Wall clock time and date at job start Mon Mar 30 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47023 * 2 1 4 4 C 1.52996 * 109.47255 * 120.00273 * 2 1 3 5 5 C 1.50700 * 109.46977 * 294.99695 * 4 2 1 6 6 H 1.07994 * 119.99957 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99705 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00204 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47233 * 89.99717 * 9 7 5 11 11 H 1.48504 * 109.46892 * 209.99673 * 9 7 5 12 12 H 1.48494 * 109.47077 * 329.99535 * 9 7 5 13 13 C 1.50699 * 109.46543 * 240.00487 * 2 1 3 14 14 N 1.31127 * 126.55225 * 120.25596 * 13 2 1 15 15 C 1.34503 * 105.61398 * 180.11758 * 14 13 2 16 16 C 1.50697 * 126.28786 * 179.90503 * 15 14 13 17 17 C 1.52997 * 109.47466 * 119.71068 * 16 15 14 18 18 C 1.53000 * 109.47060 * 180.02562 * 17 16 15 19 19 C 1.53002 * 109.47233 * 299.99657 * 18 17 16 20 20 C 1.52997 * 109.46817 * 60.00194 * 19 18 17 21 21 C 1.52999 * 109.46961 * 239.71418 * 16 15 14 22 22 N 1.29942 * 107.42405 * 359.63805 * 15 14 13 23 23 O 1.21303 * 110.25377 * 0.22417 * 22 15 14 24 24 H 1.09010 * 109.46857 * 299.99680 * 1 2 3 25 25 H 1.08998 * 109.47494 * 59.99275 * 1 2 3 26 26 H 1.08996 * 109.47479 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47198 * 54.99752 * 4 2 1 28 28 H 1.09002 * 109.47219 * 174.99403 * 4 2 1 29 29 H 0.97003 * 119.99879 * 180.02562 * 8 7 5 30 30 H 1.09002 * 109.47120 * 359.70821 * 16 15 14 31 31 H 1.09002 * 109.47153 * 59.99773 * 17 16 15 32 32 H 1.09001 * 109.46832 * 299.99964 * 17 16 15 33 33 H 1.08992 * 109.47399 * 59.99823 * 18 17 16 34 34 H 1.09004 * 109.46724 * 180.02562 * 18 17 16 35 35 H 1.08993 * 109.47662 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47075 * 300.00932 * 19 18 17 37 37 H 1.09002 * 109.47153 * 60.00231 * 20 19 18 38 38 H 1.09001 * 109.47289 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47486 * 59.99568 * 21 16 15 40 40 H 1.09002 * 109.46716 * 299.99650 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 1 1.0801 0.9741 2.3757 7 6 1.9934 -0.4018 3.7282 8 7 2.6765 -1.5189 3.8510 9 14 1.4987 0.5626 5.2496 10 1 0.1718 0.0934 5.7233 11 1 2.5083 0.3531 6.3184 12 1 1.4228 2.0077 4.9167 13 6 2.0322 -0.7103 -1.2306 14 7 2.7929 -0.2020 -2.1699 15 6 2.9810 -1.1933 -3.0594 16 6 3.7882 -1.1108 -4.3292 17 6 4.9257 -2.1327 -4.2777 18 6 5.7456 -2.0485 -5.5668 19 6 4.8437 -2.3494 -6.7655 20 6 3.7062 -1.3276 -6.8170 21 6 2.8859 -1.4120 -5.5276 22 7 2.3435 -2.2367 -2.6197 23 8 1.7918 -1.9804 -1.5702 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.6054 -1.7198 1.2951 28 1 3.1264 -0.7996 1.2054 29 1 2.9238 -1.8418 4.7316 30 1 4.2045 -0.1086 -4.4307 31 1 4.5095 -3.1350 -4.1762 32 1 5.5685 -1.9181 -3.4240 33 1 6.1619 -1.0463 -5.6678 34 1 6.5558 -2.7769 -5.5302 35 1 5.4278 -2.2899 -7.6838 36 1 4.4274 -3.3517 -6.6644 37 1 4.1225 -0.3253 -6.9180 38 1 3.0633 -1.5422 -7.6707 39 1 2.0755 -0.6840 -5.5643 40 1 2.4696 -2.4143 -5.4260 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235094850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:34 Heat of formation + Delta-G solvation = 4.382485 kcal Electronic energy + Delta-G solvation = -19879.026520 eV Core-core repulsion = 16887.543020 eV Total energy + Delta-G solvation = -2991.483500 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -46.57797 -39.70089 -37.54400 -36.55519 -34.56653 -32.95484 -31.76757 -31.20137 -29.01065 -26.31758 -25.50779 -24.61870 -23.58423 -23.08871 -21.23332 -20.33240 -19.03270 -18.64405 -18.21708 -16.72330 -16.50193 -16.17945 -15.49839 -15.20885 -15.12338 -14.98414 -14.43629 -13.89511 -13.87005 -13.66051 -13.51485 -13.20780 -13.04610 -12.79645 -12.65835 -12.55548 -12.35018 -12.27383 -12.11769 -12.08407 -11.89110 -11.64892 -11.46476 -11.29463 -11.24683 -11.13582 -10.69943 -10.55300 -8.18456 -6.29458 0.12032 1.19990 1.46676 1.47342 1.58258 1.86253 2.42923 2.57938 3.04761 3.16978 3.65040 3.72144 3.80062 4.07687 4.14349 4.24200 4.27165 4.29478 4.38677 4.47788 4.51864 4.53728 4.61888 4.77577 4.83700 4.99495 5.02026 5.03270 5.08293 5.11488 5.17772 5.20310 5.30416 5.33179 5.35015 5.39594 5.51296 5.56992 5.79065 6.15474 6.84642 7.13188 7.40021 8.94186 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.042291 B = 0.003693 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.914114 B = 7580.051566 C = 7885.494171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.008 3.992 3 H 0.112 0.888 4 C 0.037 3.963 5 C -0.529 4.529 6 H 0.079 0.921 7 C 0.000 4.000 8 N -0.936 5.936 9 Si 0.967 3.033 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.258 1.258 13 C 0.211 3.789 14 N -0.512 5.512 15 C 0.173 3.827 16 C 0.007 3.993 17 C -0.110 4.110 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.111 4.111 21 C -0.106 4.106 22 N -0.407 5.407 23 O 0.055 5.945 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.004 0.996 28 H -0.014 1.014 29 H 0.263 0.737 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.479 1.657 -19.767 19.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.012 4.012 3 H 0.130 0.870 4 C -0.001 4.001 5 C -0.567 4.567 6 H 0.097 0.903 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.197 1.197 11 H -0.216 1.216 12 H -0.181 1.181 13 C -0.008 4.008 14 N -0.246 5.246 15 C -0.100 4.100 16 C -0.013 4.013 17 C -0.149 4.149 18 C -0.149 4.149 19 C -0.157 4.157 20 C -0.148 4.148 21 C -0.144 4.144 22 N -0.120 5.120 23 O 0.003 5.997 24 H 0.104 0.896 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.004 0.996 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.762 1.093 -20.252 20.358 hybrid contribution -0.078 -0.025 1.549 1.551 sum 1.684 1.068 -18.703 18.809 Atomic orbital electron populations 1.21732 0.90769 1.02786 1.03297 1.20149 0.98338 0.98287 0.84433 0.86966 1.19025 0.94463 0.95416 0.91175 1.21505 1.35237 1.09096 0.90821 0.90258 1.25975 0.94942 0.95978 1.02868 1.70120 1.39897 1.23035 1.24534 0.85409 0.77861 0.79442 0.78128 1.19706 1.21561 1.18149 1.29537 0.91787 0.81935 0.97574 1.71951 1.18146 1.30587 1.03943 1.26512 0.98994 0.84610 0.99891 1.19816 0.93718 1.02555 0.85241 1.21578 0.95808 0.97886 0.99613 1.21513 0.97699 1.03049 0.92598 1.21579 0.96743 0.99010 0.98406 1.21526 0.97144 1.00515 0.95654 1.21568 0.97550 1.01695 0.93636 1.74510 1.14497 1.24554 0.98454 1.85263 1.54950 1.30141 1.29327 0.89600 0.91284 0.92673 0.97789 0.99586 0.92844 0.87533 0.92471 0.93008 0.90638 0.90601 0.89791 0.92334 0.90616 0.90183 0.92047 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.30 8.99 71.98 0.65 -3.65 16 2 C 0.01 0.33 2.81 -11.54 -0.03 0.30 16 3 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 4 C 0.04 1.89 4.43 29.85 0.13 2.03 16 5 C -0.53 -27.91 8.41 25.60 0.22 -27.70 16 6 H 0.08 3.84 7.05 -2.91 -0.02 3.82 16 7 C 0.00 0.01 5.46 84.66 0.46 0.48 16 8 N -0.94 -55.93 13.29 21.45 0.28 -55.64 16 9 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 10 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 13 C 0.21 8.48 7.02 88.38 0.62 9.10 16 14 N -0.51 -19.85 11.55 -303.18 -3.50 -23.35 16 15 C 0.17 6.06 6.72 138.46 0.93 6.99 16 16 C 0.01 0.17 2.66 -11.54 -0.03 0.14 16 17 C -0.11 -2.57 5.19 30.59 0.16 -2.42 16 18 C -0.11 -1.78 5.92 30.60 0.18 -1.59 16 19 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 20 C -0.11 -1.60 5.92 30.61 0.18 -1.42 16 21 C -0.11 -2.23 5.19 30.61 0.16 -2.07 16 22 N -0.41 -15.62 12.16 -60.30 -0.73 -16.35 16 23 O 0.05 2.26 11.31 74.78 0.85 3.11 16 24 H 0.09 2.87 6.95 -2.38 -0.02 2.85 16 25 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 28 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 29 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -63.77 326.38 3.73 -60.04 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 1.00 Total: 9.02 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.81 Total: -21.28 kcal Atomic # 7 Polarization: -91.39 SS G_CDS: -3.95 Total: -95.34 kcal Atomic # 8 Polarization: 2.26 SS G_CDS: 0.85 Total: 3.11 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -63.77 3.73 -60.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235094850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.421 kcal (2) G-P(sol) polarization free energy of solvation -63.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds