Wall clock time and date at job start Mon Mar 30 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46541 * 2 1 4 4 C 1.52997 * 109.47019 * 184.60558 * 3 2 1 5 5 C 1.50705 * 109.47193 * 64.60569 * 3 2 1 6 6 H 1.07999 * 119.99512 * 234.28441 * 5 3 2 7 7 C 1.37872 * 119.99754 * 54.28739 * 5 3 2 8 8 N 1.31517 * 119.99419 * 209.32735 * 7 5 3 9 9 Si 1.86799 * 120.00360 * 29.33132 * 7 5 3 10 10 H 1.48501 * 109.47130 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46835 * 299.99659 * 9 7 5 12 12 H 1.48498 * 109.47132 * 59.99931 * 9 7 5 13 13 C 1.53004 * 109.47373 * 304.60510 * 3 2 1 14 14 C 1.50706 * 109.46622 * 300.00566 * 13 3 2 15 15 N 1.31125 * 126.55647 * 90.00507 * 14 13 3 16 16 C 1.34491 * 105.62017 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.29092 * 180.02562 * 16 15 14 18 18 C 1.52998 * 109.46816 * 89.99917 * 17 16 15 19 19 C 1.52997 * 117.49795 * 243.62164 * 18 17 16 20 20 C 1.53004 * 60.00208 * 252.51130 * 19 18 17 21 21 N 1.29947 * 107.41961 * 359.97438 * 16 15 14 22 22 O 1.21303 * 110.25466 * 359.70455 * 21 16 15 23 23 H 1.09004 * 109.46612 * 180.02562 * 1 2 3 24 24 H 1.08991 * 109.47364 * 299.99619 * 1 2 3 25 25 H 1.09001 * 109.47050 * 60.00631 * 1 2 3 26 26 H 1.08991 * 109.47364 * 240.00381 * 2 1 3 27 27 H 1.09001 * 109.47050 * 119.99369 * 2 1 3 28 28 H 1.09004 * 109.47228 * 295.29850 * 4 3 2 29 29 H 1.09002 * 109.47420 * 55.29686 * 4 3 2 30 30 H 1.09003 * 109.47274 * 175.29874 * 4 3 2 31 31 H 0.96998 * 120.00259 * 354.99489 * 8 7 5 32 32 H 1.09000 * 109.47028 * 60.00119 * 13 3 2 33 33 H 1.08991 * 109.47080 * 180.02562 * 13 3 2 34 34 H 1.08999 * 109.47119 * 209.99934 * 17 16 15 35 35 H 1.08996 * 109.46967 * 329.99867 * 17 16 15 36 36 H 1.09004 * 115.55230 * 29.33374 * 18 17 16 37 37 H 1.08997 * 117.50079 * 359.97438 * 19 18 17 38 38 H 1.09005 * 117.49742 * 145.02810 * 19 18 17 39 39 H 1.08996 * 117.49850 * 252.51390 * 20 19 18 40 40 H 1.09003 * 117.51925 * 107.47593 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5655 1.4442 -0.1158 5 6 1.6328 2.1193 1.2836 6 1 1.0853 3.0497 1.2533 7 6 1.9595 1.5506 2.4963 8 7 1.1889 1.7477 3.5437 9 14 3.4964 0.5003 2.6518 10 1 3.6212 0.0091 4.0476 11 1 3.4002 -0.6576 1.7269 12 1 4.6891 1.3138 2.3042 13 6 1.4375 2.1965 -1.1873 14 6 1.8445 1.5196 -2.4708 15 7 1.1973 0.5602 -3.0872 16 6 1.9278 0.2742 -4.1795 17 6 1.6050 -0.7658 -5.2213 18 6 0.7558 -0.1343 -6.3262 19 6 -0.6656 -0.6674 -6.5165 20 6 0.4201 -1.0009 -7.5417 21 7 2.9627 1.0601 -4.1722 22 8 2.9305 1.7877 -3.2021 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5137 0.8899 25 1 -0.3633 0.5137 -0.8901 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5137 0.8901 28 1 3.9977 0.9808 0.7710 29 1 3.8633 0.8824 -1.0011 30 1 3.9224 2.4707 -0.1999 31 1 0.4318 2.3508 3.4823 32 1 0.3506 2.1953 -1.1048 33 1 1.8011 3.2240 -1.1875 34 1 2.5306 -1.1506 -5.6495 35 1 1.0511 -1.5830 -4.7594 36 1 0.9218 0.9294 -6.4969 37 1 -0.9956 -1.4683 -5.8549 38 1 -1.4352 0.0457 -6.8124 39 1 0.3649 -0.5072 -8.5119 40 1 0.8047 -2.0207 -7.5543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234118820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:19 Heat of formation + Delta-G solvation = 85.648062 kcal Electronic energy + Delta-G solvation = -20636.535117 eV Core-core repulsion = 17648.575557 eV Total energy + Delta-G solvation = -2987.959560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -45.16673 -37.89880 -37.42117 -35.30113 -32.83187 -31.67482 -29.75456 -28.93729 -27.40519 -24.70414 -23.29568 -22.60147 -22.35534 -21.88004 -20.56368 -19.00819 -17.69945 -17.04877 -16.61298 -15.79826 -14.94942 -14.57182 -14.50656 -14.14367 -13.46617 -13.32881 -13.11550 -12.61360 -12.24410 -12.10889 -12.07924 -11.78977 -11.71836 -11.39798 -11.20546 -11.07362 -10.77801 -10.65129 -10.60089 -10.46878 -10.16859 -10.08538 -9.82453 -9.60063 -9.43183 -9.01974 -8.77475 -8.04110 -6.57232 -4.09894 1.56830 2.60198 3.32073 3.34971 3.39676 3.54297 3.61166 3.90798 4.38870 4.42892 4.56412 4.72722 4.80835 5.05115 5.13799 5.40531 5.46556 5.50744 5.62203 5.70402 5.74576 5.84216 5.91298 5.99617 6.03802 6.14384 6.30362 6.32646 6.39264 6.43942 6.52132 6.62158 6.73706 6.86576 7.03420 7.26234 7.35966 7.41445 8.08687 8.31260 8.57510 8.84449 9.52934 10.83022 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.034048 B = 0.005062 C = 0.004842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.178662 B = 5529.990105 C = 5781.508684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.115 4.115 3 C 0.057 3.943 4 C -0.154 4.154 5 C -0.605 4.605 6 H 0.061 0.939 7 C 0.046 3.954 8 N -0.886 5.886 9 Si 1.049 2.951 10 H -0.299 1.299 11 H -0.277 1.277 12 H -0.286 1.286 13 C -0.016 4.016 14 C 0.213 3.787 15 N -0.485 5.485 16 C 0.167 3.833 17 C 0.006 3.994 18 C -0.148 4.148 19 C -0.173 4.173 20 C -0.177 4.177 21 N -0.400 5.400 22 O 0.066 5.934 23 H 0.027 0.973 24 H 0.065 0.935 25 H 0.047 0.953 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.045 0.955 29 H 0.023 0.977 30 H 0.054 0.946 31 H 0.271 0.729 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -3.737 -16.174 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.153 4.153 3 C 0.055 3.945 4 C -0.210 4.210 5 C -0.642 4.642 6 H 0.079 0.921 7 C -0.162 4.162 8 N -0.518 5.518 9 Si 0.883 3.117 10 H -0.227 1.227 11 H -0.205 1.205 12 H -0.214 1.214 13 C -0.055 4.055 14 C -0.006 4.006 15 N -0.218 5.218 16 C -0.106 4.106 17 C -0.033 4.033 18 C -0.167 4.167 19 C -0.210 4.210 20 C -0.214 4.214 21 N -0.111 5.111 22 O 0.010 5.990 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.457 -4.973 -15.780 16.551 hybrid contribution -0.711 1.084 -0.980 1.625 sum -0.254 -3.890 -16.759 17.207 Atomic orbital electron populations 1.21608 0.96264 0.99115 1.01915 1.21886 0.96410 0.97618 0.99373 1.18475 0.90700 0.92638 0.92709 1.22430 0.99231 1.00701 0.98680 1.21519 1.41728 1.11379 0.89582 0.92054 1.25573 1.00017 0.97983 0.92610 1.70884 1.14781 1.31446 1.34717 0.84165 0.76487 0.76618 0.74435 1.22672 1.20487 1.21374 1.20732 1.02865 0.98499 0.83376 1.29492 0.82584 0.92213 0.96291 1.71961 1.29206 1.14536 1.06117 1.25618 0.89128 0.99681 0.96205 1.19428 1.00610 0.93150 0.90111 1.22108 0.97975 0.99292 0.97310 1.23060 0.91795 1.03553 1.02560 1.22993 1.03698 1.00736 0.93946 1.74549 1.22630 1.07626 1.06302 1.85283 1.40997 1.46666 1.26035 0.95398 0.91615 0.93370 0.95440 0.92164 0.93688 0.95812 0.92649 0.91842 0.87571 0.89187 0.89083 0.88713 0.87919 0.88320 0.88797 0.88707 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.25 37.16 0.34 -2.37 16 2 C -0.12 -2.51 4.29 -26.73 -0.11 -2.63 16 3 C 0.06 1.24 0.30 -155.66 -0.05 1.19 16 4 C -0.15 -3.25 7.63 37.16 0.28 -2.97 16 5 C -0.61 -15.30 7.38 -34.44 -0.25 -15.55 16 6 H 0.06 1.64 7.99 -52.49 -0.42 1.22 16 7 C 0.05 1.24 5.07 -17.82 -0.09 1.15 16 8 N -0.89 -25.50 13.70 55.43 0.76 -24.74 16 9 Si 1.05 24.93 23.54 -169.99 -4.00 20.93 16 10 H -0.30 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.28 -6.24 5.71 56.52 0.32 -5.92 16 12 H -0.29 -6.45 6.69 56.52 0.38 -6.07 16 13 C -0.02 -0.29 4.38 -27.88 -0.12 -0.42 16 14 C 0.21 3.90 5.76 -13.06 -0.08 3.83 16 15 N -0.48 -8.76 10.71 -9.87 -0.11 -8.86 16 16 C 0.17 2.74 7.43 -156.38 -1.16 1.58 16 17 C 0.01 0.07 6.12 -27.88 -0.17 -0.10 16 18 C -0.15 -1.62 5.72 -90.62 -0.52 -2.13 16 19 C -0.17 -1.65 10.18 -26.73 -0.27 -1.92 16 20 C -0.18 -1.50 10.25 -26.73 -0.27 -1.78 16 21 N -0.40 -7.07 12.16 30.90 0.38 -6.69 16 22 O 0.07 1.21 10.87 18.10 0.20 1.40 16 23 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 1.48 7.37 -51.93 -0.38 1.10 16 25 H 0.05 0.93 6.12 -51.93 -0.32 0.61 16 26 H 0.03 0.58 6.96 -51.93 -0.36 0.22 16 27 H 0.06 1.41 4.40 -51.93 -0.23 1.18 16 28 H 0.04 0.99 2.26 -51.93 -0.12 0.88 16 29 H 0.02 0.47 7.05 -51.93 -0.37 0.10 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 32 H 0.11 1.97 6.35 -51.93 -0.33 1.64 16 33 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 36 H 0.10 1.24 8.07 -51.93 -0.42 0.82 16 37 H 0.10 0.92 8.03 -51.93 -0.42 0.51 16 38 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 312.41 15.07 4.71 4.71 Total: -1.00 -27.89 312.41 -6.52 -34.41 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.98 Total: 0.96 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -2.47 Total: -22.11 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 1.03 Total: -40.29 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.20 Total: 1.40 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -4.00 Total: 20.93 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.89 -6.52 -34.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234118820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.059 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds