -65.86 321.90 3.64 -62.22 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.95 Total: 11.82 kcal Atomic # 6 Polarization: -22.45 SS G_CDS: 3.89 Total: -18.55 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -3.94 Total: -100.55 kcal Atomic # 8 Polarization: 2.19 SS G_CDS: 0.85 Total: 3.04 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.88 Total: 42.03 kcal Total: -65.86 3.64 -62.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234065593.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.277 kcal (2) G-P(sol) polarization free energy of solvation -65.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds