Wall clock time and date at job start Mon Mar 30 2020 07:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47180 * 2 1 4 4 C 1.53003 * 109.47039 * 240.00132 * 2 1 3 5 5 C 1.50697 * 109.46975 * 64.99910 * 4 2 1 6 6 H 1.08000 * 120.00372 * 0.02562 * 5 4 2 7 7 C 1.37887 * 119.99869 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00003 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 119.99730 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47500 * 89.99806 * 9 7 5 11 11 H 1.48500 * 109.47343 * 210.00124 * 9 7 5 12 12 H 1.48503 * 109.47250 * 329.99768 * 9 7 5 13 13 C 1.50697 * 109.47092 * 120.00044 * 2 1 3 14 14 N 1.31128 * 126.54986 * 239.99946 * 13 2 1 15 15 C 1.34495 * 105.61627 * 179.97438 * 14 13 2 16 16 C 1.50700 * 126.29011 * 179.73541 * 15 14 13 17 17 C 1.52997 * 109.47257 * 240.00078 * 16 15 14 18 18 C 1.53001 * 109.47230 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47085 * 59.99802 * 18 17 16 20 20 C 1.52997 * 109.47248 * 300.00187 * 19 18 17 21 21 C 1.52995 * 109.47076 * 60.00181 * 20 19 18 22 22 N 1.29949 * 107.42344 * 0.02562 * 15 14 13 23 23 O 1.21303 * 110.24914 * 359.97438 * 22 15 14 24 24 H 1.08995 * 109.46908 * 300.00309 * 1 2 3 25 25 H 1.09005 * 109.46776 * 59.99722 * 1 2 3 26 26 H 1.09002 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46668 * 184.99926 * 4 2 1 28 28 H 1.08999 * 109.46819 * 304.99829 * 4 2 1 29 29 H 0.97006 * 119.99801 * 179.97438 * 8 7 5 30 30 H 1.08995 * 109.46921 * 0.02562 * 16 15 14 31 31 H 1.09003 * 109.46956 * 300.00100 * 17 16 15 32 32 H 1.08991 * 109.47178 * 59.99999 * 17 16 15 33 33 H 1.08995 * 109.46744 * 299.99819 * 18 17 16 34 34 H 1.08994 * 109.47187 * 179.97438 * 18 17 16 35 35 H 1.09004 * 109.46779 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47167 * 60.00088 * 19 18 17 37 37 H 1.09003 * 109.46956 * 300.00031 * 20 19 18 38 38 H 1.09005 * 109.47049 * 180.02562 * 20 19 18 39 39 H 1.09008 * 109.47093 * 180.02562 * 21 20 19 40 40 H 1.09003 * 109.47351 * 60.00092 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0807 0.9746 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 1.6458 0.2778 -4.7994 9 14 2.9636 -1.9883 -3.9028 10 1 2.0245 -3.1326 -4.0201 11 1 3.8127 -1.9181 -5.1191 12 1 3.8253 -2.1755 -2.7079 13 6 2.0324 -0.7104 1.2304 14 7 2.7893 -0.2007 2.1721 15 6 2.9810 -1.1931 3.0594 16 6 3.7923 -1.1122 4.3267 17 6 4.9260 -2.1381 4.2730 18 6 5.7494 -2.0563 5.5600 19 6 4.8492 -2.3534 6.7610 20 6 3.7155 -1.3274 6.8147 21 6 2.8922 -1.4093 5.5278 22 7 2.3432 -2.2366 2.6198 23 8 1.7914 -1.9802 1.5705 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.1264 -0.7994 -1.2056 28 1 1.6054 -1.7198 -1.2952 29 1 1.8937 -0.0447 -5.6800 30 1 4.2120 -0.1112 4.4261 31 1 4.5059 -3.1390 4.1738 32 1 5.5670 -1.9267 3.4172 33 1 6.1694 -1.0555 5.6595 34 1 6.5568 -2.7875 5.5219 35 1 5.4357 -2.2947 7.6779 36 1 4.4291 -3.3543 6.6614 37 1 4.1356 -0.3266 6.9143 38 1 3.0745 -1.5388 7.6707 39 1 2.0847 -0.6780 5.5659 40 1 2.4720 -2.4102 5.4282 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235411771.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:37 Heat of formation + Delta-G solvation = 24.816936 kcal Electronic energy + Delta-G solvation = -19954.080498 eV Core-core repulsion = 16963.483102 eV Total energy + Delta-G solvation = -2990.597396 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -45.20285 -38.85759 -36.01385 -35.22873 -32.68625 -31.68284 -31.01555 -30.07956 -27.73647 -24.69952 -24.34668 -22.85866 -22.82872 -21.59951 -20.14557 -19.15852 -17.61525 -17.21652 -16.73852 -15.80213 -14.83907 -14.56603 -14.42872 -14.32814 -14.08640 -13.67642 -13.01502 -12.91288 -12.70029 -12.45625 -12.26489 -12.17229 -11.53909 -11.41757 -11.39966 -11.25890 -11.20286 -10.96006 -10.81079 -10.66152 -10.53292 -10.45234 -10.19839 -10.11306 -9.90034 -9.36158 -9.28776 -8.62264 -6.12939 -4.12835 1.53501 2.55251 3.27141 3.28677 3.35303 3.39048 3.76579 4.27598 4.38577 4.51633 4.55042 4.67288 4.97190 5.00713 5.19306 5.20383 5.22972 5.26492 5.30566 5.41865 5.59041 5.66362 5.72302 5.77139 5.83796 5.89201 5.91242 5.91521 6.01792 6.05793 6.20293 6.20724 6.30953 6.46695 6.51252 6.80614 7.01081 7.15257 7.62323 8.39352 8.53421 8.89105 9.48023 10.99473 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.033905 B = 0.004138 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.637026 B = 6764.568357 C = 7225.376994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.009 3.991 3 H 0.111 0.889 4 C -0.008 4.008 5 C -0.521 4.521 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.874 3.126 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.213 3.787 14 N -0.498 5.498 15 C 0.168 3.832 16 C 0.009 3.991 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.111 4.111 22 N -0.395 5.395 23 O 0.072 5.928 24 H 0.042 0.958 25 H 0.090 0.910 26 H 0.057 0.943 27 H 0.021 0.979 28 H 0.024 0.976 29 H 0.265 0.735 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -3.902 20.787 21.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.012 4.012 3 H 0.129 0.871 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.702 3.298 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.191 1.191 13 C -0.007 4.007 14 N -0.231 5.231 15 C -0.105 4.105 16 C -0.011 4.011 17 C -0.151 4.151 18 C -0.154 4.154 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.149 4.149 22 N -0.105 5.105 23 O 0.016 5.984 24 H 0.061 0.939 25 H 0.109 0.891 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.385 -4.348 21.206 22.087 hybrid contribution 0.485 -0.787 -0.496 1.049 sum 4.870 -5.136 20.710 21.886 Atomic orbital electron populations 1.21800 0.92612 1.02583 1.02458 1.20120 0.96826 0.98843 0.85365 0.87076 1.19716 0.96643 0.96383 0.91837 1.20923 1.36483 1.09916 0.88521 0.90185 1.24938 0.95305 0.96879 0.95818 1.69887 1.46417 1.39104 0.98124 0.86860 0.80787 0.84315 0.77886 1.19995 1.21199 1.19146 1.29610 0.91676 0.81843 0.97538 1.71946 1.18121 1.29668 1.03407 1.25729 0.99858 0.85563 0.99385 1.19517 0.93445 1.01684 0.86467 1.21586 0.96171 0.99047 0.98268 1.21518 0.97779 1.02086 0.94032 1.21571 0.96903 0.99404 0.98026 1.21519 0.97182 0.99730 0.96986 1.21578 0.97622 1.02599 0.93127 1.74521 1.13488 1.23985 0.98483 1.85270 1.54342 1.30078 1.28705 0.93853 0.89139 0.92384 0.96047 0.95801 0.92518 0.88355 0.91185 0.91570 0.91636 0.91598 0.91889 0.91855 0.91652 0.91631 0.91672 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.99 37.16 0.33 -1.98 16 2 C 0.01 0.17 2.81 -91.77 -0.26 -0.09 16 3 H 0.11 2.11 8.14 -51.93 -0.42 1.68 16 4 C -0.01 -0.17 3.50 -27.88 -0.10 -0.27 16 5 C -0.52 -13.80 8.96 -34.44 -0.31 -14.11 16 6 H 0.08 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 8 N -0.90 -26.55 13.96 55.43 0.77 -25.77 16 9 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 13 C 0.21 4.00 7.02 -13.06 -0.09 3.90 16 14 N -0.50 -9.21 11.55 -9.87 -0.11 -9.33 16 15 C 0.17 2.79 6.72 -156.37 -1.05 1.74 16 16 C 0.01 0.11 2.66 -91.77 -0.24 -0.13 16 17 C -0.11 -1.26 5.19 -26.73 -0.14 -1.40 16 18 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 19 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 20 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 21 C -0.11 -1.18 5.18 -26.73 -0.14 -1.32 16 22 N -0.39 -7.04 12.16 30.90 0.38 -6.67 16 23 O 0.07 1.35 11.31 18.11 0.20 1.56 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 28 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 322.78 15.07 4.86 4.86 Total: -1.00 -29.33 322.78 -7.73 -37.06 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.60 Total: -3.13 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -2.57 Total: -15.10 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 1.04 Total: -41.76 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.20 Total: 1.56 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.33 -7.73 -37.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235411771.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.874 kcal (2) G-P(sol) polarization free energy of solvation -29.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds