Wall clock time and date at job start Mon Mar 30 2020 07:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47567 * 2 1 4 4 N 1.40085 * 126.03983 * 90.01838 * 3 2 1 5 5 C 1.30834 * 108.20502 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.89652 * 179.97438 * 5 4 3 7 7 C 1.39869 * 108.20295 * 0.24404 * 5 4 3 8 8 C 1.50698 * 126.03911 * 179.71583 * 7 5 4 9 9 H 1.08997 * 110.27833 * 197.11789 * 8 7 5 10 10 C 1.54954 * 110.30804 * 75.02602 * 8 7 5 11 11 C 1.55307 * 100.94352 * 204.63976 * 10 8 7 12 12 C 1.54385 * 102.25236 * 34.13460 * 11 10 8 13 13 H 1.08997 * 109.83417 * 98.15383 * 12 11 10 14 14 C 1.50699 * 109.82890 * 219.13101 * 12 11 10 15 15 H 1.07999 * 120.00317 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99893 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99655 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00024 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47110 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47026 * 120.00211 * 18 16 14 21 21 H 1.48497 * 109.47341 * 240.00189 * 18 16 14 22 22 O 1.43240 * 107.58776 * 338.63906 * 12 11 10 23 23 C 1.34949 * 126.03244 * 270.02795 * 3 2 1 24 24 C 1.50698 * 126.13332 * 359.97438 * 23 3 2 25 25 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47345 * 300.00156 * 1 2 3 27 27 H 1.09001 * 109.46870 * 60.00152 * 1 2 3 28 28 H 1.09005 * 109.47219 * 239.99388 * 2 1 3 29 29 H 1.09001 * 109.46870 * 119.99848 * 2 1 3 30 30 H 1.09002 * 109.47152 * 90.02599 * 6 5 4 31 31 H 1.09001 * 109.46980 * 330.02699 * 6 5 4 32 32 H 1.09004 * 109.47113 * 210.02680 * 6 5 4 33 33 H 1.09000 * 111.12275 * 322.56136 * 10 8 7 34 34 H 1.08999 * 111.12123 * 86.71853 * 10 8 7 35 35 H 1.08991 * 110.84853 * 152.32474 * 11 10 8 36 36 H 1.09001 * 110.84703 * 275.94466 * 11 10 8 37 37 H 0.97001 * 119.99335 * 179.97438 * 17 16 14 38 38 H 1.08993 * 109.46893 * 90.02138 * 24 23 3 39 39 H 1.08998 * 109.47058 * 210.03263 * 24 23 3 40 40 H 1.09002 * 109.46540 * 330.02741 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2935 2.1581 1.1327 5 6 2.7081 3.3325 0.7320 6 6 3.1128 4.4782 1.6235 7 6 2.7050 3.3431 -0.6666 8 6 3.1047 4.5003 -1.5453 9 1 2.7295 4.3529 -2.5580 10 6 4.6463 4.6568 -1.5604 11 6 4.7864 6.1610 -1.9203 12 6 3.5604 6.7819 -1.2169 13 1 3.8603 7.2105 -0.2607 14 6 2.9563 7.8505 -2.0911 15 1 3.3944 8.0731 -3.0528 16 6 1.8441 8.5441 -1.6631 17 7 1.3109 8.2734 -0.4917 18 14 1.0957 9.8692 -2.7463 19 1 1.8771 9.9800 -4.0042 20 1 -0.3094 9.5113 -3.0669 21 1 1.1240 11.1692 -2.0292 22 8 2.6078 5.7339 -1.0022 23 6 2.2826 2.1298 -1.0913 24 6 2.1285 1.6947 -2.5259 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 4.1795 4.4125 1.8380 31 1 2.5510 4.4287 2.5563 32 1 2.9006 5.4220 1.1212 33 1 5.0720 4.4462 -0.5793 34 1 5.0976 4.0259 -2.3260 35 1 5.7129 6.5713 -1.5188 36 1 4.7308 6.3086 -2.9989 37 1 0.5287 8.7616 -0.1905 38 1 1.1226 1.9324 -2.8716 39 1 2.8584 2.2171 -3.1443 40 1 2.2933 0.6197 -2.5991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307995085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:38 Heat of formation + Delta-G solvation = 17.623972 kcal Electronic energy + Delta-G solvation = -20770.608635 eV Core-core repulsion = 17779.699328 eV Total energy + Delta-G solvation = -2990.909306 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.99570 -37.90398 -34.64285 -32.72473 -32.15096 -30.75302 -30.54111 -28.59868 -26.98675 -26.39718 -24.34056 -22.77175 -21.13320 -20.12562 -19.01173 -18.93709 -16.43443 -16.27563 -15.35844 -15.07585 -14.75405 -14.42431 -13.92958 -13.44895 -13.12706 -12.96938 -12.92185 -12.82650 -12.41913 -12.25361 -12.01653 -11.80551 -11.66216 -11.51494 -11.36374 -11.20599 -10.88607 -10.69154 -10.49691 -10.37916 -10.12694 -9.96110 -9.59504 -9.10593 -8.59485 -8.46486 -7.89682 -7.58166 -5.91215 -4.04193 2.22488 2.80160 3.23753 3.34326 3.42183 3.45219 4.49006 4.57202 4.88909 4.95061 5.06724 5.13943 5.26113 5.32320 5.44331 5.58945 5.62465 5.64303 5.68696 5.80023 5.88732 5.93695 5.97953 6.05627 6.17578 6.29747 6.38480 6.45160 6.60197 6.68345 6.78094 6.84812 6.86866 7.02825 7.31601 7.43811 7.75190 7.96446 8.22810 8.37382 8.72120 9.14286 9.67044 11.15286 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.005507 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.564280 B = 5083.523666 C = 5226.957299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.134 3.866 3 N -0.380 5.380 4 N -0.313 5.313 5 C 0.108 3.892 6 C -0.082 4.082 7 C -0.213 4.213 8 C 0.155 3.845 9 H 0.054 0.946 10 C -0.146 4.146 11 C -0.146 4.146 12 C 0.206 3.794 13 H 0.038 0.962 14 C -0.543 4.543 15 H 0.058 0.942 16 C 0.080 3.920 17 N -0.861 5.861 18 Si 0.886 3.114 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 O -0.346 6.346 23 C 0.075 3.925 24 C -0.088 4.088 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.259 0.741 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.315 -15.099 -1.249 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.164 5.164 4 N -0.135 5.135 5 C -0.058 4.058 6 C -0.141 4.141 7 C -0.224 4.224 8 C 0.095 3.905 9 H 0.072 0.928 10 C -0.184 4.184 11 C -0.184 4.184 12 C 0.150 3.850 13 H 0.056 0.944 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.126 4.126 17 N -0.498 5.498 18 Si 0.713 3.287 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 O -0.266 6.266 23 C -0.050 4.050 24 C -0.146 4.146 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.668 -15.916 -0.007 16.003 hybrid contribution -0.246 1.041 -1.369 1.737 sum 1.422 -14.875 -1.376 15.006 Atomic orbital electron populations 1.22185 0.94731 1.02451 1.03425 1.21474 0.94937 0.78735 1.03586 1.48340 1.53006 1.11629 1.03404 1.77236 1.24366 1.04432 1.07446 1.22192 0.96653 0.93250 0.93741 1.20416 1.00037 0.96004 0.97594 1.19931 1.13046 0.95463 0.93993 1.20753 0.91312 0.84993 0.93469 0.92827 1.23227 0.96954 0.97331 1.00878 1.23217 1.00178 0.93665 1.01304 1.20275 0.84033 0.85685 0.94980 0.94392 1.21435 1.13976 1.18343 1.04342 0.92378 1.25032 0.96543 0.96292 0.94709 1.70036 1.21370 1.39799 1.18587 0.86664 0.79261 0.81800 0.80932 1.19773 1.21016 1.21004 1.88778 1.44063 1.14663 1.79078 1.20666 1.01515 0.92421 0.90435 1.20405 1.03590 1.01010 0.89593 0.90977 0.91632 0.92019 0.89564 0.89285 0.91748 0.92060 0.87002 0.91638 0.92219 0.92383 0.91731 0.93143 0.90425 0.89730 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 10.24 37.15 0.38 -1.32 16 2 C 0.13 1.48 6.96 -4.04 -0.03 1.45 16 3 N -0.38 -6.11 3.61 -57.14 -0.21 -6.31 16 4 N -0.31 -5.98 12.58 33.67 0.42 -5.56 16 5 C 0.11 2.16 7.17 -82.41 -0.59 1.57 16 6 C -0.08 -1.56 10.23 36.01 0.37 -1.19 16 7 C -0.21 -4.18 5.14 -105.05 -0.54 -4.72 16 8 C 0.15 3.22 3.56 -26.85 -0.10 3.12 16 9 H 0.05 1.10 7.29 -51.93 -0.38 0.72 16 10 C -0.15 -2.68 6.56 -24.48 -0.16 -2.84 16 11 C -0.15 -2.99 6.53 -24.78 -0.16 -3.15 16 12 C 0.21 5.22 3.26 -27.16 -0.09 5.13 16 13 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 14 C -0.54 -15.16 8.75 -34.44 -0.30 -15.46 16 15 H 0.06 1.58 7.52 -52.49 -0.39 1.19 16 16 C 0.08 2.27 5.41 -17.82 -0.10 2.17 16 17 N -0.86 -25.63 12.93 55.43 0.72 -24.91 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 O -0.35 -8.87 7.98 -35.23 -0.28 -9.15 16 23 C 0.08 1.25 6.93 -82.26 -0.57 0.68 16 24 C -0.09 -1.06 9.68 36.00 0.35 -0.71 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.72 7.05 -51.93 -0.37 0.35 16 29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.11 2.48 5.88 -51.93 -0.31 2.18 16 33 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.31 7.65 -51.93 -0.40 0.92 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 0.99 7.51 -51.93 -0.39 0.60 16 40 H 0.06 0.59 7.08 -51.93 -0.37 0.23 16 LS Contribution 326.14 15.07 4.91 4.91 Total: -1.00 -32.75 326.14 -7.37 -40.12 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.38 Total: -0.29 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.54 Total: -15.29 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.93 Total: -36.78 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -0.28 Total: -9.15 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.75 -7.37 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307995085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.741 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds