Wall clock time and date at job start Mon Mar 30 2020 07:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47604 * 2 1 4 4 C 1.50701 * 109.47452 * 120.00583 * 2 1 3 5 5 C 1.38657 * 120.78551 * 79.71644 * 4 2 1 6 6 C 1.38203 * 119.15852 * 179.76005 * 5 4 2 7 7 N 1.31868 * 120.76293 * 0.53065 * 6 5 4 8 8 C 1.31870 * 121.73026 * 359.73717 * 7 6 5 9 9 C 1.38203 * 120.76213 * 359.97438 * 8 7 6 10 10 N 1.46906 * 109.46957 * 240.00443 * 2 1 3 11 11 C 1.46900 * 111.00145 * 183.95264 * 10 2 1 12 12 C 1.46904 * 110.99620 * 60.00304 * 10 2 1 13 13 C 1.53006 * 109.46673 * 190.00005 * 12 10 2 14 14 O 1.42895 * 109.47036 * 65.00189 * 13 12 10 15 15 C 1.42901 * 113.99948 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47372 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99889 * 0.02562 * 16 15 14 18 18 C 1.37868 * 120.00134 * 179.97438 * 16 15 14 19 19 N 1.31523 * 120.00255 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 120.00267 * 0.02562 * 18 16 15 21 21 H 1.48508 * 109.47122 * 89.99598 * 20 18 16 22 22 H 1.48501 * 109.47335 * 209.99763 * 20 18 16 23 23 H 1.48496 * 109.47223 * 329.99926 * 20 18 16 24 24 H 1.08994 * 109.47902 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46931 * 299.99824 * 1 2 3 26 26 H 1.09003 * 109.47387 * 59.99263 * 1 2 3 27 27 H 1.07996 * 120.42021 * 0.02562 * 5 4 2 28 28 H 1.08002 * 119.61704 * 180.24647 * 6 5 4 29 29 H 1.08003 * 119.62243 * 179.97438 * 8 7 6 30 30 H 1.07999 * 120.41999 * 179.97438 * 9 8 7 31 31 H 1.08994 * 109.47267 * 296.04846 * 11 10 2 32 32 H 1.09004 * 109.46910 * 56.04737 * 11 10 2 33 33 H 1.08998 * 109.47187 * 176.04785 * 11 10 2 34 34 H 1.08992 * 109.47335 * 70.00243 * 12 10 2 35 35 H 1.08997 * 109.46819 * 309.99878 * 12 10 2 36 36 H 1.09001 * 109.47002 * 184.99666 * 13 12 10 37 37 H 1.08993 * 109.46955 * 305.00103 * 13 12 10 38 38 H 1.08995 * 109.47392 * 299.99575 * 15 14 13 39 39 H 1.09003 * 109.47182 * 59.99587 * 15 14 13 40 40 H 0.97000 * 120.00472 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.0685 -2.0955 1.2850 6 6 2.5403 -2.7122 2.4283 7 7 2.9429 -1.9993 3.4620 8 6 2.9176 -0.6809 3.4474 9 6 2.4642 0.0051 2.3366 10 7 2.0196 -0.6924 -1.1996 11 6 3.4850 -0.7945 -1.1872 12 6 1.5485 -0.0261 -2.4211 13 6 1.8625 -0.9040 -3.6343 14 8 1.1115 -2.1169 -3.5517 15 6 1.3323 -3.0127 -4.6429 16 6 0.4953 -4.2514 -4.4533 17 1 -0.1419 -4.3451 -3.5863 18 6 0.5422 -5.2647 -5.3870 19 7 -0.1887 -6.3456 -5.2218 20 14 1.6437 -5.1025 -6.8869 21 1 2.9849 -5.6610 -6.5788 22 1 1.0459 -5.8486 -8.0232 23 1 1.7763 -3.6690 -7.2510 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 1.7361 -2.6849 0.4433 28 1 2.5754 -3.7906 2.4774 29 1 3.2552 -0.1309 4.3134 30 1 2.4455 1.0849 2.3308 31 1 3.9191 0.2043 -1.2301 32 1 3.8069 -1.2916 -0.2721 33 1 3.8162 -1.3720 -2.0503 34 1 2.0518 0.9348 -2.5280 35 1 0.4722 0.1327 -2.3563 36 1 1.5941 -0.3720 -4.5470 37 1 2.9273 -1.1362 -3.6488 38 1 1.0526 -2.5243 -5.5763 39 1 2.3862 -3.2887 -4.6789 40 1 -0.1554 -7.0587 -5.8785 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293715968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:28 Heat of formation + Delta-G solvation = -22.797804 kcal Electronic energy + Delta-G solvation = -19918.155191 eV Core-core repulsion = 16925.493065 eV Total energy + Delta-G solvation = -2992.662126 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.31911 -39.39641 -38.02276 -34.93253 -34.17742 -32.08977 -31.27109 -30.91665 -29.26728 -26.22065 -25.25994 -24.35214 -23.92715 -22.60647 -21.08420 -19.02721 -17.76316 -17.73903 -17.39207 -16.82876 -16.49640 -16.33807 -15.81769 -15.60579 -15.37309 -14.84059 -14.66861 -14.45910 -14.32022 -14.03092 -13.62447 -13.32086 -13.16802 -12.88145 -12.72918 -12.62489 -12.55849 -12.29437 -12.00154 -11.90374 -11.72788 -11.26884 -10.90465 -10.47553 -10.36168 -10.25628 -10.02675 -9.18229 -8.35624 -6.42849 0.24292 0.31678 1.32964 1.36045 1.46793 2.30027 2.79407 2.96066 2.97068 3.15918 3.54175 3.63683 3.94644 4.10806 4.14564 4.26177 4.27753 4.30360 4.37702 4.48614 4.52678 4.54959 4.63766 4.67678 4.75620 4.78004 4.82731 4.96711 4.99996 5.02495 5.08923 5.12490 5.31806 5.43788 5.46877 5.82707 5.95564 6.14526 6.17801 6.61762 6.83400 7.05992 7.21998 8.81706 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024447 B = 0.004307 C = 0.003981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.060106 B = 6500.171979 C = 7030.958678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.124 3.876 3 H 0.073 0.927 4 C -0.037 4.037 5 C -0.155 4.155 6 C 0.081 3.919 7 N -0.513 5.513 8 C 0.088 3.912 9 C -0.164 4.164 10 N -0.547 5.547 11 C 0.027 3.973 12 C 0.063 3.937 13 C 0.052 3.948 14 O -0.391 6.391 15 C 0.180 3.820 16 C -0.540 4.540 17 H 0.029 0.971 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.955 3.045 21 H -0.261 1.261 22 H -0.274 1.274 23 H -0.245 1.245 24 H 0.042 0.958 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.123 0.877 28 H 0.160 0.840 29 H 0.182 0.818 30 H 0.163 0.837 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.010 0.990 39 H 0.005 0.995 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.128 18.653 11.385 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.091 0.909 4 C -0.045 4.045 5 C -0.175 4.175 6 C -0.075 4.075 7 N -0.222 5.222 8 C -0.069 4.069 9 C -0.184 4.184 10 N -0.272 5.272 11 C -0.121 4.121 12 C -0.065 4.065 13 C -0.025 4.025 14 O -0.310 6.310 15 C 0.104 3.896 16 C -0.578 4.578 17 H 0.047 0.953 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.776 3.224 21 H -0.186 1.186 22 H -0.199 1.199 23 H -0.169 1.169 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.141 0.859 28 H 0.177 0.823 29 H 0.199 0.801 30 H 0.180 0.820 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.027 0.973 39 H 0.022 0.978 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.055 17.533 12.205 22.831 hybrid contribution 0.233 0.399 -1.610 1.675 sum 8.288 17.932 10.595 22.417 Atomic orbital electron populations 1.21873 0.92915 1.02147 1.02866 1.20590 0.96061 0.95183 0.86539 0.90923 1.20340 0.94971 0.93681 0.95521 1.22076 1.00326 0.95813 0.99298 1.22934 0.94769 1.00973 0.88780 1.67685 1.15958 1.09371 1.29219 1.23225 0.95362 0.89759 0.98547 1.22282 1.00152 1.02575 0.93412 1.61810 1.10795 1.53065 1.01572 1.22372 0.86949 1.00484 1.02249 1.22191 1.02088 0.94419 0.87757 1.22715 0.95352 0.86450 0.97998 1.87962 1.67016 1.29420 1.46603 1.20259 0.94675 0.88342 0.86313 1.21158 1.26147 1.01842 1.08675 0.95289 1.25827 0.97120 0.93965 1.01589 1.70041 1.42062 1.08396 1.37853 0.85621 0.78888 0.80006 0.77882 1.18590 1.19858 1.16855 0.93871 0.90399 0.91119 0.85885 0.82280 0.80081 0.81967 0.94009 0.92092 0.92243 0.90703 0.89620 0.92555 0.93615 0.97284 0.97751 0.91885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.97 71.98 0.65 -2.40 16 2 C 0.12 2.64 2.31 44.17 0.10 2.74 16 3 H 0.07 1.20 8.04 -2.39 -0.02 1.19 16 4 C -0.04 -0.81 3.72 -19.67 -0.07 -0.89 16 5 C -0.15 -4.16 8.25 22.36 0.18 -3.97 16 6 C 0.08 2.09 11.18 84.68 0.95 3.04 16 7 N -0.51 -12.85 10.36 -195.84 -2.03 -14.88 16 8 C 0.09 1.67 11.18 84.68 0.95 2.62 16 9 C -0.16 -2.86 9.78 22.36 0.22 -2.64 16 10 N -0.55 -14.57 4.00 -901.46 -3.61 -18.18 16 11 C 0.03 0.66 8.93 127.69 1.14 1.80 16 12 C 0.06 1.59 5.16 86.30 0.45 2.04 16 13 C 0.05 1.69 5.99 71.98 0.43 2.12 16 14 O -0.39 -18.08 10.27 -148.98 -1.53 -19.61 16 15 C 0.18 9.10 4.76 71.24 0.34 9.44 16 16 C -0.54 -33.32 9.99 25.60 0.26 -33.07 16 17 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 18 C 0.01 0.76 5.47 84.65 0.46 1.22 16 19 N -0.94 -60.07 13.96 21.45 0.30 -59.77 16 20 Si 0.95 43.74 27.47 68.60 1.88 45.62 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 H -0.25 -10.30 6.54 99.48 0.65 -9.65 16 24 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.07 1.44 6.20 -2.39 -0.01 1.43 16 27 H 0.12 3.93 7.81 -2.91 -0.02 3.91 16 28 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 29 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 30 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 1.54 6.04 -2.38 -0.01 1.52 16 33 H 0.06 1.61 6.37 -2.39 -0.02 1.59 16 34 H 0.08 1.40 8.12 -2.39 -0.02 1.39 16 35 H 0.09 2.23 5.83 -2.39 -0.01 2.21 16 36 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.42 6.33 -2.39 -0.02 1.40 16 38 H 0.01 0.46 7.20 -2.39 -0.02 0.44 16 39 H 0.00 0.23 7.57 -2.39 -0.02 0.21 16 40 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -73.60 325.14 2.01 -71.58 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.95 Total: 13.19 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 6.05 Total: -17.95 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -5.34 Total: -92.83 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.53 Total: -19.61 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -73.60 2.01 -71.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293715968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.786 kcal (2) G-P(sol) polarization free energy of solvation -73.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds