Wall clock time and date at job start Mon Mar 30 2020 07:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46874 * 2 1 4 4 C 1.50697 * 109.47277 * 239.99888 * 2 1 3 5 5 C 1.38647 * 120.79454 * 279.71893 * 4 2 1 6 6 C 1.38202 * 119.16626 * 179.75435 * 5 4 2 7 7 N 1.31875 * 120.76308 * 0.53421 * 6 5 4 8 8 C 1.31869 * 121.72333 * 359.73988 * 7 6 5 9 9 C 1.38209 * 120.76814 * 359.97438 * 8 7 6 10 10 N 1.46898 * 109.47302 * 119.99816 * 2 1 3 11 11 C 1.46895 * 111.00284 * 176.04884 * 10 2 1 12 12 C 1.46899 * 111.00099 * 300.00384 * 10 2 1 13 13 C 1.53004 * 109.47257 * 163.22035 * 12 10 2 14 14 O 1.42902 * 109.46796 * 68.30980 * 13 12 10 15 15 C 1.42895 * 113.99578 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46963 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00053 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00326 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00681 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99777 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47053 * 90.00172 * 20 18 16 22 22 H 1.48499 * 109.46927 * 209.99988 * 20 18 16 23 23 H 1.48495 * 109.47040 * 330.00058 * 20 18 16 24 24 H 1.08999 * 109.46874 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47173 * 299.99574 * 1 2 3 26 26 H 1.09003 * 109.46784 * 60.00411 * 1 2 3 27 27 H 1.08002 * 120.41490 * 0.02562 * 5 4 2 28 28 H 1.07998 * 119.62006 * 180.28827 * 6 5 4 29 29 H 1.07996 * 119.61576 * 180.02562 * 8 7 6 30 30 H 1.07988 * 120.41929 * 180.02562 * 9 8 7 31 31 H 1.09002 * 109.47594 * 69.85424 * 11 10 2 32 32 H 1.09005 * 109.47252 * 189.85723 * 11 10 2 33 33 H 1.09001 * 109.46972 * 309.85035 * 11 10 2 34 34 H 1.09001 * 109.47112 * 283.22299 * 12 10 2 35 35 H 1.08996 * 109.47211 * 43.22010 * 12 10 2 36 36 H 1.08999 * 109.46715 * 188.30632 * 13 12 10 37 37 H 1.09001 * 109.47223 * 308.31201 * 13 12 10 38 38 H 1.09002 * 109.47381 * 299.99933 * 15 14 13 39 39 H 1.08998 * 109.47665 * 60.00213 * 15 14 13 40 40 H 0.96991 * 120.00402 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.0794 -2.0952 -1.2810 6 6 2.5414 -2.7119 -2.4283 7 7 2.9440 -1.9988 -3.4620 8 6 2.9185 -0.6805 -3.4471 9 6 2.4639 0.0054 -2.3367 10 7 2.0197 -0.6924 1.1994 11 6 3.4850 -0.7944 1.1871 12 6 1.5486 -0.0264 2.4211 13 6 1.7083 -0.9733 3.6122 14 8 3.0978 -1.1698 3.8816 15 6 3.3586 -2.0427 4.9824 16 6 4.8472 -2.1766 5.1757 17 1 5.5262 -1.6482 4.5228 18 6 5.3424 -2.9743 6.1853 19 7 6.6414 -3.0916 6.3536 20 14 4.1680 -3.8888 7.3141 21 1 3.8711 -5.2262 6.7410 22 1 4.7927 -4.0511 8.6516 23 1 2.9069 -3.1162 7.4472 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 1.7550 -2.6845 -0.4362 28 1 2.5768 -3.7902 -2.4774 29 1 3.2561 -0.1303 -4.3130 30 1 2.4451 1.0851 -2.3308 31 1 3.9194 0.1942 1.3354 32 1 3.8099 -1.4579 1.9886 33 1 3.8133 -1.1954 0.2281 34 1 2.1361 0.8756 2.5927 35 1 0.4980 0.2405 2.3073 36 1 1.2261 -0.5395 4.4883 37 1 1.2442 -1.9317 3.3792 38 1 2.9108 -1.6308 5.8868 39 1 2.9288 -3.0234 4.7784 40 1 6.9897 -3.6531 7.0636 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293715965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:25 Heat of formation + Delta-G solvation = -23.660539 kcal Electronic energy + Delta-G solvation = -19905.846551 eV Core-core repulsion = 16913.147014 eV Total energy + Delta-G solvation = -2992.699537 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.32007 -39.43909 -38.00956 -34.93872 -34.08896 -32.09330 -31.22043 -30.98667 -29.41024 -25.91546 -25.26106 -24.36468 -23.91094 -22.72962 -21.12267 -19.04655 -17.83656 -17.71738 -17.28915 -16.92921 -16.47819 -16.40051 -15.88893 -15.47651 -15.34829 -14.88805 -14.67317 -14.40993 -14.30043 -13.98446 -13.67749 -13.20674 -13.13493 -12.89087 -12.67338 -12.64905 -12.49782 -12.29421 -11.98089 -11.90989 -11.80768 -11.27893 -10.90689 -10.46796 -10.36165 -10.24909 -10.02027 -9.32778 -8.36763 -6.44196 0.24817 0.32088 1.33520 1.36202 1.46940 2.29557 2.79239 2.96392 2.96609 3.14002 3.54723 3.64612 3.94730 4.08544 4.15399 4.28257 4.28982 4.37178 4.37563 4.49571 4.56199 4.59026 4.67128 4.72507 4.75293 4.83876 4.90236 4.95957 5.00511 5.05060 5.13414 5.30073 5.32946 5.42757 5.49242 5.82497 5.94790 6.02343 6.17325 6.60079 6.78219 7.06380 7.20677 8.80357 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.004152 C = 0.003833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.328848 B = 6742.626742 C = 7303.551934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.115 3.885 3 H 0.056 0.944 4 C -0.038 4.038 5 C -0.152 4.152 6 C 0.081 3.919 7 N -0.515 5.515 8 C 0.087 3.913 9 C -0.171 4.171 10 N -0.532 5.532 11 C 0.035 3.965 12 C 0.060 3.940 13 C 0.053 3.947 14 O -0.398 6.398 15 C 0.180 3.820 16 C -0.541 4.541 17 H 0.029 0.971 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.954 3.046 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.245 1.245 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.167 0.833 29 H 0.178 0.822 30 H 0.155 0.845 31 H 0.013 0.987 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.123 0.877 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.010 0.990 39 H 0.008 0.992 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.360 6.566 -15.081 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 H 0.074 0.926 4 C -0.047 4.047 5 C -0.172 4.172 6 C -0.075 4.075 7 N -0.225 5.225 8 C -0.070 4.070 9 C -0.191 4.191 10 N -0.257 5.257 11 C -0.113 4.113 12 C -0.067 4.067 13 C -0.024 4.024 14 O -0.318 6.318 15 C 0.104 3.896 16 C -0.579 4.579 17 H 0.048 0.952 18 C -0.185 4.185 19 N -0.583 5.583 20 Si 0.776 3.224 21 H -0.186 1.186 22 H -0.200 1.200 23 H -0.168 1.168 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.156 0.844 28 H 0.184 0.816 29 H 0.195 0.805 30 H 0.173 0.827 31 H 0.032 0.968 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.025 0.975 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.968 5.674 -15.828 23.188 hybrid contribution 0.318 0.579 1.526 1.663 sum -15.650 6.253 -14.302 22.103 Atomic orbital electron populations 1.21881 0.91224 1.03155 1.03165 1.20687 0.97200 0.94818 0.86609 0.92564 1.20345 0.95023 0.94149 0.95152 1.22118 1.00387 0.95338 0.99381 1.23051 0.94482 1.01176 0.88743 1.67680 1.15783 1.09141 1.29854 1.23147 0.95444 0.89940 0.98468 1.22273 1.00532 1.02412 0.93925 1.62049 1.10240 1.51708 1.01658 1.22372 0.87327 0.99892 1.01744 1.22313 1.02147 0.94393 0.87856 1.22695 0.83162 0.99454 0.97079 1.87904 1.24469 1.67993 1.51441 1.20258 0.94643 0.89084 0.85584 1.21159 0.91517 1.29224 1.15987 0.95227 1.25823 0.97126 0.96868 0.98663 1.70031 1.14106 1.40437 1.33769 0.85625 0.79424 0.79485 0.77901 1.18563 1.19998 1.16807 0.91943 0.90497 0.90656 0.84422 0.81602 0.80529 0.82744 0.96837 0.91468 0.92395 0.94679 0.85955 0.92333 0.92895 0.97238 0.97469 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.00 71.98 0.65 -1.43 16 2 C 0.11 2.32 2.31 44.17 0.10 2.43 16 3 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 4 C -0.04 -0.82 3.64 -19.67 -0.07 -0.89 16 5 C -0.15 -3.55 8.30 22.36 0.19 -3.36 16 6 C 0.08 1.89 11.18 84.68 0.95 2.84 16 7 N -0.51 -12.63 10.36 -195.84 -2.03 -14.65 16 8 C 0.09 1.72 11.18 84.68 0.95 2.67 16 9 C -0.17 -3.19 9.78 22.36 0.22 -2.97 16 10 N -0.53 -14.09 3.99 -901.48 -3.60 -17.69 16 11 C 0.03 1.15 8.70 127.69 1.11 2.27 16 12 C 0.06 1.53 5.38 86.30 0.46 2.00 16 13 C 0.05 1.70 6.21 71.98 0.45 2.14 16 14 O -0.40 -17.76 7.52 -148.98 -1.12 -18.88 16 15 C 0.18 8.91 4.76 71.24 0.34 9.25 16 16 C -0.54 -32.76 9.99 25.60 0.26 -32.50 16 17 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 18 C 0.01 0.77 5.47 84.65 0.46 1.23 16 19 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 20 Si 0.95 43.36 27.47 68.60 1.88 45.25 16 21 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.24 -10.19 6.54 99.48 0.65 -9.54 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.08 0.98 6.08 -2.39 -0.01 0.96 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.14 3.32 7.79 -2.91 -0.02 3.30 16 28 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 29 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 30 H 0.15 2.04 8.06 -2.92 -0.02 2.01 16 31 H 0.01 0.45 7.99 -2.39 -0.02 0.43 16 32 H 0.07 2.80 5.82 -2.38 -0.01 2.79 16 33 H 0.06 1.84 5.92 -2.39 -0.01 1.82 16 34 H 0.03 0.96 7.93 -2.39 -0.02 0.94 16 35 H 0.12 2.20 5.60 -2.39 -0.01 2.18 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 39 H 0.01 0.36 7.57 -2.39 -0.02 0.34 16 40 H 0.27 15.78 8.31 -92.72 -0.77 15.01 16 Total: -1.00 -71.43 323.01 2.44 -68.99 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.95 Total: 12.62 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: 6.06 Total: -16.34 kcal Atomic # 7 Polarization: -86.30 SS G_CDS: -5.33 Total: -91.63 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.12 Total: -18.88 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.25 kcal Total: -71.43 2.44 -68.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293715965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.326 kcal (2) G-P(sol) polarization free energy of solvation -71.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds