Wall clock time and date at job start Mon Mar 30 2020 07:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46874 * 2 1 4 4 C 1.50697 * 109.47277 * 239.99888 * 2 1 3 5 5 C 1.38647 * 120.79454 * 279.71893 * 4 2 1 6 6 C 1.38202 * 119.16626 * 179.75435 * 5 4 2 7 7 N 1.31875 * 120.76308 * 0.53421 * 6 5 4 8 8 C 1.31869 * 121.72333 * 359.73988 * 7 6 5 9 9 C 1.38209 * 120.76814 * 359.97438 * 8 7 6 10 10 N 1.46898 * 109.47302 * 119.99816 * 2 1 3 11 11 C 1.46895 * 111.00284 * 176.04884 * 10 2 1 12 12 C 1.46899 * 111.00099 * 300.00384 * 10 2 1 13 13 C 1.53004 * 109.47257 * 163.22035 * 12 10 2 14 14 O 1.42902 * 109.46796 * 68.30980 * 13 12 10 15 15 C 1.42895 * 113.99578 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46963 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00053 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00326 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00681 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99777 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47053 * 90.00172 * 20 18 16 22 22 H 1.48499 * 109.46927 * 209.99988 * 20 18 16 23 23 H 1.48495 * 109.47040 * 330.00058 * 20 18 16 24 24 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47173 * 299.99574 * 1 2 3 26 26 H 1.09003 * 109.46784 * 60.00411 * 1 2 3 27 27 H 1.08002 * 120.41490 * 0.02562 * 5 4 2 28 28 H 1.07998 * 119.62006 * 180.28827 * 6 5 4 29 29 H 1.07996 * 119.61576 * 180.02562 * 8 7 6 30 30 H 1.07988 * 120.41929 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47594 * 69.85424 * 11 10 2 32 32 H 1.09005 * 109.47252 * 189.85723 * 11 10 2 33 33 H 1.09001 * 109.46972 * 309.85035 * 11 10 2 34 34 H 1.09001 * 109.47112 * 283.22299 * 12 10 2 35 35 H 1.08996 * 109.47211 * 43.22010 * 12 10 2 36 36 H 1.08999 * 109.46715 * 188.30632 * 13 12 10 37 37 H 1.09001 * 109.47223 * 308.31201 * 13 12 10 38 38 H 1.09002 * 109.47381 * 299.99933 * 15 14 13 39 39 H 1.08998 * 109.47665 * 60.00213 * 15 14 13 40 40 H 0.96991 * 120.00402 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.0794 -2.0952 -1.2810 6 6 2.5414 -2.7119 -2.4283 7 7 2.9440 -1.9988 -3.4620 8 6 2.9185 -0.6805 -3.4471 9 6 2.4639 0.0054 -2.3367 10 7 2.0197 -0.6924 1.1994 11 6 3.4850 -0.7944 1.1871 12 6 1.5486 -0.0264 2.4211 13 6 1.7083 -0.9733 3.6122 14 8 3.0978 -1.1698 3.8816 15 6 3.3586 -2.0427 4.9824 16 6 4.8472 -2.1766 5.1757 17 1 5.5262 -1.6482 4.5228 18 6 5.3424 -2.9743 6.1853 19 7 6.6414 -3.0916 6.3536 20 14 4.1680 -3.8888 7.3141 21 1 3.8711 -5.2262 6.7410 22 1 4.7927 -4.0511 8.6516 23 1 2.9069 -3.1162 7.4472 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.7550 -2.6845 -0.4362 28 1 2.5768 -3.7902 -2.4774 29 1 3.2561 -0.1303 -4.3130 30 1 2.4451 1.0851 -2.3308 31 1 3.9194 0.1942 1.3354 32 1 3.8099 -1.4579 1.9886 33 1 3.8133 -1.1954 0.2281 34 1 2.1361 0.8756 2.5927 35 1 0.4980 0.2405 2.3073 36 1 1.2261 -0.5395 4.4883 37 1 1.2442 -1.9317 3.3792 38 1 2.9108 -1.6308 5.8868 39 1 2.9288 -3.0234 4.7784 40 1 6.9897 -3.6531 7.0636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293715965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:26 Heat of formation + Delta-G solvation = -2.170199 kcal Electronic energy + Delta-G solvation = -19904.914660 eV Core-core repulsion = 16913.147014 eV Total energy + Delta-G solvation = -2991.767646 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.43694 -38.23682 -36.53370 -33.27609 -32.52947 -31.24399 -30.30666 -29.51551 -27.57716 -24.76768 -24.25452 -23.50096 -21.84567 -21.62404 -20.12659 -17.00631 -16.78320 -16.66090 -15.85349 -15.65391 -15.53177 -14.80479 -14.60519 -14.29979 -14.05741 -13.68412 -13.57315 -13.36860 -12.71679 -12.47147 -12.36139 -12.17537 -11.79974 -11.64576 -11.42537 -11.37799 -11.21632 -10.83517 -10.69613 -10.43421 -9.87651 -9.57887 -9.48629 -9.19438 -9.16074 -8.83518 -8.47088 -8.19869 -6.13079 -4.12275 1.09210 1.19588 3.23865 3.30973 3.32099 3.73618 3.93673 4.34261 4.39297 4.43181 4.66884 4.78624 5.00075 5.08517 5.11241 5.18359 5.18753 5.23759 5.44628 5.56701 5.59947 5.65187 5.77823 5.84180 5.88302 5.91870 5.92840 5.98794 6.12984 6.21159 6.31044 6.59171 6.66017 6.77211 6.99366 7.18985 7.24499 7.58998 7.91956 8.00070 8.64704 8.97512 9.46403 10.99925 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.004152 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.328848 B = 6742.626742 C = 7303.551934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.113 3.887 3 H 0.049 0.951 4 C -0.028 4.028 5 C -0.142 4.142 6 C 0.092 3.908 7 N -0.490 5.490 8 C 0.093 3.907 9 C -0.173 4.173 10 N -0.528 5.528 11 C 0.020 3.980 12 C 0.055 3.945 13 C 0.063 3.937 14 O -0.378 6.378 15 C 0.169 3.831 16 C -0.519 4.519 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.145 0.855 28 H 0.154 0.846 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.022 0.978 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.043 0.957 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.048 0.952 38 H 0.001 0.999 39 H -0.001 1.001 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 6.093 -15.033 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.005 3.995 3 H 0.067 0.933 4 C -0.037 4.037 5 C -0.162 4.162 6 C -0.064 4.064 7 N -0.200 5.200 8 C -0.064 4.064 9 C -0.194 4.194 10 N -0.253 5.253 11 C -0.127 4.127 12 C -0.072 4.072 13 C -0.015 4.015 14 O -0.297 6.297 15 C 0.093 3.907 16 C -0.556 4.556 17 H 0.099 0.901 18 C -0.129 4.129 19 N -0.534 5.534 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.191 1.191 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.169 0.831 30 H 0.148 0.852 31 H 0.040 0.960 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.019 0.981 39 H 0.016 0.984 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.148 5.184 -15.757 21.166 hybrid contribution -0.607 0.644 1.636 1.860 sum -13.755 5.828 -14.120 20.556 Atomic orbital electron populations 1.21900 0.93232 1.03066 1.01778 1.20594 0.95746 0.95008 0.88166 0.93276 1.20189 0.94746 0.94207 0.94558 1.22125 0.99697 0.94887 0.99474 1.22810 0.94463 1.00359 0.88784 1.67648 1.14944 1.08023 1.29362 1.22654 0.96055 0.90301 0.97393 1.22009 1.01559 1.01159 0.94628 1.62103 1.12182 1.50683 1.00360 1.22674 0.85326 1.01471 1.03273 1.22272 1.00083 0.95785 0.89107 1.22334 0.85943 0.98209 0.95021 1.87903 1.20752 1.68596 1.52467 1.20577 0.97806 0.88020 0.84258 1.20880 0.89371 1.29130 1.16265 0.90070 1.24764 0.95087 0.96121 0.96940 1.69870 1.11546 1.39349 1.32642 0.86854 0.81542 0.80739 0.80625 1.19908 1.20840 1.19137 0.91394 0.91691 0.92263 0.83767 0.82829 0.83079 0.85220 0.95967 0.87465 0.92692 0.93883 0.89778 0.94051 0.93377 0.98138 0.98351 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.00 37.16 0.33 -0.97 16 2 C 0.11 1.27 2.31 -68.87 -0.16 1.11 16 3 H 0.05 0.54 8.04 -51.93 -0.42 0.13 16 4 C -0.03 -0.33 3.64 -104.32 -0.38 -0.71 16 5 C -0.14 -1.68 8.30 -39.44 -0.33 -2.01 16 6 C 0.09 1.08 11.18 -17.55 -0.20 0.89 16 7 N -0.49 -6.20 10.36 -13.25 -0.14 -6.34 16 8 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 9 C -0.17 -1.79 9.78 -39.44 -0.39 -2.18 16 10 N -0.53 -7.30 3.99 -236.29 -0.94 -8.24 16 11 C 0.02 0.32 8.70 60.06 0.52 0.84 16 12 C 0.06 0.76 5.38 -3.82 -0.02 0.74 16 13 C 0.06 1.06 6.21 37.16 0.23 1.29 16 14 O -0.38 -8.35 7.52 -35.23 -0.26 -8.61 16 15 C 0.17 4.19 4.76 36.01 0.17 4.36 16 16 C -0.52 -15.17 9.99 -34.44 -0.34 -15.51 16 17 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 20 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.55 6.08 -51.93 -0.32 0.23 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.14 1.73 7.79 -52.49 -0.41 1.32 16 28 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 29 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.02 0.36 7.99 -51.93 -0.41 -0.05 16 32 H 0.11 2.13 5.82 -51.93 -0.30 1.82 16 33 H 0.05 0.85 5.92 -51.93 -0.31 0.54 16 34 H 0.04 0.62 7.93 -51.93 -0.41 0.21 16 35 H 0.08 0.91 5.60 -51.93 -0.29 0.62 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.00 0.02 7.20 -51.93 -0.37 -0.35 16 39 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 323.01 15.07 4.87 4.87 Total: -1.00 -31.82 323.01 -7.41 -39.22 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.19 Total: -1.46 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.85 Total: -9.33 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: -0.31 Total: -41.30 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.26 Total: -8.61 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.82 -7.41 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293715965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.052 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds