Wall clock time and date at job start Mon Mar 30 2020 06:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30837 * 125.90092 * 2 1 4 4 N 1.40081 * 108.20768 * 180.02562 * 3 2 1 5 5 C 1.46504 * 126.03575 * 180.02562 * 4 3 2 6 6 C 1.34947 * 107.92547 * 359.76063 * 4 3 2 7 7 C 1.50699 * 126.12956 * 180.23720 * 6 4 3 8 8 C 1.35325 * 107.74423 * 0.39017 * 6 4 3 9 9 C 1.50700 * 126.03723 * 179.87570 * 8 6 4 10 10 H 1.09003 * 109.48275 * 14.68637 * 9 8 6 11 11 C 1.53280 * 109.45397 * 254.69514 * 9 8 6 12 12 C 1.53179 * 109.06328 * 182.44890 * 11 9 8 13 13 C 1.53177 * 109.10692 * 56.94222 * 12 11 9 14 14 C 1.53091 * 109.16264 * 302.97408 * 13 12 11 15 15 H 1.09000 * 109.48011 * 297.61575 * 14 13 12 16 16 C 1.50705 * 109.47944 * 177.59322 * 14 13 12 17 17 H 1.07996 * 120.00034 * 359.97438 * 16 14 13 18 18 C 1.37877 * 119.99851 * 180.02562 * 16 14 13 19 19 N 1.31510 * 120.00176 * 359.97438 * 18 16 14 20 20 Si 1.86801 * 119.99765 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47153 * 60.00257 * 20 18 16 22 22 H 1.48506 * 109.46890 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47272 * 299.99855 * 20 18 16 24 24 O 1.42901 * 109.47878 * 134.71292 * 9 8 6 25 25 H 1.09003 * 109.46744 * 269.97264 * 1 2 3 26 26 H 1.09002 * 109.47293 * 29.96711 * 1 2 3 27 27 H 1.08999 * 109.47403 * 149.96913 * 1 2 3 28 28 H 1.09001 * 109.47060 * 89.97938 * 5 4 3 29 29 H 1.08999 * 109.46981 * 209.97668 * 5 4 3 30 30 H 1.08997 * 109.47046 * 329.97409 * 5 4 3 31 31 H 1.08999 * 109.46955 * 270.17936 * 7 6 4 32 32 H 1.09002 * 109.46801 * 30.17786 * 7 6 4 33 33 H 1.08995 * 109.47198 * 150.17816 * 7 6 4 34 34 H 1.09006 * 109.64318 * 62.53370 * 11 9 8 35 35 H 1.09002 * 109.50809 * 302.28687 * 11 9 8 36 36 H 1.09002 * 109.54484 * 297.03018 * 12 11 9 37 37 H 1.08999 * 109.54222 * 176.85184 * 12 11 9 38 38 H 1.09004 * 109.52253 * 62.88396 * 13 12 11 39 39 H 1.08999 * 109.52129 * 183.00522 * 13 12 11 40 40 H 0.97003 * 119.99932 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0003 6 6 3.6142 -0.7154 0.0044 7 6 4.8350 -1.5989 0.0107 8 6 2.3270 -1.1330 -0.0007 9 6 1.8599 -2.5658 -0.0005 10 1 2.6910 -3.2192 0.2649 11 6 1.3452 -2.9351 -1.3963 12 6 0.8164 -4.3725 -1.3703 13 6 -0.2723 -4.4870 -0.2989 14 6 0.3053 -4.0579 1.0523 15 1 1.1159 -4.7310 1.3314 16 6 -0.7759 -4.1113 2.1008 17 1 -1.7751 -4.4198 1.8309 18 6 -0.4897 -3.7652 3.4044 19 7 0.7268 -3.3890 3.7330 20 14 -1.8301 -3.8307 4.7039 21 1 -2.3521 -5.2171 4.8071 22 1 -1.2698 -3.4134 6.0143 23 1 -2.9339 -2.9132 4.3232 24 8 0.8067 -2.7234 0.9524 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3634 0.8903 -0.5133 27 1 -0.3634 -0.8897 -0.5143 28 1 5.0828 1.7154 1.0275 29 1 5.6093 0.9984 -0.5143 30 1 4.5563 2.4334 -0.5138 31 1 5.1337 -1.8131 -1.0154 32 1 5.6489 -1.0903 0.5275 33 1 4.6053 -2.5323 0.5247 34 1 2.1581 -2.8591 -2.1185 35 1 0.5408 -2.2561 -1.6791 36 1 1.6318 -5.0569 -1.1362 37 1 0.3973 -4.6245 -2.3445 38 1 -1.1094 -3.8393 -0.5596 39 1 -0.6161 -5.5195 -0.2378 40 1 0.9280 -3.1452 4.6500 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307980483.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:28 Heat of formation + Delta-G solvation = 14.665594 kcal Electronic energy + Delta-G solvation = -21069.257988 eV Core-core repulsion = 18078.220397 eV Total energy + Delta-G solvation = -2991.037591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92342 -37.89749 -33.82357 -32.97174 -32.35211 -31.85312 -29.79120 -28.92195 -26.79811 -25.54152 -24.86961 -22.81147 -21.60735 -19.51685 -19.01933 -18.74308 -16.51878 -16.02750 -15.37026 -14.65442 -14.55634 -14.21704 -13.89598 -13.61554 -13.29862 -13.16503 -12.89842 -12.64848 -12.42957 -12.32903 -12.11828 -11.90869 -11.53969 -11.48392 -11.30326 -10.88609 -10.83763 -10.57534 -10.34534 -10.21970 -10.10501 -9.77461 -9.39859 -8.80026 -8.55270 -8.44001 -7.91593 -7.57133 -5.93775 -4.05603 2.26270 2.87700 3.28757 3.36957 3.41361 3.43641 4.47529 4.71185 4.95772 5.13019 5.22381 5.31385 5.41230 5.47097 5.57857 5.62306 5.69008 5.70117 5.83475 5.91619 5.97972 6.07296 6.21948 6.32201 6.36773 6.41724 6.47710 6.59934 6.71698 6.76028 6.86903 6.95464 6.98510 6.99619 7.31830 7.45227 7.60172 7.96498 8.23911 8.37107 8.87357 9.25972 9.64369 11.13367 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019561 B = 0.006839 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.103411 B = 4093.268707 C = 4640.169479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.108 3.892 3 N -0.315 5.315 4 N -0.385 5.385 5 C 0.109 3.891 6 C 0.077 3.923 7 C -0.089 4.089 8 C -0.202 4.202 9 C 0.163 3.837 10 H 0.042 0.958 11 C -0.138 4.138 12 C -0.120 4.120 13 C -0.144 4.144 14 C 0.220 3.780 15 H 0.011 0.989 16 C -0.525 4.525 17 H 0.062 0.938 18 C 0.080 3.920 19 N -0.857 5.857 20 Si 0.888 3.112 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.275 1.275 24 O -0.343 6.343 25 H 0.082 0.918 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.772 4.442 -9.178 12.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.058 4.058 3 N -0.137 5.137 4 N -0.169 5.169 5 C -0.033 4.033 6 C -0.049 4.049 7 C -0.147 4.147 8 C -0.213 4.213 9 C 0.103 3.897 10 H 0.060 0.940 11 C -0.176 4.176 12 C -0.158 4.158 13 C -0.181 4.181 14 C 0.164 3.836 15 H 0.028 0.972 16 C -0.562 4.562 17 H 0.080 0.920 18 C -0.126 4.126 19 N -0.493 5.493 20 Si 0.715 3.285 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.201 1.201 24 O -0.262 6.262 25 H 0.101 0.899 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.002 6.027 -8.918 13.412 hybrid contribution -0.399 -0.940 0.661 1.217 sum 7.603 5.087 -8.257 12.323 Atomic orbital electron populations 1.20144 0.86463 1.01940 1.03668 1.22162 0.96988 0.89805 0.96839 1.77224 0.86025 1.22726 1.27752 1.48129 1.05387 1.03849 1.59489 1.21659 0.84244 0.94695 1.02742 1.20661 0.96740 0.84449 1.03012 1.20419 0.92872 0.98813 1.02599 1.19619 0.90722 0.96180 1.14757 1.19877 0.91737 0.89135 0.88972 0.94035 1.22190 1.00340 0.96934 0.98160 1.21630 0.99107 0.96269 0.98796 1.22260 0.97630 1.00699 0.97557 1.19664 0.93084 0.81180 0.89655 0.97153 1.20939 0.96262 1.47146 0.91900 0.91976 1.25040 0.95138 0.93957 0.98498 1.70032 1.18930 1.42091 1.18276 0.86747 0.82401 0.78446 0.80857 1.20202 1.21340 1.20078 1.88401 1.49516 1.31582 1.56688 0.89949 0.92556 0.89918 0.91400 0.90128 0.89825 0.90775 0.91606 0.89326 0.93019 0.91804 0.92827 0.93309 0.92525 0.92672 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.19 9.56 36.00 0.34 -0.85 16 2 C 0.11 2.20 7.16 -82.41 -0.59 1.61 16 3 N -0.31 -6.19 12.58 33.67 0.42 -5.77 16 4 N -0.39 -6.47 4.01 -63.88 -0.26 -6.72 16 5 C 0.11 1.20 11.09 59.85 0.66 1.86 16 6 C 0.08 1.34 6.93 -82.26 -0.57 0.77 16 7 C -0.09 -1.15 9.63 36.01 0.35 -0.80 16 8 C -0.20 -4.07 5.08 -105.05 -0.53 -4.60 16 9 C 0.16 3.41 2.72 -27.74 -0.08 3.33 16 10 H 0.04 0.88 6.81 -51.93 -0.35 0.53 16 11 C -0.14 -2.48 5.40 -26.49 -0.14 -2.62 16 12 C -0.12 -2.13 6.02 -26.55 -0.16 -2.29 16 13 C -0.14 -3.01 5.36 -26.59 -0.14 -3.15 16 14 C 0.22 5.60 2.50 -27.83 -0.07 5.53 16 15 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 16 C -0.53 -14.63 8.79 -34.44 -0.30 -14.93 16 17 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 18 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 19 N -0.86 -25.41 12.84 55.43 0.71 -24.70 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 O -0.34 -8.69 8.32 -35.23 -0.29 -8.98 16 25 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.08 1.56 6.23 -51.93 -0.32 1.24 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.70 7.74 -51.93 -0.40 0.30 16 33 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.16 6.68 -51.93 -0.35 0.81 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 322.02 15.07 4.85 4.85 Total: -1.00 -32.79 322.02 -7.29 -40.08 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.38 Total: -1.24 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -1.33 Total: -13.98 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.88 Total: -37.19 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: -0.29 Total: -8.98 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.79 -7.29 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307980483.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.749 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds