Wall clock time and date at job start Mon Mar 30 2020 06:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00117 * 2 1 4 4 H 1.48508 * 109.46765 * 270.00180 * 3 2 1 5 5 H 1.48495 * 109.46988 * 29.99644 * 3 2 1 6 6 H 1.48500 * 109.47300 * 150.00331 * 3 2 1 7 7 C 1.37878 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99864 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00337 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.47610 * 179.97438 * 9 7 2 11 11 C 1.42892 * 114.00080 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47132 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47122 * 65.00326 * 12 11 10 14 14 C 1.47846 * 110.99944 * 284.98320 * 13 12 11 15 15 C 1.54906 * 104.79793 * 213.63399 * 14 13 12 16 16 C 1.55151 * 101.65291 * 37.07118 * 15 14 13 17 17 C 1.47442 * 111.00022 * 164.14118 * 13 12 11 18 18 H 1.09003 * 109.88865 * 242.82179 * 17 13 12 19 19 C 1.50694 * 109.89195 * 3.85033 * 17 13 12 20 20 C 1.34851 * 125.89193 * 240.76510 * 19 17 13 21 21 C 1.40891 * 107.41794 * 179.97438 * 20 19 17 22 22 C 1.34853 * 107.41760 * 0.02562 * 21 20 19 23 23 N 1.36340 * 125.88866 * 60.45133 * 19 17 13 24 24 H 0.97003 * 125.63690 * 0.02562 * 23 19 17 25 25 H 0.96999 * 120.00422 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47380 * 300.00616 * 9 7 2 27 27 H 1.09006 * 109.46698 * 60.00265 * 9 7 2 28 28 H 1.08996 * 109.47801 * 300.00625 * 11 10 9 29 29 H 1.08996 * 109.47077 * 60.00795 * 11 10 9 30 30 H 1.08998 * 109.47495 * 185.00504 * 12 11 10 31 31 H 1.09000 * 109.47072 * 305.00298 * 12 11 10 32 32 H 1.08996 * 110.37374 * 332.46192 * 14 13 12 33 33 H 1.09001 * 110.37534 * 94.80597 * 14 13 12 34 34 H 1.08998 * 110.99295 * 278.98175 * 15 14 13 35 35 H 1.09000 * 111.02535 * 155.17226 * 15 14 13 36 36 H 1.08991 * 110.70411 * 205.96564 * 16 15 14 37 37 H 1.08994 * 110.85315 * 82.79420 * 16 15 14 38 38 H 1.07996 * 126.29004 * 359.97329 * 20 19 17 39 39 H 1.07997 * 126.29342 * 180.02562 * 21 20 19 40 40 H 1.08002 * 125.89244 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 8 2.1796 -3.5853 0.0015 11 6 1.5651 -4.8754 0.0031 12 6 2.6480 -5.9562 0.0033 13 7 3.4089 -5.8867 1.2580 14 6 4.3341 -4.7335 1.2534 15 6 5.5661 -5.2113 2.0617 16 6 5.6701 -6.6967 1.6257 17 6 4.1935 -7.1171 1.4690 18 1 3.8522 -7.6243 2.3714 19 6 4.0440 -8.0307 0.2800 20 6 3.5311 -9.2778 0.3007 21 6 3.5756 -9.7740 -1.0171 22 6 4.1144 -8.8116 -1.7929 23 7 4.3984 -7.7369 -1.0033 24 1 4.7905 -6.9023 -1.3044 25 1 -0.4851 0.8400 -0.0004 26 1 0.6247 -2.5563 0.8919 27 1 0.6241 -2.5575 -0.8881 28 1 0.9458 -4.9818 0.8937 29 1 0.9441 -4.9831 -0.8861 30 1 2.1820 -6.9376 -0.0851 31 1 3.3210 -5.7964 -0.8391 32 1 4.6237 -4.4834 0.2328 33 1 3.8717 -3.8741 1.7390 34 1 5.3850 -5.1309 3.1335 35 1 6.4602 -4.6571 1.7761 36 1 6.1604 -7.2911 2.3965 37 1 6.1990 -6.7864 0.6769 38 1 3.1554 -9.8000 1.1681 39 1 3.2398 -10.7465 -1.3457 40 1 4.2863 -8.8784 -2.8571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292799703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:08 Heat of formation + Delta-G solvation = -11.674093 kcal Electronic energy + Delta-G solvation = -20372.933635 eV Core-core repulsion = 17380.753869 eV Total energy + Delta-G solvation = -2992.179766 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.46518 -39.73363 -38.29086 -35.02039 -33.57644 -31.83312 -31.62754 -29.91644 -28.41044 -27.75636 -24.58038 -23.63174 -22.38793 -21.93880 -21.19119 -20.92945 -18.68999 -18.23743 -17.42123 -17.27645 -16.50007 -16.37124 -15.85364 -15.52355 -15.04587 -14.67990 -14.45468 -14.19556 -14.00155 -13.94179 -13.65133 -13.26749 -13.05128 -12.96538 -12.95083 -12.56271 -12.35480 -12.23340 -12.06281 -11.93393 -11.72956 -11.63631 -11.26260 -10.87537 -10.22702 -9.76678 -9.43188 -8.80623 -8.32569 -6.45126 1.34312 1.38849 1.41735 1.53738 2.12664 2.33423 2.44164 3.01428 3.04239 3.19616 3.63824 3.74722 3.83783 4.20022 4.22574 4.24257 4.43370 4.47901 4.51098 4.57982 4.65183 4.67508 4.77765 4.78950 4.88656 4.91619 5.00012 5.06912 5.16573 5.27211 5.28811 5.39261 5.47460 5.53716 5.95099 6.02063 6.05276 6.15630 6.27709 6.52247 6.70605 6.80533 7.26820 8.80025 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.004412 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.634505 B = 6344.614198 C = 6837.912223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.211 3.789 10 O -0.395 6.395 11 C 0.058 3.942 12 C 0.077 3.923 13 N -0.530 5.530 14 C 0.056 3.944 15 C -0.125 4.125 16 C -0.124 4.124 17 C 0.136 3.864 18 H 0.110 0.890 19 C -0.001 4.001 20 C -0.203 4.203 21 C -0.218 4.218 22 C -0.012 4.012 23 N -0.556 5.556 24 H 0.414 0.586 25 H 0.270 0.730 26 H -0.020 1.020 27 H -0.019 1.019 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.140 0.860 39 H 0.146 0.854 40 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.528 -17.350 0.044 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.136 3.864 10 O -0.315 6.315 11 C -0.020 4.020 12 C -0.051 4.051 13 N -0.254 5.254 14 C -0.072 4.072 15 C -0.163 4.163 16 C -0.162 4.162 17 C 0.028 3.972 18 H 0.128 0.872 19 C -0.114 4.114 20 C -0.229 4.229 21 C -0.243 4.243 22 C -0.144 4.144 23 N -0.153 5.153 24 H 0.252 0.748 25 H 0.079 0.921 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.158 0.842 39 H 0.164 0.836 40 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 11.261 -17.020 0.402 20.412 hybrid contribution 0.044 1.099 -0.931 1.441 sum 11.305 -15.921 -0.529 19.533 Atomic orbital electron populations 1.70079 1.07874 1.28611 1.50592 1.25971 0.95906 1.03423 0.93951 0.85187 0.78425 0.77029 0.78798 1.19320 1.20057 1.18680 1.21336 0.94016 0.90599 1.52062 0.91872 1.19768 0.88692 0.84950 0.93002 1.87821 1.34762 1.13799 1.95095 1.22568 0.95964 0.84405 0.99063 1.22316 0.95185 0.97093 0.90525 1.63714 1.25173 1.02532 1.33961 1.22919 0.92092 0.93370 0.98782 1.22758 0.97169 0.95683 1.00718 1.22799 0.94848 0.96195 1.02389 1.21260 0.93435 0.88090 0.94369 0.87240 1.20608 1.07444 0.97337 0.86040 1.20937 1.08070 0.95276 0.98612 1.21143 1.08681 1.01009 0.93461 1.22308 1.06350 0.87684 0.98029 1.42321 1.50344 1.15412 1.07209 0.74791 0.92097 1.00215 1.00159 0.94392 0.94063 0.88587 0.94459 0.94778 0.92440 0.90160 0.89700 0.88472 0.91629 0.84238 0.83592 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.01 0.34 5.46 84.66 0.46 0.80 16 3 Si 0.98 44.42 29.54 68.60 2.03 46.45 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 7 C -0.54 -32.40 9.43 25.60 0.24 -32.16 16 8 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 9 C 0.21 12.11 5.69 71.23 0.41 12.52 16 10 O -0.40 -19.37 8.17 -148.98 -1.22 -20.59 16 11 C 0.06 2.29 6.26 71.98 0.45 2.75 16 12 C 0.08 2.43 4.10 86.30 0.35 2.79 16 13 N -0.53 -16.00 5.12 -864.90 -4.43 -20.43 16 14 C 0.06 1.78 5.21 86.77 0.45 2.23 16 15 C -0.13 -2.86 7.08 31.98 0.23 -2.64 16 16 C -0.12 -2.41 6.46 31.78 0.21 -2.20 16 17 C 0.14 3.17 3.89 44.51 0.17 3.34 16 18 H 0.11 2.42 8.11 -2.39 -0.02 2.40 16 19 C 0.00 -0.02 3.47 41.08 0.14 0.12 16 20 C -0.20 -4.53 10.72 22.14 0.24 -4.29 16 21 C -0.22 -4.44 10.86 22.14 0.24 -4.20 16 22 C -0.01 -0.23 11.94 83.21 0.99 0.76 16 23 N -0.56 -11.44 4.47 -182.77 -0.82 -12.25 16 24 H 0.41 8.03 7.84 -92.71 -0.73 7.30 16 25 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 26 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 27 H -0.02 -1.16 8.14 -2.38 -0.02 -1.18 16 28 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.10 2.86 6.56 -2.39 -0.02 2.85 16 31 H 0.04 1.15 5.68 -2.39 -0.01 1.13 16 32 H 0.03 1.15 7.46 -2.39 -0.02 1.13 16 33 H 0.06 2.27 7.60 -2.39 -0.02 2.26 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.24 7.67 -2.39 -0.02 1.22 16 38 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 39 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 40 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -67.43 320.66 0.72 -66.71 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.29 Total: 16.79 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: 4.58 Total: -20.19 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -4.96 Total: -89.17 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -1.22 Total: -20.59 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -67.43 0.72 -66.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292799703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.034 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds