Wall clock time and date at job start Mon Mar 30 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.08999 * 109.47161 * 305.00344 * 3 2 1 5 5 C 1.52999 * 109.46853 * 65.00151 * 3 2 1 6 6 C 1.52998 * 109.47093 * 60.00276 * 5 3 2 7 7 C 1.53000 * 109.47393 * 59.99994 * 6 5 3 8 8 C 1.53003 * 109.46713 * 299.99622 * 7 6 5 9 9 H 1.08996 * 109.47585 * 300.00347 * 8 7 6 10 10 C 1.50703 * 109.47202 * 179.97438 * 8 7 6 11 11 N 1.29951 * 126.28850 * 300.00560 * 10 8 7 12 12 O 1.21300 * 110.25010 * 179.97438 * 11 10 8 13 13 C 1.33641 * 109.81196 * 0.02562 * 12 11 10 14 14 C 1.50698 * 126.55323 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47085 * 270.04094 * 14 13 12 16 16 H 1.07996 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99909 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99856 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00194 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47390 * 89.99717 * 19 17 15 21 21 H 1.48504 * 109.46872 * 210.00133 * 19 17 15 22 22 H 1.48500 * 109.46930 * 329.99565 * 19 17 15 23 23 N 1.31134 * 106.89855 * 359.97438 * 13 12 11 24 24 C 1.53003 * 109.46993 * 185.00379 * 3 2 1 25 25 H 1.08991 * 109.47206 * 59.99970 * 1 2 3 26 26 H 1.09004 * 109.46692 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47062 * 299.99220 * 1 2 3 28 28 H 1.09001 * 109.47325 * 240.00048 * 2 1 3 29 29 H 1.09005 * 109.47186 * 120.00243 * 2 1 3 30 30 H 1.08995 * 109.46989 * 299.99806 * 5 3 2 31 31 H 1.09010 * 109.46597 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47236 * 299.99445 * 6 5 3 33 33 H 1.08998 * 109.46837 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.47292 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47377 * 59.99538 * 7 6 5 36 36 H 1.09005 * 109.47181 * 30.03923 * 14 13 12 37 37 H 1.08999 * 109.47748 * 150.03929 * 14 13 12 38 38 H 0.97004 * 120.00061 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46697 * 180.02562 * 24 3 2 40 40 H 1.08998 * 109.47237 * 59.99694 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.2454 1.3699 2.4889 7 6 3.7702 1.3718 2.3632 8 6 4.1749 0.6877 1.0558 9 1 3.8116 -0.3399 1.0558 10 6 5.6768 0.6901 0.9316 11 7 6.4441 1.7383 0.8986 12 8 7.6057 1.4052 0.7932 13 6 7.6923 0.0724 0.7472 14 6 8.9543 -0.7412 0.6190 15 6 9.2584 -0.9701 -0.8391 16 1 8.6031 -0.5672 -1.5972 17 6 10.3733 -1.6940 -1.2054 18 7 10.6384 -1.8943 -2.4779 19 14 11.5064 -2.3915 0.1057 20 1 11.0505 -3.7543 0.4800 21 1 12.8921 -2.4609 -0.4236 22 1 11.4773 -1.5136 1.3031 23 7 6.4692 -0.3923 0.8348 24 6 3.5648 1.4444 -0.1258 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.5489 2.1252 1.3969 31 1 1.9982 3.1544 1.3071 32 1 1.8821 0.3422 2.4890 33 1 1.9573 1.8574 3.4203 34 1 4.2048 0.8324 3.2048 35 1 4.1335 2.3994 2.3632 36 1 9.7817 -0.2039 1.0827 37 1 8.8200 -1.7013 1.1172 38 1 11.4230 -2.4032 -2.7357 39 1 3.9281 2.4721 -0.1254 40 1 3.8531 0.9570 -1.0572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234101079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:33 Heat of formation + Delta-G solvation = 27.454946 kcal Electronic energy + Delta-G solvation = -20069.646933 eV Core-core repulsion = 17079.163930 eV Total energy + Delta-G solvation = -2990.483003 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.80846 -39.53111 -35.38057 -34.15488 -33.13067 -32.05878 -30.71260 -29.44473 -28.82671 -24.43287 -23.88218 -23.35946 -22.35907 -22.08059 -20.13108 -18.33206 -17.58003 -16.86885 -16.64226 -15.87207 -15.09743 -14.72540 -14.44901 -14.20681 -13.77063 -13.49054 -13.16164 -12.80051 -12.58356 -12.47255 -12.26969 -12.22114 -11.79858 -11.66014 -11.33800 -11.21358 -11.10319 -10.90451 -10.76534 -10.65974 -10.38897 -10.32575 -10.23081 -10.09235 -9.97911 -9.67034 -8.96594 -8.75481 -6.24016 -4.28185 1.92580 2.94679 3.20464 3.27585 3.28459 3.71397 4.09367 4.26080 4.47179 4.60904 4.73012 4.79337 5.00864 5.06715 5.09324 5.13425 5.27458 5.32207 5.40119 5.45848 5.50455 5.57848 5.64230 5.75233 5.85121 5.92690 5.96194 6.04158 6.06470 6.07830 6.18188 6.24452 6.31970 6.41612 6.46346 6.61140 6.64724 6.86614 7.32814 8.23669 8.75451 8.91351 9.30180 10.88196 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.004084 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.803168 B = 6854.516989 C = 7195.454648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.084 4.084 4 H 0.072 0.928 5 C -0.116 4.116 6 C -0.118 4.118 7 C -0.110 4.110 8 C 0.010 3.990 9 H 0.098 0.902 10 C 0.166 3.834 11 N -0.404 5.404 12 O 0.061 5.939 13 C 0.240 3.760 14 C 0.070 3.930 15 C -0.528 4.528 16 H 0.077 0.923 17 C 0.079 3.921 18 N -0.888 5.888 19 Si 0.878 3.122 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.262 1.262 23 N -0.503 5.503 24 C -0.107 4.107 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.269 0.731 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.795 5.438 8.699 19.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.102 4.102 4 H 0.090 0.910 5 C -0.154 4.154 6 C -0.155 4.155 7 C -0.148 4.148 8 C -0.010 4.010 9 H 0.117 0.883 10 C -0.108 4.108 11 N -0.116 5.116 12 O 0.007 5.993 13 C 0.021 3.979 14 C 0.031 3.969 15 C -0.566 4.566 16 H 0.095 0.905 17 C -0.125 4.125 18 N -0.525 5.525 19 Si 0.704 3.296 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.186 1.186 23 N -0.237 5.237 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -17.252 5.848 8.629 20.157 hybrid contribution 0.918 -0.509 0.354 1.108 sum -16.334 5.340 8.983 19.391 Atomic orbital electron populations 1.21812 0.96078 1.01403 1.01634 1.21717 0.95648 0.96486 1.02642 1.21134 0.94769 0.96410 0.97922 0.90961 1.21612 1.00189 0.99230 0.94338 1.21557 0.94769 1.01104 0.98117 1.21562 0.95988 1.01223 0.96032 1.19489 0.83271 1.01919 0.96321 0.88346 1.25692 0.99562 0.84443 1.01075 1.74459 0.89966 1.24304 1.22884 1.85249 1.22183 1.25895 1.65956 1.29436 0.97458 0.81056 0.89907 1.18548 0.84393 0.93231 1.00777 1.20624 1.11240 1.36354 0.88401 0.90503 1.24863 0.96982 0.95049 0.95568 1.69868 1.27540 1.39549 1.15514 0.86804 0.80433 0.80245 0.82136 1.19660 1.20726 1.18603 1.71941 1.00103 1.28892 1.22758 1.21615 0.94661 1.00853 0.97368 0.92970 0.92966 0.92609 0.91805 0.91205 0.91723 0.91963 0.91377 0.91864 0.91839 0.91294 0.92571 0.91999 0.92076 0.91230 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.16 0.36 -0.86 16 2 C -0.13 -1.23 4.69 -26.73 -0.13 -1.36 16 3 C -0.08 -0.84 2.66 -90.62 -0.24 -1.08 16 4 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 5 C -0.12 -1.04 5.21 -26.73 -0.14 -1.18 16 6 C -0.12 -1.11 5.65 -26.73 -0.15 -1.26 16 7 C -0.11 -1.34 5.19 -26.73 -0.14 -1.47 16 8 C 0.01 0.14 2.39 -91.77 -0.22 -0.07 16 9 H 0.10 1.39 6.54 -51.93 -0.34 1.06 16 10 C 0.17 3.16 6.72 -156.37 -1.05 2.11 16 11 N -0.40 -8.15 12.16 30.90 0.38 -7.77 16 12 O 0.06 1.33 11.31 18.11 0.20 1.53 16 13 C 0.24 5.36 7.70 -13.06 -0.10 5.26 16 14 C 0.07 1.60 4.67 -29.04 -0.14 1.46 16 15 C -0.53 -14.51 9.65 -34.44 -0.33 -14.85 16 16 H 0.08 2.36 7.98 -52.49 -0.42 1.94 16 17 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 18 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 19 Si 0.88 19.92 27.47 -169.99 -4.67 15.25 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.26 -5.53 6.54 56.52 0.37 -5.16 16 23 N -0.50 -10.96 11.55 -9.87 -0.11 -11.08 16 24 C -0.11 -1.39 4.71 -26.73 -0.13 -1.52 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.41 6.57 -51.93 -0.34 0.07 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.69 4.83 -51.93 -0.25 0.44 16 30 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 31 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.07 0.61 6.32 -51.93 -0.33 0.29 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.20 7.20 -51.93 -0.37 0.83 16 37 H 0.06 1.36 7.57 -51.93 -0.39 0.97 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -29.51 314.88 -7.36 -36.87 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.18 Total: -1.40 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.50 Total: -12.74 kcal Atomic # 7 Polarization: -45.29 SS G_CDS: 1.04 Total: -44.26 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.53 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.51 -7.36 -36.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234101079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.325 kcal (2) G-P(sol) polarization free energy of solvation -29.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds