Wall clock time and date at job start Mon Mar 30 2020 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47604 * 2 1 4 4 C 1.50701 * 109.47452 * 120.00583 * 2 1 3 5 5 C 1.38657 * 120.78551 * 79.71644 * 4 2 1 6 6 C 1.38203 * 119.15852 * 179.76005 * 5 4 2 7 7 N 1.31868 * 120.76293 * 0.53065 * 6 5 4 8 8 C 1.31870 * 121.73026 * 359.73717 * 7 6 5 9 9 C 1.38203 * 120.76213 * 359.97438 * 8 7 6 10 10 N 1.46906 * 109.46957 * 240.00443 * 2 1 3 11 11 C 1.46900 * 111.00145 * 183.95264 * 10 2 1 12 12 C 1.46904 * 110.99620 * 60.00304 * 10 2 1 13 13 C 1.53006 * 109.46673 * 190.00005 * 12 10 2 14 14 O 1.42895 * 109.47036 * 65.00189 * 13 12 10 15 15 C 1.42901 * 113.99948 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47372 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99889 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00134 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00255 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00267 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47122 * 89.99598 * 20 18 16 22 22 H 1.48501 * 109.47335 * 209.99763 * 20 18 16 23 23 H 1.48496 * 109.47223 * 329.99926 * 20 18 16 24 24 H 1.08994 * 109.47902 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46931 * 299.99824 * 1 2 3 26 26 H 1.09003 * 109.47387 * 59.99263 * 1 2 3 27 27 H 1.07996 * 120.42021 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.61704 * 180.24647 * 6 5 4 29 29 H 1.08003 * 119.62243 * 179.97438 * 8 7 6 30 30 H 1.07999 * 120.41999 * 179.97438 * 9 8 7 31 31 H 1.08994 * 109.47267 * 296.04846 * 11 10 2 32 32 H 1.09004 * 109.46910 * 56.04737 * 11 10 2 33 33 H 1.08998 * 109.47187 * 176.04785 * 11 10 2 34 34 H 1.08992 * 109.47335 * 70.00243 * 12 10 2 35 35 H 1.08997 * 109.46819 * 309.99878 * 12 10 2 36 36 H 1.09001 * 109.47002 * 184.99666 * 13 12 10 37 37 H 1.08993 * 109.46955 * 305.00103 * 13 12 10 38 38 H 1.08995 * 109.47392 * 299.99575 * 15 14 13 39 39 H 1.09003 * 109.47182 * 59.99587 * 15 14 13 40 40 H 0.97000 * 120.00472 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.0685 -2.0955 1.2850 6 6 2.5403 -2.7122 2.4283 7 7 2.9429 -1.9993 3.4620 8 6 2.9176 -0.6809 3.4474 9 6 2.4642 0.0051 2.3366 10 7 2.0196 -0.6924 -1.1996 11 6 3.4850 -0.7945 -1.1872 12 6 1.5485 -0.0261 -2.4211 13 6 1.8625 -0.9040 -3.6343 14 8 1.1115 -2.1169 -3.5517 15 6 1.3323 -3.0127 -4.6429 16 6 0.4953 -4.2514 -4.4533 17 1 -0.1419 -4.3451 -3.5863 18 6 0.5422 -5.2647 -5.3870 19 7 -0.1887 -6.3456 -5.2218 20 14 1.6437 -5.1025 -6.8869 21 1 2.9849 -5.6610 -6.5788 22 1 1.0459 -5.8486 -8.0232 23 1 1.7763 -3.6690 -7.2510 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.7361 -2.6849 0.4433 28 1 2.5754 -3.7906 2.4774 29 1 3.2552 -0.1309 4.3134 30 1 2.4455 1.0849 2.3308 31 1 3.9191 0.2043 -1.2301 32 1 3.8069 -1.2916 -0.2721 33 1 3.8162 -1.3720 -2.0503 34 1 2.0518 0.9348 -2.5280 35 1 0.4722 0.1327 -2.3563 36 1 1.5941 -0.3720 -4.5470 37 1 2.9273 -1.1362 -3.6488 38 1 1.0526 -2.5243 -5.5763 39 1 2.3862 -3.2887 -4.6789 40 1 -0.1554 -7.0587 -5.8785 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293715968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:28 Heat of formation + Delta-G solvation = -0.156796 kcal Electronic energy + Delta-G solvation = -19917.173404 eV Core-core repulsion = 16925.493065 eV Total energy + Delta-G solvation = -2991.680338 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.41341 -38.25028 -36.48911 -33.34878 -32.51576 -31.20272 -30.31104 -29.44562 -27.46651 -25.15817 -24.27240 -23.45122 -21.83451 -21.50199 -20.09010 -16.97540 -16.73940 -16.69329 -15.78804 -15.68642 -15.48215 -14.82366 -14.49480 -14.32906 -14.07194 -13.80716 -13.53642 -13.37212 -12.75986 -12.48444 -12.30656 -12.13460 -12.04390 -11.74077 -11.50304 -11.37064 -11.07888 -10.85851 -10.69772 -10.42747 -9.84301 -9.56344 -9.45204 -9.14621 -9.12951 -8.80736 -8.43056 -8.21805 -6.09382 -4.07799 1.12003 1.22653 3.25250 3.32322 3.33424 3.73614 3.89166 4.36942 4.42162 4.45873 4.64510 4.79366 5.05365 5.08699 5.14239 5.22014 5.25444 5.26255 5.38062 5.53859 5.58570 5.63307 5.68172 5.74844 5.79453 5.85705 5.88240 6.02769 6.05940 6.16133 6.26715 6.36925 6.62490 6.71452 7.02015 7.12064 7.12339 7.62746 7.95164 8.07179 8.70783 9.03473 9.50454 11.03758 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.004307 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.060106 B = 6500.171979 C = 7030.958678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.120 3.880 3 H 0.047 0.953 4 C -0.032 4.032 5 C -0.140 4.140 6 C 0.093 3.907 7 N -0.491 5.491 8 C 0.090 3.910 9 C -0.174 4.174 10 N -0.519 5.519 11 C 0.021 3.979 12 C 0.057 3.943 13 C 0.062 3.938 14 O -0.364 6.364 15 C 0.168 3.832 16 C -0.514 4.514 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.875 3.125 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.267 1.267 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.151 0.849 28 H 0.156 0.844 29 H 0.151 0.849 30 H 0.129 0.871 31 H 0.019 0.981 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.038 0.962 38 H -0.001 1.001 39 H -0.004 1.004 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 15.698 11.883 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.040 4.040 5 C -0.160 4.160 6 C -0.064 4.064 7 N -0.200 5.200 8 C -0.067 4.067 9 C -0.195 4.195 10 N -0.243 5.243 11 C -0.127 4.127 12 C -0.070 4.070 13 C -0.016 4.016 14 O -0.283 6.283 15 C 0.093 3.907 16 C -0.552 4.552 17 H 0.101 0.899 18 C -0.130 4.130 19 N -0.535 5.535 20 Si 0.702 3.298 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.192 1.192 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.168 0.832 28 H 0.173 0.827 29 H 0.168 0.832 30 H 0.147 0.853 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.013 0.987 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.264 14.559 12.684 20.301 hybrid contribution 0.852 1.288 -1.901 2.449 sum 7.116 15.847 10.783 20.446 Atomic orbital electron populations 1.21894 0.92702 1.03833 1.01651 1.20558 0.96301 0.94311 0.87667 0.93529 1.20212 0.94905 0.94265 0.94661 1.22267 0.98916 0.94935 0.99840 1.22856 0.94342 1.00470 0.88688 1.67650 1.15172 1.07980 1.29191 1.22635 0.96370 0.90347 0.97322 1.21980 1.01809 1.01020 0.94670 1.61906 1.10126 1.51610 1.00694 1.22474 0.87315 0.99617 1.03307 1.22237 1.01789 0.93961 0.89063 1.22334 0.95501 0.88292 0.95458 1.88001 1.65516 1.27410 1.47335 1.20578 0.95467 0.89448 0.85250 1.20885 1.25570 0.98923 1.09864 0.89907 1.24760 0.95554 0.94908 0.97738 1.69878 1.40237 1.07257 1.36136 0.86872 0.81235 0.78648 0.83094 1.19988 1.20838 1.19200 0.90755 0.92382 0.91597 0.83159 0.82671 0.83183 0.85339 0.96242 0.91462 0.90626 0.94216 0.89305 0.94144 0.94405 0.98292 0.98666 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.97 37.15 0.33 -1.29 16 2 C 0.12 1.39 2.31 -68.86 -0.16 1.23 16 3 H 0.05 0.48 8.04 -51.93 -0.42 0.07 16 4 C -0.03 -0.37 3.72 -104.32 -0.39 -0.76 16 5 C -0.14 -1.80 8.25 -39.44 -0.33 -2.13 16 6 C 0.09 1.16 11.18 -17.55 -0.20 0.96 16 7 N -0.49 -6.31 10.36 -13.25 -0.14 -6.44 16 8 C 0.09 0.97 11.18 -17.55 -0.20 0.77 16 9 C -0.17 -1.77 9.78 -39.44 -0.39 -2.16 16 10 N -0.52 -7.17 4.00 -236.28 -0.95 -8.12 16 11 C 0.02 0.27 8.93 60.06 0.54 0.80 16 12 C 0.06 0.78 5.16 -3.82 -0.02 0.76 16 13 C 0.06 1.06 5.99 37.16 0.22 1.28 16 14 O -0.36 -8.32 10.27 -35.23 -0.36 -8.69 16 15 C 0.17 4.25 4.76 36.01 0.17 4.42 16 16 C -0.51 -15.27 9.99 -34.44 -0.34 -15.62 16 17 H 0.08 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 19 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 20 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 24 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 26 H 0.07 0.72 6.20 -51.93 -0.32 0.39 16 27 H 0.15 2.17 7.81 -52.49 -0.41 1.76 16 28 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 30 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.86 6.04 -51.93 -0.31 0.55 16 33 H 0.08 1.05 6.37 -51.93 -0.33 0.72 16 34 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.09 1.22 5.83 -51.93 -0.30 0.92 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.04 0.62 6.33 -51.93 -0.33 0.29 16 38 H 0.00 -0.01 7.20 -51.93 -0.37 -0.39 16 39 H 0.00 -0.11 7.57 -51.93 -0.39 -0.50 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -32.56 325.14 -7.45 -40.02 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -6.16 Total: -1.80 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -0.85 Total: -9.71 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: -0.31 Total: -41.48 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.36 Total: -8.69 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.56 -7.45 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293715968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.861 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds