Wall clock time and date at job start Mon Mar 30 2020 06:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47280 * 2 1 4 4 C 1.53005 * 109.46851 * 180.02562 * 3 2 1 5 5 C 1.50696 * 109.47154 * 59.99966 * 3 2 1 6 6 H 1.07999 * 119.99822 * 240.00491 * 5 3 2 7 7 C 1.37876 * 120.00339 * 60.00025 * 5 3 2 8 8 N 1.31514 * 119.99769 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00300 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47118 * 89.99790 * 9 7 5 11 11 H 1.48499 * 109.47134 * 210.00310 * 9 7 5 12 12 H 1.48498 * 109.47011 * 329.99931 * 9 7 5 13 13 C 1.53002 * 109.46800 * 299.99925 * 3 2 1 14 14 C 1.50706 * 109.46925 * 299.99957 * 13 3 2 15 15 N 1.31134 * 126.54903 * 90.00608 * 14 13 3 16 16 C 1.34492 * 105.61140 * 179.97438 * 15 14 13 17 17 C 1.50699 * 126.28571 * 179.97438 * 16 15 14 18 18 H 1.08999 * 115.55186 * 334.27177 * 17 16 15 19 19 C 1.53004 * 117.49899 * 188.60467 * 17 16 15 20 20 C 1.52998 * 60.00163 * 252.50838 * 19 17 16 21 21 H 1.08999 * 117.50324 * 252.50967 * 20 19 17 22 22 C 1.53004 * 117.49625 * 107.48468 * 20 19 17 23 23 N 1.29945 * 107.42860 * 359.97438 * 16 15 14 24 24 O 1.21304 * 110.24811 * 359.71096 * 23 16 15 25 25 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.47076 * 59.99674 * 1 2 3 27 27 H 1.08993 * 109.47194 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 29 29 H 1.09001 * 109.47289 * 119.99597 * 2 1 3 30 30 H 1.08996 * 109.46524 * 179.97438 * 4 3 2 31 31 H 1.09001 * 109.46962 * 299.99689 * 4 3 2 32 32 H 1.08992 * 109.47199 * 60.00241 * 4 3 2 33 33 H 0.97000 * 120.00540 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46497 * 180.02562 * 13 3 2 35 35 H 1.09000 * 109.47312 * 60.00000 * 13 3 2 36 36 H 1.09000 * 117.49943 * 0.02562 * 19 17 16 37 37 H 1.09000 * 117.49792 * 145.02012 * 19 17 16 38 38 H 1.09000 * 109.47543 * 351.38299 * 22 20 19 39 39 H 1.09005 * 109.46809 * 111.38156 * 22 20 19 40 40 H 1.08997 * 109.47455 * 231.37710 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 1.5377 2.1530 1.2304 6 1 0.9168 3.0310 1.1313 7 6 1.8708 1.6820 2.4827 8 7 2.6272 0.6130 2.6034 9 14 1.2475 2.5622 4.0079 10 1 -0.0605 1.9867 4.4118 11 1 2.2256 2.3917 5.1122 12 1 1.0820 4.0080 3.7121 13 6 1.5300 2.1638 -1.2493 14 6 2.0324 1.4532 -2.4797 15 7 1.4325 0.4769 -3.1174 16 6 2.2434 0.1625 -4.1432 17 6 1.9998 -0.9060 -5.1776 18 1 1.3575 -1.7281 -4.8620 19 6 3.1444 -1.2328 -6.1389 20 6 1.9186 -0.4672 -6.6411 21 1 1.2226 -1.0005 -7.2886 22 6 2.0911 1.0229 -6.9424 23 7 3.2756 0.9494 -4.0788 24 8 3.1709 1.7025 -3.1337 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9334 2.4701 -0.0011 31 1 3.9337 0.9285 0.8892 32 1 3.9330 0.9288 -0.8908 33 1 2.8619 0.2818 3.4844 34 1 1.8938 3.1913 -1.2495 35 1 0.4400 2.1638 -1.2493 36 1 4.0738 -0.6752 -6.0229 37 1 3.2548 -2.2698 -6.4559 38 1 3.0709 1.3525 -6.5968 39 1 2.0102 1.1881 -8.0168 40 1 1.3149 1.5897 -6.4283 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234119563.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:22 Heat of formation + Delta-G solvation = 75.989118 kcal Electronic energy + Delta-G solvation = -20770.401519 eV Core-core repulsion = 17782.023115 eV Total energy + Delta-G solvation = -2988.378404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.01759 -38.20043 -37.05382 -34.78674 -32.42454 -31.07818 -29.20793 -28.71766 -26.75934 -25.26555 -24.74404 -22.92393 -22.03819 -21.14230 -19.99550 -18.46241 -17.61505 -16.87605 -15.81336 -15.60182 -14.80645 -14.58685 -13.95187 -13.54129 -13.34473 -13.30368 -12.68031 -12.32289 -12.20262 -12.00323 -11.81990 -11.59326 -11.45825 -11.37395 -11.00302 -10.90522 -10.69360 -10.50996 -10.43402 -10.33463 -10.21834 -10.19956 -9.71553 -9.41156 -9.35007 -8.96517 -8.68154 -8.35672 -6.01074 -4.11646 1.70020 2.65388 3.27867 3.35622 3.37138 3.48221 3.74102 3.88999 4.38549 4.46288 4.60842 4.87392 4.96616 5.17865 5.25567 5.56802 5.63710 5.66652 5.79860 5.87148 5.97969 6.05013 6.11438 6.18026 6.25442 6.42009 6.52340 6.59531 6.63321 6.79276 6.87692 7.07717 7.12003 7.35605 7.49687 7.64538 7.72862 7.98037 8.14314 8.37246 8.72949 8.86875 9.53007 11.00090 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.042279 B = 0.004795 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.103434 B = 5838.008999 C = 5941.626210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.108 4.108 3 C 0.079 3.921 4 C -0.135 4.135 5 C -0.503 4.503 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C -0.028 4.028 14 C 0.222 3.778 15 N -0.488 5.488 16 C 0.196 3.804 17 C -0.070 4.070 18 H 0.131 0.869 19 C -0.158 4.158 20 C -0.133 4.133 21 H 0.114 0.886 22 C -0.126 4.126 23 N -0.400 5.400 24 O 0.065 5.935 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.021 0.979 28 H 0.015 0.985 29 H 0.091 0.909 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.003 0.997 33 H 0.260 0.740 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -1.080 -13.232 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.146 4.146 3 C 0.078 3.922 4 C -0.193 4.193 5 C -0.541 4.541 6 H 0.077 0.923 7 C -0.133 4.133 8 N -0.520 5.520 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 C 0.003 3.997 15 N -0.221 5.221 16 C -0.076 4.076 17 C -0.089 4.089 18 H 0.149 0.851 19 C -0.196 4.196 20 C -0.152 4.152 21 H 0.132 0.868 22 C -0.183 4.183 23 N -0.112 5.112 24 O 0.010 5.990 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.040 0.960 28 H 0.034 0.966 29 H 0.109 0.891 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.716 -1.498 -13.710 13.811 hybrid contribution -0.334 0.382 1.074 1.188 sum -1.050 -1.116 -12.636 12.729 Atomic orbital electron populations 1.21609 0.97797 0.98360 1.00870 1.21527 0.94455 0.98168 1.00428 1.18192 0.92527 0.92514 0.88999 1.21902 0.97683 0.99391 1.00334 1.20887 1.31624 1.12033 0.89552 0.92301 1.24851 0.94835 0.94856 0.98744 1.69809 1.36332 1.22656 1.23252 0.86610 0.78585 0.80091 0.82813 1.20724 1.21339 1.19905 1.20936 1.01522 0.98219 0.85987 1.29399 0.82101 0.92245 0.95950 1.71909 1.29567 1.13962 1.06688 1.24576 0.88252 0.98540 0.96249 1.20112 1.04577 0.96951 0.87306 0.85129 1.23220 0.93515 1.01566 1.01306 1.22454 1.01113 0.97273 0.94409 0.86846 1.21394 1.02536 0.93077 1.01280 1.74465 1.22975 1.07010 1.06738 1.85281 1.38443 1.45656 1.29650 0.92274 0.94383 0.95984 0.96599 0.89111 0.95004 0.89379 0.97800 0.92953 0.89521 0.88118 0.87857 0.87845 0.91720 0.91964 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.74 9.31 37.16 0.35 -2.40 16 2 C -0.11 -2.50 4.50 -26.73 -0.12 -2.62 16 3 C 0.08 1.79 0.30 -155.65 -0.05 1.74 16 4 C -0.14 -3.14 8.00 37.16 0.30 -2.84 16 5 C -0.50 -12.32 6.75 -34.44 -0.23 -12.56 16 6 H 0.06 1.41 7.74 -52.49 -0.41 1.01 16 7 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 8 N -0.88 -23.22 9.36 55.43 0.52 -22.70 16 9 Si 0.89 20.01 29.54 -169.99 -5.02 14.99 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 C -0.03 -0.54 4.50 -27.88 -0.13 -0.66 16 14 C 0.22 4.30 5.74 -13.05 -0.07 4.23 16 15 N -0.49 -9.46 10.80 -9.87 -0.11 -9.57 16 16 C 0.20 3.46 6.88 -156.38 -1.08 2.38 16 17 C -0.07 -0.96 6.33 -91.77 -0.58 -1.54 16 18 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 19 C -0.16 -1.79 9.79 -26.73 -0.26 -2.05 16 20 C -0.13 -1.47 6.41 -90.62 -0.58 -2.05 16 21 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 22 C -0.13 -1.46 9.13 37.16 0.34 -1.12 16 23 N -0.40 -7.36 10.92 30.90 0.34 -7.02 16 24 O 0.07 1.25 10.71 18.11 0.19 1.45 16 25 H 0.06 1.32 7.22 -51.93 -0.37 0.94 16 26 H 0.04 0.76 6.43 -51.93 -0.33 0.42 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.36 6.67 -51.93 -0.35 0.01 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 32 H 0.00 0.07 6.76 -51.93 -0.35 -0.28 16 33 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 34 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.10 1.89 6.43 -51.93 -0.33 1.56 16 36 H 0.10 1.29 7.82 -51.93 -0.41 0.89 16 37 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.84 7.22 -51.93 -0.37 0.46 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 317.31 15.07 4.78 4.78 Total: -1.00 -26.61 317.31 -7.58 -34.19 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.07 Total: 1.72 kcal Atomic # 6 Polarization: -15.63 SS G_CDS: -2.21 Total: -17.84 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.75 Total: -39.29 kcal Atomic # 8 Polarization: 1.25 SS G_CDS: 0.19 Total: 1.45 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.61 -7.58 -34.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234119563.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.177 kcal (2) G-P(sol) polarization free energy of solvation -26.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds