Wall clock time and date at job start Mon Mar 30 2020 06:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30836 * 125.89722 * 2 1 4 4 N 1.40092 * 108.20403 * 180.02562 * 3 2 1 5 5 C 1.46494 * 126.03721 * 180.02562 * 4 3 2 6 6 C 1.34945 * 107.92205 * 359.76215 * 4 3 2 7 7 C 1.50700 * 126.12473 * 180.23986 * 6 4 3 8 8 C 1.35311 * 107.75108 * 0.38575 * 6 4 3 9 9 C 1.50696 * 126.04567 * 179.87518 * 8 6 4 10 10 H 1.09001 * 109.47761 * 344.69212 * 9 8 6 11 11 C 1.53087 * 109.48249 * 104.71634 * 9 8 6 12 12 C 1.53183 * 109.16360 * 177.60857 * 11 9 8 13 13 C 1.53181 * 109.03303 * 303.01578 * 12 11 9 14 14 C 1.53090 * 109.16121 * 56.98389 * 13 12 11 15 15 H 1.08997 * 109.48513 * 62.38390 * 14 13 12 16 16 C 1.50706 * 109.48160 * 182.40633 * 14 13 12 17 17 H 1.08005 * 119.99758 * 0.02562 * 16 14 13 18 18 C 1.37871 * 120.00102 * 179.97438 * 16 14 13 19 19 N 1.31516 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99766 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47057 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47389 * 300.00068 * 20 18 16 23 23 H 1.48504 * 109.47102 * 60.00417 * 20 18 16 24 24 O 1.42901 * 109.49144 * 224.66927 * 9 8 6 25 25 H 1.09005 * 109.47260 * 269.97297 * 1 2 3 26 26 H 1.09005 * 109.47189 * 29.97238 * 1 2 3 27 27 H 1.09000 * 109.47870 * 149.96992 * 1 2 3 28 28 H 1.09001 * 109.47549 * 89.97581 * 5 4 3 29 29 H 1.09003 * 109.47380 * 209.97716 * 5 4 3 30 30 H 1.09008 * 109.47488 * 329.97513 * 5 4 3 31 31 H 1.08999 * 109.47347 * 270.17540 * 7 6 4 32 32 H 1.09002 * 109.47633 * 30.17403 * 7 6 4 33 33 H 1.09002 * 109.47013 * 150.17634 * 7 6 4 34 34 H 1.08998 * 109.52467 * 57.69804 * 11 9 8 35 35 H 1.09001 * 109.52021 * 297.50894 * 11 9 8 36 36 H 1.08996 * 109.54446 * 183.15516 * 12 11 9 37 37 H 1.08999 * 109.54516 * 62.87985 * 12 11 9 38 38 H 1.09002 * 109.52638 * 297.07740 * 13 12 11 39 39 H 1.09005 * 109.57480 * 176.91692 * 13 12 11 40 40 H 0.97001 * 119.99646 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7898 1.5007 -0.0003 6 6 3.6141 -0.7153 0.0044 7 6 4.8349 -1.5989 0.0108 8 6 2.3271 -1.1330 -0.0007 9 6 1.8598 -2.5657 -0.0005 10 1 2.6906 -3.2190 -0.2670 11 6 1.3468 -2.9352 1.3937 12 6 0.8187 -4.3729 1.3705 13 6 -0.2716 -4.4874 0.3007 14 6 0.3040 -4.0580 -1.0513 15 1 1.1143 -4.7309 -1.3318 16 6 -0.7787 -4.1114 -2.0983 17 1 -1.7775 -4.4202 -1.8271 18 6 -0.4944 -3.7651 -3.4022 19 7 0.7216 -3.3886 -3.7325 20 14 -1.8363 -3.8320 -4.7001 21 1 -1.2781 -3.4141 -6.0112 22 1 -2.3571 -5.2189 -4.8026 23 1 -2.9405 -2.9155 -4.3181 24 8 0.8054 -2.7235 -0.9519 25 1 -0.3634 -0.0005 1.0277 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3635 -0.8897 -0.5143 28 1 5.0828 1.7154 1.0275 29 1 5.6093 0.9983 -0.5143 30 1 4.5563 2.4335 -0.5138 31 1 5.1338 -1.8132 -1.0153 32 1 5.6489 -1.0904 0.5275 33 1 4.6052 -2.5323 0.5247 34 1 0.5427 -2.2563 1.6778 35 1 2.1613 -2.8580 2.1139 36 1 0.4006 -4.6236 2.3454 37 1 1.6339 -5.0571 1.1350 38 1 -1.1084 -3.8399 0.5625 39 1 -0.6155 -5.5200 0.2387 40 1 1.4185 -3.3542 -3.0586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307980485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:32 Heat of formation + Delta-G solvation = 7.614140 kcal Electronic energy + Delta-G solvation = -21131.905350 eV Core-core repulsion = 18140.561985 eV Total energy + Delta-G solvation = -2991.343365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02056 -38.14912 -33.92485 -33.20488 -32.53047 -31.90263 -29.73839 -28.97793 -26.80580 -25.47897 -24.69520 -22.83452 -21.78723 -19.70578 -19.13961 -18.88696 -17.01082 -16.13796 -15.45743 -14.74567 -14.46970 -14.09223 -13.86396 -13.63980 -13.45747 -13.30643 -13.06739 -12.95299 -12.65251 -12.43875 -12.06364 -11.78381 -11.64856 -11.47447 -11.33892 -11.17194 -10.76113 -10.43543 -10.43254 -10.25203 -10.05761 -9.98484 -9.44787 -8.64402 -8.56014 -8.35838 -8.10291 -7.72984 -6.27870 -4.06546 2.17571 2.80006 3.17504 3.48057 3.51223 3.68983 4.57191 4.64417 4.85976 5.03182 5.15881 5.23340 5.36284 5.42235 5.51991 5.54396 5.57973 5.62375 5.72739 5.84318 5.90263 5.96079 6.09911 6.18316 6.20309 6.30061 6.35051 6.50334 6.62084 6.68144 6.79197 6.79406 6.83136 6.87762 7.25618 7.35566 7.38696 8.15160 8.18808 8.45383 8.85980 8.98068 9.75938 11.12479 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.019691 B = 0.006847 C = 0.006047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.610666 B = 4088.271028 C = 4629.454702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.109 3.891 3 N -0.312 5.312 4 N -0.384 5.384 5 C 0.108 3.892 6 C 0.079 3.921 7 C -0.089 4.089 8 C -0.208 4.208 9 C 0.162 3.838 10 H 0.042 0.958 11 C -0.136 4.136 12 C -0.122 4.122 13 C -0.136 4.136 14 C 0.203 3.797 15 H 0.003 0.997 16 C -0.600 4.600 17 H 0.055 0.945 18 C 0.033 3.967 19 N -0.887 5.887 20 Si 1.066 2.934 21 H -0.283 1.283 22 H -0.288 1.288 23 H -0.287 1.287 24 O -0.361 6.361 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.108 0.892 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.545 4.290 9.469 12.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.057 4.057 3 N -0.135 5.135 4 N -0.167 5.167 5 C -0.034 4.034 6 C -0.047 4.047 7 C -0.148 4.148 8 C -0.220 4.220 9 C 0.103 3.897 10 H 0.060 0.940 11 C -0.174 4.174 12 C -0.159 4.159 13 C -0.174 4.174 14 C 0.148 3.852 15 H 0.020 0.980 16 C -0.637 4.637 17 H 0.074 0.926 18 C -0.176 4.176 19 N -0.522 5.522 20 Si 0.894 3.106 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.213 1.213 24 O -0.280 6.280 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.126 0.874 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.361 6.077 7.756 12.299 hybrid contribution 0.560 -1.177 1.897 2.301 sum 7.920 4.900 9.653 13.413 Atomic orbital electron populations 1.20355 0.86508 1.04820 1.02058 1.22170 0.97012 0.89703 0.96776 1.77252 0.85990 1.22729 1.27488 1.48148 1.05466 1.03820 1.59234 1.21680 0.84267 0.94914 1.02544 1.20667 0.96659 0.84558 1.02812 1.20420 0.92772 0.98231 1.03332 1.19593 0.90830 0.96030 1.15502 1.19855 0.91255 0.89399 0.89233 0.94001 1.22110 1.00476 0.96980 0.97867 1.21650 0.99075 0.96221 0.98970 1.22121 0.97611 1.00806 0.96818 1.19883 0.93257 0.80689 0.91389 0.97954 1.21852 0.96906 1.51225 0.93708 0.92628 1.25796 1.00480 0.92675 0.98602 1.70642 1.02118 1.40588 1.38834 0.83609 0.74690 0.76357 0.75922 1.20845 1.21469 1.21334 1.88376 1.49949 1.32402 1.57297 0.91665 0.91897 0.87398 0.91479 0.89996 0.89632 0.90191 0.91577 0.89789 0.91652 0.92869 0.93044 0.92849 0.92332 0.92562 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.49 10.08 36.00 0.36 -1.13 16 2 C 0.11 2.22 7.16 -82.41 -0.59 1.63 16 3 N -0.31 -6.10 12.58 33.67 0.42 -5.68 16 4 N -0.38 -6.35 4.01 -63.89 -0.26 -6.60 16 5 C 0.11 1.16 11.09 59.84 0.66 1.83 16 6 C 0.08 1.34 6.93 -82.27 -0.57 0.77 16 7 C -0.09 -1.11 9.46 36.01 0.34 -0.77 16 8 C -0.21 -4.13 5.08 -105.06 -0.53 -4.66 16 9 C 0.16 3.32 2.78 -27.84 -0.08 3.24 16 10 H 0.04 0.85 7.15 -51.93 -0.37 0.48 16 11 C -0.14 -2.42 5.40 -26.59 -0.14 -2.56 16 12 C -0.12 -2.14 6.03 -26.54 -0.16 -2.30 16 13 C -0.14 -2.86 5.36 -26.59 -0.14 -3.00 16 14 C 0.20 5.15 2.10 -27.83 -0.06 5.09 16 15 H 0.00 0.08 8.01 -51.93 -0.42 -0.34 16 16 C -0.60 -16.91 8.79 -34.44 -0.30 -17.22 16 17 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 18 C 0.03 0.96 5.40 -17.82 -0.10 0.87 16 19 N -0.89 -27.19 13.53 55.43 0.75 -26.44 16 20 Si 1.07 25.32 29.90 -169.99 -5.08 20.24 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 O -0.36 -8.97 6.66 -35.23 -0.23 -9.20 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.11 2.34 6.15 -51.93 -0.32 2.02 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.69 7.67 -51.93 -0.40 0.29 16 30 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.62 7.74 -51.93 -0.40 0.22 16 33 H 0.08 1.01 7.44 -51.93 -0.39 0.62 16 34 H 0.06 1.19 7.98 -51.93 -0.41 0.77 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.28 8.67 6.47 -40.82 -0.26 8.41 16 LS Contribution 321.42 15.07 4.84 4.84 Total: -1.00 -33.44 321.42 -7.27 -40.70 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.40 Total: 0.34 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -1.31 Total: -18.21 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: 0.92 Total: -38.72 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.23 Total: -9.20 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.08 Total: 20.24 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.44 -7.27 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307980485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.316 kcal (2) G-P(sol) polarization free energy of solvation -33.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds