Wall clock time and date at job start Mon Mar 30 2020 07:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47466 * 2 1 4 4 C 1.53001 * 109.46980 * 120.00689 * 2 1 3 5 5 N 1.46908 * 109.46964 * 175.00045 * 4 2 1 6 6 N 1.46509 * 109.47233 * 240.00257 * 2 1 3 7 7 C 1.39659 * 119.99792 * 84.99695 * 6 2 1 8 8 C 1.38972 * 120.04912 * 0.02562 * 7 6 2 9 9 C 1.38120 * 120.03773 * 179.97438 * 8 7 6 10 10 C 1.38217 * 120.12663 * 0.28148 * 9 8 7 11 11 C 1.38775 * 120.09286 * 359.43840 * 10 9 8 12 12 O 1.35890 * 120.01981 * 180.25174 * 11 10 9 13 13 C 1.42899 * 116.99896 * 0.30766 * 12 11 10 14 14 C 1.53002 * 109.47265 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47291 * 180.02562 * 14 13 12 16 16 H 1.08004 * 120.00322 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99863 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00077 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99774 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46871 * 90.00256 * 19 17 15 21 21 H 1.48497 * 109.47205 * 210.00166 * 19 17 15 22 22 H 1.48503 * 109.47409 * 330.00174 * 19 17 15 23 23 C 1.38614 * 119.95978 * 0.56135 * 11 10 9 24 24 H 1.09002 * 109.46820 * 59.99932 * 1 2 3 25 25 H 1.09002 * 109.46637 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47178 * 299.99410 * 1 2 3 27 27 H 1.08997 * 109.46848 * 294.99553 * 4 2 1 28 28 H 1.08992 * 109.47725 * 54.99903 * 4 2 1 29 29 H 1.00903 * 110.99944 * 56.04562 * 5 4 2 30 30 H 1.00897 * 110.99581 * 180.02562 * 5 4 2 31 31 H 0.96999 * 119.99745 * 265.00352 * 6 2 1 32 32 H 1.07998 * 119.98425 * 359.95131 * 8 7 6 33 33 H 1.08002 * 119.93398 * 179.97438 * 9 8 7 34 34 H 1.07996 * 119.95468 * 179.70439 * 10 9 8 35 35 H 1.08998 * 109.47113 * 299.99748 * 13 12 11 36 36 H 1.08999 * 109.47280 * 59.99402 * 13 12 11 37 37 H 1.09006 * 109.46966 * 299.99791 * 14 13 12 38 38 H 1.08999 * 109.47197 * 59.99672 * 14 13 12 39 39 H 0.97005 * 120.00135 * 180.02562 * 18 17 15 40 40 H 1.08003 * 120.06243 * 179.74355 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5041 -0.8268 1.1903 6 7 2.0184 -0.6906 -1.1963 7 6 2.1517 0.0062 -2.3993 8 6 1.8219 1.3547 -2.4626 9 6 1.9544 2.0437 -3.6523 10 6 2.4094 1.3932 -4.7838 11 6 2.7458 0.0481 -4.7252 12 8 3.1978 -0.5887 -5.8373 13 6 3.3083 0.1895 -7.0307 14 6 3.8300 -0.6915 -8.1676 15 6 3.9472 0.1293 -9.4260 16 1 3.6762 1.1747 -9.4160 17 6 4.4004 -0.4543 -10.5900 18 7 4.7308 -1.7272 -10.6020 19 14 4.5449 0.5630 -12.1501 20 1 5.8980 1.1706 -12.2211 21 1 4.3317 -0.3103 -13.3320 22 1 3.5198 1.6374 -12.1372 23 6 2.6143 -0.6470 -3.5332 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.7517 -0.1585 2.1369 28 1 1.6054 -1.7199 1.2951 29 1 3.9280 0.0824 1.0824 30 1 3.8655 -1.3003 2.0047 31 1 2.2491 -1.6318 -1.1527 32 1 1.4615 1.8642 -1.5812 33 1 1.6972 3.0916 -3.6997 34 1 2.5073 1.9335 -5.7137 35 1 2.3288 0.5859 -7.2980 36 1 4.0008 1.0145 -6.8637 37 1 4.8098 -1.0875 -7.9000 38 1 3.1379 -1.5167 -8.3347 39 1 5.0500 -2.1377 -11.4209 40 1 2.8717 -1.6949 -3.4867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235114966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:47 Heat of formation + Delta-G solvation = -25.548044 kcal Electronic energy + Delta-G solvation = -19098.689384 eV Core-core repulsion = 16105.907999 eV Total energy + Delta-G solvation = -2992.781385 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.74300 -38.22782 -36.39835 -33.64986 -33.24967 -31.33917 -30.56254 -28.99787 -27.98111 -25.24913 -24.88477 -22.62262 -22.20426 -20.75985 -20.13671 -17.99446 -16.62950 -16.40057 -15.73973 -15.59407 -15.52983 -15.17769 -14.89516 -14.52806 -14.36463 -13.65656 -13.34361 -13.25097 -12.69320 -12.62821 -12.41919 -12.26952 -12.15228 -11.48578 -11.39828 -11.29961 -10.96877 -10.85343 -10.69574 -10.36729 -9.93474 -9.63813 -9.58545 -9.23883 -9.08905 -8.40404 -7.84589 -7.18877 -6.05648 -4.09861 1.81782 1.97852 3.30739 3.31862 3.36820 3.40142 4.05543 4.15378 4.22554 4.47156 4.48199 4.77378 5.05170 5.07023 5.16511 5.30712 5.32718 5.37969 5.44330 5.62191 5.65094 5.73950 5.87123 5.95561 6.14836 6.16757 6.23502 6.51845 6.67854 6.70582 6.76680 6.86115 6.99144 7.02213 7.51946 7.59509 7.71344 7.84480 7.90639 8.19763 8.30747 8.95947 9.54100 11.06051 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.044927 B = 0.002999 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.087823 B = 9334.172297 C = 9657.729298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.152 3.848 3 H 0.075 0.925 4 C 0.053 3.947 5 N -0.846 5.846 6 N -0.728 5.728 7 C 0.254 3.746 8 C -0.250 4.250 9 C -0.037 4.037 10 C -0.268 4.268 11 C 0.188 3.812 12 O -0.317 6.317 13 C 0.067 3.933 14 C 0.025 3.975 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.898 3.102 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.239 4.239 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.343 0.657 30 H 0.341 0.659 31 H 0.402 0.598 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.027 0.973 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.889 4.611 24.312 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.045 3.955 3 H 0.093 0.907 4 C -0.079 4.079 5 N -0.376 5.376 6 N -0.358 5.358 7 C 0.150 3.850 8 C -0.272 4.272 9 C -0.056 4.056 10 C -0.289 4.289 11 C 0.140 3.860 12 O -0.229 6.229 13 C -0.007 4.007 14 C -0.012 4.012 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.198 1.198 23 C -0.263 4.263 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.156 0.844 30 H 0.154 0.846 31 H 0.237 0.763 32 H 0.131 0.869 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.954 3.943 23.647 24.961 hybrid contribution 0.134 0.957 -0.067 0.969 sum -6.820 4.900 23.580 25.031 Atomic orbital electron populations 1.22288 0.95730 1.02568 1.02345 1.20847 0.93327 0.96672 0.84629 0.90662 1.22093 0.89058 1.00835 0.95881 1.58580 1.04880 1.26632 1.47465 1.44427 1.72989 1.12329 1.06045 1.17351 0.91538 0.90870 0.85231 1.20378 1.14707 0.93321 0.98828 1.20594 0.94684 0.98601 0.91724 1.21111 1.12622 0.94758 1.00361 1.18825 0.89722 0.90502 0.86930 1.86142 1.78933 1.40300 1.17574 1.23294 0.99853 0.95455 0.82130 1.19125 0.97307 0.95236 0.89567 1.20989 1.44946 0.96414 0.93964 0.92360 1.24991 0.95152 0.95003 0.99082 1.69979 1.43921 1.10931 1.28025 0.86493 0.78515 0.79965 0.82442 1.20513 1.21082 1.19762 1.19659 1.15235 1.00748 0.90620 0.91570 0.92238 0.92148 0.94433 0.90581 0.84434 0.84615 0.76334 0.86880 0.86582 0.85738 0.93152 0.93149 0.95442 0.95447 0.92750 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.43 37.16 0.35 -0.90 16 2 C 0.15 1.21 2.51 -67.92 -0.17 1.04 16 3 H 0.08 0.63 6.48 -51.93 -0.34 0.29 16 4 C 0.05 0.33 6.34 -3.82 -0.02 0.31 16 5 N -0.85 -5.76 9.35 -10.37 -0.10 -5.85 16 6 N -0.73 -7.77 4.97 -52.18 -0.26 -8.03 16 7 C 0.25 3.51 6.63 -83.81 -0.56 2.95 16 8 C -0.25 -3.31 8.85 -39.35 -0.35 -3.65 16 9 C -0.04 -0.53 10.03 -39.63 -0.40 -0.93 16 10 C -0.27 -4.55 9.04 -39.39 -0.36 -4.90 16 11 C 0.19 3.54 6.68 -39.24 -0.26 3.28 16 12 O -0.32 -6.93 10.13 -19.40 -0.20 -7.12 16 13 C 0.07 1.50 4.68 37.16 0.17 1.68 16 14 C 0.02 0.67 5.34 -27.88 -0.15 0.52 16 15 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 16 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 19 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 C -0.24 -3.96 9.83 -39.24 -0.39 -4.34 16 24 H 0.07 0.59 7.71 -51.93 -0.40 0.19 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.34 2.28 8.99 -39.29 -0.35 1.93 16 30 H 0.34 1.75 9.08 -39.29 -0.36 1.39 16 31 H 0.40 4.22 8.61 -40.82 -0.35 3.87 16 32 H 0.11 1.24 6.11 -52.49 -0.32 0.92 16 33 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.12 2.10 6.29 -52.49 -0.33 1.77 16 35 H 0.05 1.08 7.65 -51.93 -0.40 0.68 16 36 H 0.05 1.08 7.67 -51.93 -0.40 0.68 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.12 1.97 8.06 -52.48 -0.42 1.55 16 LS Contribution 332.13 15.07 5.01 5.01 Total: -1.00 -31.30 332.13 -8.54 -39.84 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.17 Total: 4.40 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: -2.54 Total: -18.60 kcal Atomic # 7 Polarization: -40.48 SS G_CDS: 0.38 Total: -40.10 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.20 Total: -7.12 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.30 -8.54 -39.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235114966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.289 kcal (2) G-P(sol) polarization free energy of solvation -31.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds