Wall clock time and date at job start Mon Mar 30 2020 06:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30258 * 125.61867 * 2 1 4 4 C 1.34474 * 108.70072 * 180.02562 * 3 2 1 5 5 C 1.34331 * 107.67029 * 0.02562 * 4 3 2 6 6 C 1.50697 * 126.44432 * 180.25867 * 5 4 3 7 7 N 1.46907 * 109.46873 * 89.71000 * 6 5 4 8 8 C 1.46838 * 111.00351 * 294.21208 * 7 6 5 9 9 C 1.53038 * 109.52681 * 174.16022 * 8 7 6 10 10 C 1.53120 * 109.27467 * 59.17702 * 9 8 7 11 11 C 1.53008 * 109.51833 * 182.44335 * 10 9 8 12 12 C 1.50696 * 109.47176 * 294.68294 * 11 10 9 13 13 H 1.08007 * 119.99741 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00090 * 180.02562 * 12 11 10 15 15 N 1.31515 * 119.99904 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00048 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47166 * 89.99859 * 16 14 12 18 18 H 1.48500 * 109.47168 * 210.00065 * 16 14 12 19 19 H 1.48498 * 109.47223 * 329.99820 * 16 14 12 20 20 C 1.53121 * 109.16158 * 302.34678 * 10 9 8 21 21 C 1.46847 * 110.99683 * 169.99887 * 7 6 5 22 22 O 1.33964 * 125.61941 * 180.02562 * 2 1 3 23 23 H 1.09004 * 109.46932 * 269.97510 * 1 2 3 24 24 H 1.08994 * 109.47103 * 29.97476 * 1 2 3 25 25 H 1.09002 * 109.47223 * 149.98071 * 1 2 3 26 26 H 1.07996 * 126.16700 * 180.02562 * 4 3 2 27 27 H 1.08995 * 109.47419 * 209.71053 * 6 5 4 28 28 H 1.09002 * 109.47246 * 329.71470 * 6 5 4 29 29 H 1.09008 * 109.46174 * 294.17767 * 8 7 6 30 30 H 1.09002 * 109.46377 * 54.14373 * 8 7 6 31 31 H 1.09003 * 109.49974 * 299.24032 * 9 8 7 32 32 H 1.08990 * 109.50506 * 179.12117 * 9 8 7 33 33 H 1.08995 * 109.57754 * 62.28881 * 10 9 8 34 34 H 1.09003 * 109.46999 * 54.68611 * 11 10 9 35 35 H 1.09000 * 109.46657 * 174.68087 * 11 10 9 36 36 H 0.97001 * 119.99949 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.49994 * 297.71222 * 20 10 9 38 38 H 1.09002 * 109.53123 * 177.61682 * 20 10 9 39 39 H 1.09001 * 109.46510 * 305.85653 * 21 7 6 40 40 H 1.09001 * 109.46417 * 65.84038 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0589 0.0000 4 6 3.5522 0.6676 -0.0006 5 6 3.5698 -0.6756 -0.0015 6 6 4.7937 -1.5548 0.0031 7 7 5.1895 -1.8359 1.3896 8 6 5.6300 -0.6113 2.0697 9 6 5.8947 -0.9132 3.5465 10 6 6.9719 -1.9958 3.6559 11 6 7.1975 -2.3456 5.1282 12 6 7.7693 -1.1506 5.8465 13 1 7.9530 -0.2332 5.3069 14 6 8.0579 -1.2283 7.1925 15 7 7.8347 -2.3456 7.8494 16 14 8.7659 0.2532 8.0830 17 1 7.6584 1.0827 8.6219 18 1 9.6289 -0.2068 9.2005 19 1 9.5735 1.0616 7.1345 20 6 6.5092 -3.2436 2.8986 21 6 6.2268 -2.8741 1.4406 22 8 2.2872 -1.0890 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3633 0.8902 -0.5134 25 1 -0.3634 -0.8898 -0.5141 26 1 4.4156 1.3162 -0.0003 27 1 4.5703 -2.4913 -0.5079 28 1 5.6088 -1.0457 -0.5113 29 1 6.5455 -0.2464 1.6039 30 1 4.8532 0.1490 1.9880 31 1 4.9761 -1.2650 4.0162 32 1 6.2365 -0.0077 4.0475 33 1 7.9025 -1.6303 3.2216 34 1 6.2479 -2.6241 5.5851 35 1 7.8943 -3.1807 5.2006 36 1 8.0381 -2.4004 8.7962 37 1 5.6004 -3.6321 3.3582 38 1 7.2898 -4.0035 2.9368 39 1 5.8834 -3.7573 0.9021 40 1 7.1395 -2.4986 0.9780 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260027598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:08 Heat of formation + Delta-G solvation = 7.249981 kcal Electronic energy + Delta-G solvation = -19929.824856 eV Core-core repulsion = 16938.465700 eV Total energy + Delta-G solvation = -2991.359156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.37014 -38.82449 -34.92720 -34.78869 -32.75556 -31.86409 -30.43995 -29.39412 -27.33404 -25.10474 -23.39836 -22.58905 -22.21878 -21.04567 -20.59670 -18.94985 -16.96287 -16.95314 -16.24035 -15.59162 -15.13246 -14.83443 -14.47192 -14.05507 -13.77745 -13.53144 -13.29002 -13.10986 -12.89207 -12.79619 -12.36073 -12.07076 -11.91405 -11.64616 -11.29390 -11.13269 -10.82428 -10.70052 -10.64433 -10.52199 -10.28009 -9.97651 -9.54856 -9.06556 -8.89488 -8.77971 -8.31818 -8.21606 -5.96540 -3.98065 1.35855 2.55032 2.62612 3.33412 3.39818 3.42598 3.94578 4.07058 4.48328 4.66988 4.86574 4.91691 5.14464 5.16600 5.22716 5.31667 5.38046 5.39115 5.42614 5.53283 5.67828 5.75938 5.82455 5.93260 5.96814 6.09611 6.20294 6.25988 6.40264 6.53571 6.63711 6.95147 7.05948 7.17726 7.21265 7.28381 7.66988 7.71079 7.87448 8.04026 8.47027 9.08456 9.65476 11.14816 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.025768 B = 0.004039 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.355082 B = 6931.202672 C = 7460.945528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.182 3.818 3 N -0.485 5.485 4 C -0.038 4.038 5 C -0.026 4.026 6 C 0.136 3.864 7 N -0.535 5.535 8 C 0.050 3.950 9 C -0.098 4.098 10 C -0.082 4.082 11 C 0.028 3.972 12 C -0.515 4.515 13 H 0.055 0.945 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.112 4.112 21 C 0.061 3.939 22 O -0.194 6.194 23 H 0.092 0.908 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.180 0.820 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.259 0.741 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 1.584 -17.981 20.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.025 4.025 3 N -0.215 5.215 4 C -0.178 4.178 5 C -0.079 4.079 6 C 0.008 3.992 7 N -0.260 5.260 8 C -0.077 4.077 9 C -0.136 4.136 10 C -0.101 4.101 11 C -0.009 4.009 12 C -0.553 4.553 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.150 4.150 21 C -0.066 4.066 22 O -0.080 6.080 23 H 0.111 0.889 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.198 0.802 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -10.841 1.879 -17.555 20.718 hybrid contribution 1.459 0.488 0.254 1.559 sum -9.382 2.367 -17.301 19.823 Atomic orbital electron populations 1.20226 0.81494 1.04805 1.04734 1.26256 0.96462 0.78827 1.00933 1.70417 1.02080 1.30377 1.18605 1.23035 0.95067 0.93001 1.06659 1.23285 0.83556 0.95014 1.06094 1.20401 0.89132 0.97971 0.91740 1.61916 1.41284 1.10415 1.12433 1.22335 0.98026 0.90699 0.96674 1.21535 0.99506 1.00273 0.92304 1.21251 0.96445 0.93237 0.99126 1.19114 0.96853 0.96594 0.88322 1.21253 1.41647 0.98487 0.93925 0.92716 1.25015 0.95935 0.95751 0.97772 1.69966 1.48872 1.25695 1.09037 0.86654 0.79091 0.83146 0.79473 1.20714 1.21301 1.19945 1.21700 1.01275 0.98976 0.93032 1.22129 0.91821 0.93658 0.98978 1.84387 1.16630 1.37570 1.69451 0.88907 0.88313 0.89495 0.80247 0.89042 0.91424 0.95059 0.91368 0.91941 0.90756 0.92924 0.96537 0.96723 0.93096 0.91534 0.91845 0.91337 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.18 2.24 8.34 -12.95 -0.11 2.13 16 3 N -0.48 -6.82 11.29 -11.10 -0.13 -6.94 16 4 C -0.04 -0.50 10.27 -17.77 -0.18 -0.69 16 5 C -0.03 -0.34 6.28 -35.69 -0.22 -0.56 16 6 C 0.14 1.58 5.52 -4.97 -0.03 1.55 16 7 N -0.53 -7.72 4.65 -236.11 -1.10 -8.82 16 8 C 0.05 0.77 5.26 -3.84 -0.02 0.75 16 9 C -0.10 -1.88 5.15 -26.65 -0.14 -2.01 16 10 C -0.08 -1.66 2.20 -90.49 -0.20 -1.86 16 11 C 0.03 0.72 4.45 -27.88 -0.12 0.60 16 12 C -0.51 -14.40 8.45 -34.44 -0.29 -14.69 16 13 H 0.05 1.49 7.08 -52.48 -0.37 1.11 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 16 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.11 -1.91 5.38 -26.65 -0.14 -2.05 16 21 C 0.06 0.85 5.46 -3.83 -0.02 0.83 16 22 O -0.19 -2.65 10.78 5.36 0.06 -2.59 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 27 H 0.09 0.94 7.99 -51.93 -0.41 0.53 16 28 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 29 H 0.03 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.07 1.04 5.99 -51.93 -0.31 0.73 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.07 1.51 7.05 -51.93 -0.37 1.14 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.82 8.02 -51.93 -0.42 0.41 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -32.34 323.76 -8.28 -40.62 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -6.51 Total: -3.04 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -1.20 Total: -14.50 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: -0.49 Total: -42.10 kcal Atomic # 8 Polarization: -2.65 SS G_CDS: 0.06 Total: -2.59 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.34 -8.28 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260027598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.866 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds