Wall clock time and date at job start Mon Mar 30 2020 06:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47009 * 2 1 4 4 H 1.08999 * 109.47161 * 305.00344 * 3 2 1 5 5 C 1.52999 * 109.46853 * 65.00151 * 3 2 1 6 6 C 1.52998 * 109.47093 * 60.00276 * 5 3 2 7 7 C 1.53000 * 109.47393 * 59.99994 * 6 5 3 8 8 C 1.53003 * 109.46713 * 299.99622 * 7 6 5 9 9 H 1.08996 * 109.47585 * 300.00347 * 8 7 6 10 10 C 1.50703 * 109.47202 * 179.97438 * 8 7 6 11 11 N 1.29951 * 126.28850 * 300.00560 * 10 8 7 12 12 O 1.21300 * 110.25010 * 179.97438 * 11 10 8 13 13 C 1.33641 * 109.81196 * 0.02562 * 12 11 10 14 14 C 1.50698 * 126.55323 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47085 * 270.04094 * 14 13 12 16 16 H 1.07996 * 119.99914 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99909 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99856 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00194 * 0.02562 * 17 15 14 20 20 H 1.48492 * 109.47390 * 89.99717 * 19 17 15 21 21 H 1.48504 * 109.46872 * 210.00133 * 19 17 15 22 22 H 1.48500 * 109.46930 * 329.99565 * 19 17 15 23 23 N 1.31134 * 106.89855 * 359.97438 * 13 12 11 24 24 C 1.53003 * 109.46993 * 185.00379 * 3 2 1 25 25 H 1.08991 * 109.47206 * 59.99970 * 1 2 3 26 26 H 1.09004 * 109.46692 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47062 * 299.99220 * 1 2 3 28 28 H 1.09001 * 109.47325 * 240.00048 * 2 1 3 29 29 H 1.09005 * 109.47186 * 120.00243 * 2 1 3 30 30 H 1.08995 * 109.46989 * 299.99806 * 5 3 2 31 31 H 1.09010 * 109.46597 * 180.02562 * 5 3 2 32 32 H 1.08996 * 109.47236 * 299.99445 * 6 5 3 33 33 H 1.08998 * 109.46837 * 179.97438 * 6 5 3 34 34 H 1.08999 * 109.47292 * 180.02562 * 7 6 5 35 35 H 1.08996 * 109.47377 * 59.99538 * 7 6 5 36 36 H 1.09005 * 109.47181 * 30.03923 * 14 13 12 37 37 H 1.08999 * 109.47748 * 150.03929 * 14 13 12 38 38 H 0.97004 * 120.00061 * 179.97438 * 18 17 15 39 39 H 1.09004 * 109.46697 * 180.02562 * 24 3 2 40 40 H 1.08998 * 109.47237 * 59.99694 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.2454 1.3699 2.4889 7 6 3.7702 1.3718 2.3632 8 6 4.1749 0.6877 1.0558 9 1 3.8116 -0.3399 1.0558 10 6 5.6768 0.6901 0.9316 11 7 6.4441 1.7383 0.8986 12 8 7.6057 1.4052 0.7932 13 6 7.6923 0.0724 0.7472 14 6 8.9543 -0.7412 0.6190 15 6 9.2584 -0.9701 -0.8391 16 1 8.6031 -0.5672 -1.5972 17 6 10.3733 -1.6940 -1.2054 18 7 10.6384 -1.8943 -2.4779 19 14 11.5064 -2.3915 0.1057 20 1 11.0505 -3.7543 0.4800 21 1 12.8921 -2.4609 -0.4236 22 1 11.4773 -1.5136 1.3031 23 7 6.4692 -0.3923 0.8348 24 6 3.5648 1.4444 -0.1258 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.5489 2.1252 1.3969 31 1 1.9982 3.1544 1.3071 32 1 1.8821 0.3422 2.4890 33 1 1.9573 1.8574 3.4203 34 1 4.2048 0.8324 3.2048 35 1 4.1335 2.3994 2.3632 36 1 9.7817 -0.2039 1.0827 37 1 8.8200 -1.7013 1.1172 38 1 11.4230 -2.4032 -2.7357 39 1 3.9281 2.4721 -0.1254 40 1 3.8531 0.9570 -1.0572 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234101079.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:33 Heat of formation + Delta-G solvation = 9.420212 kcal Electronic energy + Delta-G solvation = -20070.428978 eV Core-core repulsion = 17079.163930 eV Total energy + Delta-G solvation = -2991.265048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.46463 -40.47561 -36.94087 -35.87151 -34.53039 -33.54951 -31.90712 -30.77144 -30.16411 -25.81898 -25.58660 -24.31868 -23.73197 -23.18664 -21.55429 -19.45822 -19.23242 -18.54917 -18.44229 -16.96482 -16.53387 -15.87781 -15.71721 -15.41549 -15.16571 -14.55392 -14.48763 -14.20901 -14.05355 -13.57382 -13.45843 -13.24941 -13.10248 -13.00831 -12.62333 -12.49853 -12.40353 -12.29981 -12.01676 -11.97443 -11.89238 -11.76115 -11.58158 -11.18565 -11.06018 -10.94284 -10.84540 -10.62348 -8.36234 -6.48499 0.22428 1.30915 1.43646 1.45234 1.56027 1.99220 2.34084 2.68749 2.97767 3.15741 3.65949 3.70295 3.79543 4.09378 4.17758 4.21402 4.28493 4.39030 4.39816 4.52237 4.57533 4.67046 4.75954 4.77699 4.83608 4.88749 4.92327 4.99219 5.09173 5.09656 5.13861 5.17582 5.23488 5.24993 5.30739 5.36251 5.44949 5.49055 5.64074 6.06583 6.53699 7.14745 7.22811 8.80154 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.033373 B = 0.004084 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.803168 B = 6854.516989 C = 7195.454648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.077 4.077 4 H 0.081 0.919 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.104 4.104 8 C 0.009 3.991 9 H 0.102 0.898 10 C 0.171 3.829 11 N -0.410 5.410 12 O 0.050 5.950 13 C 0.229 3.771 14 C 0.075 3.925 15 C -0.542 4.542 16 H 0.023 0.977 17 C 0.020 3.980 18 N -0.940 5.940 19 Si 0.955 3.045 20 H -0.261 1.261 21 H -0.280 1.280 22 H -0.230 1.230 23 N -0.520 5.520 24 C -0.103 4.103 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.274 0.726 39 H 0.059 0.941 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.956 5.365 11.162 21.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C -0.096 4.096 4 H 0.099 0.901 5 C -0.150 4.150 6 C -0.149 4.149 7 C -0.142 4.142 8 C -0.011 4.011 9 H 0.120 0.880 10 C -0.102 4.102 11 N -0.124 5.124 12 O -0.001 6.001 13 C 0.009 3.991 14 C 0.036 3.964 15 C -0.580 4.580 16 H 0.041 0.959 17 C -0.179 4.179 18 N -0.579 5.579 19 Si 0.776 3.224 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.152 1.152 23 N -0.255 5.255 24 C -0.142 4.142 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.419 5.799 11.100 22.273 hybrid contribution 1.198 -0.448 -0.528 1.383 sum -17.221 5.352 10.572 20.904 Atomic orbital electron populations 1.21783 0.94399 1.01921 1.02419 1.21708 0.97086 0.95863 1.01885 1.21112 0.92046 0.97143 0.99283 0.90116 1.21616 1.01511 0.98831 0.93082 1.21554 0.92178 1.01988 0.99214 1.21544 0.98348 1.00146 0.94209 1.19792 0.80249 1.02795 0.98310 0.87989 1.26536 1.01324 0.83333 0.99020 1.74445 0.89666 1.24608 1.23712 1.85231 1.22950 1.25582 1.66346 1.29368 0.97648 0.81461 0.90573 1.18454 0.85520 0.94503 0.97897 1.20746 1.10817 1.36526 0.89916 0.95875 1.25927 0.98710 0.95034 0.98228 1.70028 1.28644 1.40799 1.18407 0.85600 0.77294 0.80050 0.79487 1.18591 1.20542 1.15247 1.71946 1.00364 1.30076 1.23081 1.21594 0.97184 0.99620 0.95767 0.92633 0.92659 0.91342 0.93253 0.91387 0.89476 0.92031 0.90586 0.89957 0.92152 0.92155 0.90154 0.90298 0.91705 0.92191 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 71.98 0.70 -1.31 16 2 C -0.13 -2.28 4.69 30.59 0.14 -2.13 16 3 C -0.08 -1.43 2.66 -10.79 -0.03 -1.46 16 4 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 5 C -0.11 -1.70 5.21 30.59 0.16 -1.55 16 6 C -0.11 -1.78 5.65 30.59 0.17 -1.61 16 7 C -0.10 -2.39 5.19 30.60 0.16 -2.23 16 8 C 0.01 0.24 2.39 -11.54 -0.03 0.22 16 9 H 0.10 2.84 6.54 -2.39 -0.02 2.82 16 10 C 0.17 6.60 6.72 138.46 0.93 7.53 16 11 N -0.41 -16.76 12.16 -60.31 -0.73 -17.49 16 12 O 0.05 2.19 11.31 74.85 0.85 3.03 16 13 C 0.23 10.30 7.70 88.38 0.68 10.98 16 14 C 0.08 3.41 4.67 29.10 0.14 3.55 16 15 C -0.54 -30.61 9.65 25.60 0.25 -30.36 16 16 H 0.02 1.50 7.98 -2.91 -0.02 1.48 16 17 C 0.02 1.12 5.47 84.65 0.46 1.59 16 18 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 19 Si 0.96 40.15 27.47 68.60 1.88 42.04 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.23 -8.45 6.54 99.48 0.65 -7.80 16 23 N -0.52 -22.90 11.55 -303.18 -3.50 -26.40 16 24 C -0.10 -2.69 4.71 30.60 0.14 -2.55 16 25 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.76 6.57 -2.39 -0.02 0.75 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.23 4.83 -2.38 -0.01 1.22 16 30 H 0.09 0.99 6.56 -2.39 -0.02 0.97 16 31 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.08 1.13 6.32 -2.39 -0.02 1.11 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.08 3.26 7.20 -2.38 -0.02 3.24 16 37 H 0.08 3.33 7.57 -2.39 -0.02 3.31 16 38 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -66.11 314.88 3.64 -62.48 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.97 Total: 12.44 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 3.88 Total: -19.34 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -3.94 Total: -100.65 kcal Atomic # 8 Polarization: 2.19 SS G_CDS: 0.85 Total: 3.03 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 1.88 Total: 42.04 kcal Total: -66.11 3.64 -62.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234101079.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.896 kcal (2) G-P(sol) polarization free energy of solvation -66.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds