Wall clock time and date at job start Mon Mar 30 2020 06:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47243 * 2 1 4 4 C 1.52999 * 109.46863 * 240.00452 * 2 1 3 5 5 C 1.50699 * 109.47266 * 120.00591 * 2 1 3 6 6 C 1.35448 * 126.77718 * 60.30012 * 5 2 1 7 7 C 1.41382 * 103.98502 * 180.09421 * 6 5 2 8 8 C 1.50697 * 126.80467 * 179.88346 * 7 6 5 9 9 N 1.46502 * 109.46947 * 94.71479 * 8 7 6 10 10 C 1.36936 * 120.00408 * 90.00400 * 9 8 7 11 11 H 1.08004 * 120.00013 * 217.82251 * 10 9 8 12 12 C 1.38807 * 119.99838 * 37.81234 * 10 9 8 13 13 N 1.31621 * 120.00066 * 20.70026 * 12 10 9 14 14 Si 1.86803 * 120.00080 * 200.69803 * 12 10 9 15 15 H 1.48500 * 109.47175 * 90.00306 * 14 12 10 16 16 H 1.48500 * 109.46815 * 210.00264 * 14 12 10 17 17 H 1.48499 * 109.46791 * 330.00142 * 14 12 10 18 18 C 1.46503 * 119.99775 * 270.27961 * 9 8 7 19 19 C 1.53007 * 117.49711 * 193.96657 * 18 9 8 20 20 C 1.52995 * 117.50183 * 125.30862 * 18 9 8 21 21 N 1.30170 * 106.39499 * 359.62735 * 7 6 5 22 22 O 1.20925 * 111.60917 * 0.23862 * 21 7 6 23 23 H 1.09005 * 109.47206 * 299.99161 * 1 2 3 24 24 H 1.09002 * 109.47878 * 59.99536 * 1 2 3 25 25 H 1.09005 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47048 * 180.02562 * 3 2 1 27 27 H 1.08998 * 109.47500 * 300.00788 * 3 2 1 28 28 H 1.09003 * 109.47045 * 60.00509 * 3 2 1 29 29 H 1.09004 * 109.47665 * 300.00080 * 4 2 1 30 30 H 1.09004 * 109.47404 * 60.00162 * 4 2 1 31 31 H 1.09001 * 109.47288 * 179.97438 * 4 2 1 32 32 H 1.07997 * 128.00872 * 359.96139 * 6 5 2 33 33 H 1.09007 * 109.47071 * 334.71591 * 8 7 6 34 34 H 1.09000 * 109.47483 * 214.71373 * 8 7 6 35 35 H 0.97000 * 120.00239 * 174.94489 * 13 12 10 36 36 H 1.09007 * 115.55077 * 339.63451 * 18 9 8 37 37 H 1.08998 * 117.49737 * 0.02562 * 19 18 9 38 38 H 1.09005 * 117.49418 * 145.01459 * 19 18 9 39 39 H 1.08999 * 117.50377 * 214.98045 * 20 18 9 40 40 H 1.09006 * 117.49985 * 359.97438 * 20 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0398 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7958 -1.9985 1.5763 7 6 2.4843 -2.1552 2.8012 8 6 2.5586 -3.4037 3.6419 9 7 3.7752 -4.1473 3.3055 10 6 4.9393 -3.8980 3.9822 11 1 5.8826 -3.9092 3.4565 12 6 4.9067 -3.6306 5.3439 13 7 3.8691 -4.0027 6.0631 14 14 6.3357 -2.7426 6.1558 15 1 6.0958 -1.2777 6.1148 16 1 6.4553 -3.1853 7.5682 17 1 7.5918 -3.0591 5.4298 18 6 3.7480 -5.1534 2.2409 19 6 4.9321 -6.1181 2.1501 20 6 4.7654 -5.0101 1.1072 21 7 3.0460 -1.0090 3.0562 22 8 2.8064 -0.1943 2.1953 23 1 -0.3634 0.5137 0.8901 24 1 -0.3635 0.5139 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 3.1299 1.4424 -0.0005 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6765 -1.7489 -1.2495 30 1 1.6765 -0.2073 -2.1393 31 1 3.1299 -0.7208 -1.2496 32 1 1.2141 -2.7347 1.0416 33 1 1.6859 -4.0267 3.4451 34 1 2.5797 -3.1307 4.6969 35 1 3.8776 -3.8822 7.0255 36 1 2.7618 -5.5416 1.9860 37 1 5.7311 -6.0044 2.8827 38 1 4.7249 -7.1409 1.8352 39 1 4.4488 -5.3043 0.1066 40 1 5.4548 -4.1670 1.1532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290058212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:10 Heat of formation + Delta-G solvation = 94.616619 kcal Electronic energy + Delta-G solvation = -20689.004157 eV Core-core repulsion = 17701.433502 eV Total energy + Delta-G solvation = -2987.570655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.10838 -37.17536 -37.07998 -34.19761 -32.70371 -30.42622 -29.97801 -27.43335 -27.34892 -26.19373 -23.81801 -22.52867 -21.42466 -21.36321 -19.93372 -18.54409 -16.87969 -16.65974 -16.10474 -15.48450 -14.64213 -14.38927 -14.08609 -14.04113 -13.87035 -13.23566 -12.92700 -12.46304 -12.42901 -12.34458 -11.92849 -11.74600 -11.50974 -11.10592 -11.09044 -10.90188 -10.83097 -10.79468 -10.60238 -10.51599 -10.12802 -9.93276 -9.65565 -9.51862 -9.08734 -8.64628 -8.43737 -6.55488 -5.87191 -3.42498 2.18011 3.12829 3.38644 3.45182 3.48193 3.65653 4.44909 4.64814 4.87797 4.93265 4.94525 5.16355 5.26415 5.32324 5.41523 5.51764 5.55004 5.69978 5.74237 5.79106 5.80066 5.88119 5.95044 5.98977 6.07366 6.10163 6.22096 6.22283 6.27820 6.39257 6.47158 6.58287 6.73395 6.91608 6.98364 7.17470 7.47106 7.80390 8.46263 9.09846 9.22083 9.73175 10.27840 11.15919 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020104 B = 0.006516 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.408511 B = 4296.145186 C = 5002.173320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.019 3.981 3 C -0.144 4.144 4 C -0.138 4.138 5 C -0.050 4.050 6 C -0.224 4.224 7 C 0.027 3.973 8 C 0.211 3.789 9 N -0.537 5.537 10 C -0.260 4.260 11 H 0.061 0.939 12 C 0.023 3.977 13 N -0.887 5.887 14 Si 0.901 3.099 15 H -0.282 1.282 16 H -0.290 1.290 17 H -0.277 1.277 18 C 0.128 3.872 19 C -0.193 4.193 20 C -0.227 4.227 21 N -0.355 5.355 22 O 0.086 5.914 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.156 0.844 33 H 0.051 0.949 34 H 0.114 0.886 35 H 0.259 0.741 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 5.559 -12.802 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.018 3.982 3 C -0.202 4.202 4 C -0.195 4.195 5 C -0.114 4.114 6 C -0.246 4.246 7 C -0.134 4.134 8 C 0.084 3.916 9 N -0.253 5.253 10 C -0.389 4.389 11 H 0.078 0.922 12 C -0.178 4.178 13 N -0.529 5.529 14 Si 0.730 3.270 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.203 1.203 18 C 0.019 3.981 19 C -0.232 4.232 20 C -0.268 4.268 21 N -0.061 5.061 22 O 0.022 5.978 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.174 0.826 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.388 6.094 -11.564 14.549 hybrid contribution 0.414 -0.116 -0.170 0.463 sum -5.974 5.978 -11.735 14.461 Atomic orbital electron populations 1.21895 0.92839 1.02561 1.02201 1.18995 0.95518 0.94945 0.88753 1.21865 1.01883 0.94217 1.02191 1.21898 1.01754 1.00447 0.95430 1.24182 0.98372 0.94351 0.94518 1.22296 1.07171 0.96390 0.98741 1.25231 0.95080 0.96688 0.96439 1.19485 0.88149 0.84470 0.99519 1.43251 1.08106 1.36781 1.37206 1.18864 0.86162 1.44417 0.89503 0.92178 1.25162 0.97276 0.99033 0.96303 1.69852 1.30571 1.46930 1.05536 0.86329 0.81996 0.80432 0.78258 1.20802 1.21590 1.20261 1.21115 0.91967 0.93321 0.91717 1.23077 1.04242 0.93406 1.02467 1.23342 1.07822 1.01465 0.94135 1.73889 1.20268 1.01761 1.10184 1.84832 1.51775 1.36377 1.24788 0.92181 0.91738 0.92044 0.91931 0.92021 0.91968 0.92016 0.91784 0.92119 0.82628 0.93112 0.86885 0.93138 0.89326 0.88254 0.90706 0.90968 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.36 37.15 0.31 -1.04 16 2 C 0.02 0.23 0.94 -155.67 -0.15 0.08 16 3 C -0.14 -1.54 8.08 37.16 0.30 -1.24 16 4 C -0.14 -1.45 8.36 37.16 0.31 -1.13 16 5 C -0.05 -0.82 5.77 -35.30 -0.20 -1.03 16 6 C -0.22 -3.98 10.55 -39.38 -0.42 -4.40 16 7 C 0.03 0.61 6.91 -82.10 -0.57 0.04 16 8 C 0.21 5.06 5.92 -5.19 -0.03 5.03 16 9 N -0.54 -13.48 2.77 -167.02 -0.46 -13.94 16 10 C -0.26 -7.19 8.05 -15.06 -0.12 -7.31 16 11 H 0.06 1.71 7.20 -52.48 -0.38 1.33 16 12 C 0.02 0.65 4.97 -17.43 -0.09 0.57 16 13 N -0.89 -25.55 11.44 55.49 0.63 -24.92 16 14 Si 0.90 22.54 29.61 -169.99 -5.03 17.51 16 15 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 C 0.13 2.76 6.61 -67.93 -0.45 2.31 16 19 C -0.19 -3.92 9.81 -26.69 -0.26 -4.18 16 20 C -0.23 -4.48 10.08 -26.70 -0.27 -4.75 16 21 N -0.36 -8.31 12.07 33.42 0.40 -7.90 16 22 O 0.09 1.72 10.68 17.16 0.18 1.91 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.65 8.03 -51.93 -0.42 0.23 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 34 H 0.11 3.09 5.51 -51.93 -0.29 2.81 16 35 H 0.26 7.20 8.32 -40.82 -0.34 6.86 16 36 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 37 H 0.10 2.24 6.95 -51.93 -0.36 1.88 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.79 7.99 -51.93 -0.41 1.38 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -30.45 331.82 -7.38 -37.83 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.48 Total: 1.57 kcal Atomic # 6 Polarization: -15.42 SS G_CDS: -1.63 Total: -17.05 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.58 Total: -46.76 kcal Atomic # 8 Polarization: 1.72 SS G_CDS: 0.18 Total: 1.91 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.45 -7.38 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290058212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.446 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds