Wall clock time and date at job start Mon Mar 30 2020 07:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46889 * 2 1 4 4 C 1.50699 * 109.47129 * 119.99995 * 2 1 3 5 5 H 1.08003 * 119.99854 * 119.99973 * 4 2 1 6 6 C 1.37874 * 120.00412 * 299.99989 * 4 2 1 7 7 N 1.31518 * 119.99659 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00311 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46830 * 90.00181 * 8 6 4 10 10 H 1.48502 * 109.47461 * 210.00109 * 8 6 4 11 11 H 1.48502 * 109.47157 * 330.00432 * 8 6 4 12 12 C 1.52999 * 109.46987 * 240.00350 * 2 1 3 13 13 C 1.50699 * 109.47111 * 64.99786 * 12 2 1 14 14 N 1.31136 * 126.55033 * 90.30716 * 13 12 2 15 15 C 1.34493 * 105.61213 * 180.11923 * 14 13 12 16 16 C 1.50703 * 126.28560 * 179.90029 * 15 14 13 17 17 C 1.53000 * 109.46912 * 119.71430 * 16 15 14 18 18 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.46963 * 299.99499 * 18 17 16 20 20 C 1.52997 * 109.47092 * 60.00194 * 19 18 17 21 21 C 1.53002 * 109.46966 * 239.71342 * 16 15 14 22 22 N 1.29950 * 107.42929 * 359.63560 * 15 14 13 23 23 O 1.21301 * 110.24906 * 0.22894 * 22 15 14 24 24 H 1.09000 * 109.47434 * 59.99512 * 1 2 3 25 25 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47368 * 300.00053 * 1 2 3 27 27 H 0.97001 * 119.99814 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.46854 * 304.99801 * 12 2 1 29 29 H 1.09002 * 109.47363 * 185.00062 * 12 2 1 30 30 H 1.09002 * 109.47152 * 359.71202 * 16 15 14 31 31 H 1.09001 * 109.47194 * 299.99742 * 17 16 15 32 32 H 1.08992 * 109.47399 * 59.99914 * 17 16 15 33 33 H 1.09000 * 109.47437 * 180.02562 * 18 17 16 34 34 H 1.09002 * 109.47508 * 59.99571 * 18 17 16 35 35 H 1.09002 * 109.47067 * 300.00341 * 19 18 17 36 36 H 1.09000 * 109.47312 * 180.02562 * 19 18 17 37 37 H 1.09001 * 109.47375 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47497 * 59.99850 * 20 19 18 39 39 H 1.09002 * 109.47075 * 299.99352 * 21 16 15 40 40 H 1.08996 * 109.47407 * 60.00310 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3432 -0.9494 5.1120 11 1 2.4860 -2.5663 3.7118 12 6 2.0400 -0.7212 -1.2493 13 6 1.6412 0.0572 -2.4766 14 7 2.3373 1.0014 -3.0628 15 6 1.5919 1.4052 -4.1069 16 6 1.9543 2.4807 -5.0984 17 6 2.0131 1.8795 -6.5041 18 6 2.3816 2.9713 -7.5107 19 6 1.3252 4.0774 -7.4729 20 6 1.2663 4.6786 -6.0672 21 6 0.8974 3.5865 -5.0604 22 7 0.5044 0.6939 -4.1071 23 8 0.5131 -0.0866 -3.1786 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7090 1.1613 3.4844 28 1 1.6053 -1.7197 -1.2952 29 1 3.1263 -0.7994 -1.2057 30 1 2.9273 2.8992 -4.8412 31 1 2.7660 1.0918 -6.5312 32 1 1.0401 1.4611 -6.7614 33 1 2.4231 2.5432 -8.5122 34 1 3.3548 3.3894 -7.2533 35 1 0.3520 3.6593 -7.7303 36 1 1.5874 4.8550 -8.1903 37 1 0.5133 5.4663 -6.0401 38 1 2.2394 5.0967 -5.8097 39 1 -0.0756 3.1680 -5.3178 40 1 0.8555 4.0148 -4.0590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235089302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:59 Heat of formation + Delta-G solvation = 8.475217 kcal Electronic energy + Delta-G solvation = -19992.172512 eV Core-core repulsion = 17000.866486 eV Total energy + Delta-G solvation = -2991.306026 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -46.53386 -39.68825 -37.46933 -36.53824 -34.42854 -32.78241 -31.76354 -31.28466 -28.32847 -27.25016 -25.46412 -24.35902 -23.58047 -22.38656 -21.43646 -20.44738 -19.11173 -18.52482 -18.15051 -16.71499 -16.56114 -15.67420 -15.52272 -15.20457 -15.14275 -14.98531 -14.65949 -13.87787 -13.74831 -13.54159 -13.39176 -13.20426 -13.06987 -12.82260 -12.65124 -12.46175 -12.31942 -12.17602 -12.11271 -11.98616 -11.76046 -11.73248 -11.45993 -11.27498 -11.11762 -10.95204 -10.63681 -10.45248 -8.09418 -6.24527 0.16958 1.24924 1.47664 1.48573 1.58581 1.90990 2.46375 2.64353 3.09324 3.20577 3.69249 3.72942 3.82349 4.13194 4.24895 4.27886 4.36922 4.43773 4.48315 4.49523 4.52223 4.60785 4.69176 4.81771 4.89666 4.99335 5.02481 5.07073 5.09177 5.12420 5.17976 5.20820 5.29606 5.31473 5.33267 5.51441 5.59845 5.83640 6.03585 6.27459 6.86382 7.18794 7.45051 8.96571 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.041738 B = 0.003763 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.689059 B = 7439.303074 C = 7615.151233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.050 3.950 3 H -0.005 1.005 4 C -0.529 4.529 5 H 0.072 0.928 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.260 1.260 12 C -0.016 4.016 13 C 0.211 3.789 14 N -0.516 5.516 15 C 0.171 3.829 16 C 0.006 3.994 17 C -0.105 4.105 18 C -0.112 4.112 19 C -0.119 4.119 20 C -0.112 4.112 21 C -0.109 4.109 22 N -0.406 5.406 23 O 0.058 5.942 24 H 0.009 0.991 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.261 0.739 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 3.669 -18.095 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.031 3.969 3 H 0.013 0.987 4 C -0.567 4.567 5 H 0.090 0.910 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.184 1.184 12 C -0.055 4.055 13 C -0.008 4.008 14 N -0.250 5.250 15 C -0.102 4.102 16 C -0.014 4.014 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.149 4.149 21 C -0.148 4.148 22 N -0.119 5.119 23 O 0.005 5.995 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.658 4.105 -18.610 19.129 hybrid contribution -0.020 -0.382 1.483 1.532 sum 1.638 3.723 -17.126 17.603 Atomic orbital electron populations 1.21713 0.98163 0.99768 0.99019 1.18599 0.93077 0.94500 0.90754 0.98659 1.21442 1.31585 1.12974 0.90729 0.90957 1.25791 0.95116 0.95611 1.02257 1.70050 1.37624 1.24299 1.24059 0.85506 0.77755 0.79452 0.78646 1.20389 1.21445 1.18421 1.20638 1.03065 0.97774 0.84009 1.29463 0.81602 0.93716 0.95994 1.71951 1.31159 1.13121 1.08815 1.26453 0.87484 0.99971 0.96301 1.19793 1.01117 0.89647 0.90869 1.21546 1.01936 0.98809 0.92036 1.21521 0.99565 0.95199 0.98618 1.21574 0.99267 0.98307 0.96503 1.21526 1.02620 0.96558 0.94231 1.21575 0.97548 0.95597 1.00074 1.74472 1.22874 1.06767 1.07790 1.85267 1.38722 1.45876 1.29591 0.97191 0.93723 0.92478 0.93033 0.86940 0.87251 0.87965 0.92125 0.92183 0.90107 0.90818 0.92167 0.89832 0.90577 0.90868 0.92246 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.21 8.78 71.98 0.63 -5.58 16 2 C 0.05 2.45 2.29 -11.54 -0.03 2.42 16 3 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 4 C -0.53 -27.40 8.56 25.60 0.22 -27.18 16 5 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 6 C 0.01 0.59 5.30 84.65 0.45 1.03 16 7 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 8 Si 0.96 41.99 29.54 68.60 2.03 44.01 16 9 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 12 C -0.02 -0.62 5.26 29.85 0.16 -0.46 16 13 C 0.21 8.27 6.92 88.38 0.61 8.89 16 14 N -0.52 -20.37 11.55 -303.17 -3.50 -23.87 16 15 C 0.17 6.01 6.72 138.46 0.93 6.94 16 16 C 0.01 0.15 2.66 -11.54 -0.03 0.12 16 17 C -0.10 -2.24 5.19 30.59 0.16 -2.08 16 18 C -0.11 -1.66 5.92 30.60 0.18 -1.48 16 19 C -0.12 -1.68 5.92 30.59 0.18 -1.49 16 20 C -0.11 -1.87 5.92 30.61 0.18 -1.69 16 21 C -0.11 -2.62 5.19 30.61 0.16 -2.46 16 22 N -0.41 -15.12 12.16 -60.30 -0.73 -15.86 16 23 O 0.06 2.26 10.75 74.78 0.80 3.06 16 24 H 0.01 0.42 6.93 -2.39 -0.02 0.41 16 25 H 0.04 1.98 8.14 -2.39 -0.02 1.97 16 26 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 27 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 29 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 30 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -61.10 322.46 3.65 -57.46 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.01 Total: 10.63 kcal Atomic # 6 Polarization: -26.82 SS G_CDS: 3.80 Total: -23.02 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -3.99 Total: -92.15 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.80 Total: 3.06 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -61.10 3.65 -57.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235089302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.932 kcal (2) G-P(sol) polarization free energy of solvation -61.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds