Wall clock time and date at job start Mon Mar 30 2020 07:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46499 * 109.47567 * 2 1 4 4 N 1.40085 * 126.03983 * 90.01838 * 3 2 1 5 5 C 1.30834 * 108.20502 * 180.02562 * 4 3 2 6 6 C 1.50703 * 125.89652 * 179.97438 * 5 4 3 7 7 C 1.39869 * 108.20295 * 0.24404 * 5 4 3 8 8 C 1.50698 * 126.03911 * 179.71583 * 7 5 4 9 9 H 1.08997 * 110.27833 * 197.11789 * 8 7 5 10 10 C 1.54954 * 110.30804 * 75.02602 * 8 7 5 11 11 C 1.55307 * 100.94352 * 204.63976 * 10 8 7 12 12 C 1.54385 * 102.25236 * 34.13460 * 11 10 8 13 13 H 1.08997 * 109.83417 * 98.15383 * 12 11 10 14 14 C 1.50699 * 109.82890 * 219.13101 * 12 11 10 15 15 H 1.07999 * 120.00317 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99893 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99655 * 0.02562 * 16 14 12 18 18 Si 1.86799 * 120.00024 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47110 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47026 * 120.00211 * 18 16 14 21 21 H 1.48497 * 109.47341 * 240.00189 * 18 16 14 22 22 O 1.43240 * 107.58776 * 338.63906 * 12 11 10 23 23 C 1.34949 * 126.03244 * 270.02795 * 3 2 1 24 24 C 1.50698 * 126.13332 * 359.97438 * 23 3 2 25 25 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47345 * 300.00156 * 1 2 3 27 27 H 1.09001 * 109.46870 * 60.00152 * 1 2 3 28 28 H 1.09005 * 109.47219 * 239.99388 * 2 1 3 29 29 H 1.09001 * 109.46870 * 119.99848 * 2 1 3 30 30 H 1.09002 * 109.47152 * 90.02599 * 6 5 4 31 31 H 1.09001 * 109.46980 * 330.02699 * 6 5 4 32 32 H 1.09004 * 109.47113 * 210.02680 * 6 5 4 33 33 H 1.09000 * 111.12275 * 322.56136 * 10 8 7 34 34 H 1.08999 * 111.12123 * 86.71853 * 10 8 7 35 35 H 1.08991 * 110.84853 * 152.32474 * 11 10 8 36 36 H 1.09001 * 110.84703 * 275.94466 * 11 10 8 37 37 H 0.97001 * 119.99335 * 179.97438 * 17 16 14 38 38 H 1.08993 * 109.46893 * 90.02138 * 24 23 3 39 39 H 1.08998 * 109.47058 * 210.03263 * 24 23 3 40 40 H 1.09002 * 109.46540 * 330.02741 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2935 2.1581 1.1327 5 6 2.7081 3.3325 0.7320 6 6 3.1128 4.4782 1.6235 7 6 2.7050 3.3431 -0.6666 8 6 3.1047 4.5003 -1.5453 9 1 2.7295 4.3529 -2.5580 10 6 4.6463 4.6568 -1.5604 11 6 4.7864 6.1610 -1.9203 12 6 3.5604 6.7819 -1.2169 13 1 3.8603 7.2105 -0.2607 14 6 2.9563 7.8505 -2.0911 15 1 3.3944 8.0731 -3.0528 16 6 1.8441 8.5441 -1.6631 17 7 1.3109 8.2734 -0.4917 18 14 1.0957 9.8692 -2.7463 19 1 1.8771 9.9800 -4.0042 20 1 -0.3094 9.5113 -3.0669 21 1 1.1240 11.1692 -2.0292 22 8 2.6078 5.7339 -1.0022 23 6 2.2826 2.1298 -1.0913 24 6 2.1285 1.6947 -2.5259 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5138 0.8900 30 1 4.1795 4.4125 1.8380 31 1 2.5510 4.4287 2.5563 32 1 2.9006 5.4220 1.1212 33 1 5.0720 4.4462 -0.5793 34 1 5.0976 4.0259 -2.3260 35 1 5.7129 6.5713 -1.5188 36 1 4.7308 6.3086 -2.9989 37 1 0.5287 8.7616 -0.1905 38 1 1.1226 1.9324 -2.8716 39 1 2.8584 2.2171 -3.1443 40 1 2.2933 0.6197 -2.5991 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307995085.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:37 Heat of formation + Delta-G solvation = -2.606714 kcal Electronic energy + Delta-G solvation = -20771.485903 eV Core-core repulsion = 17779.699328 eV Total energy + Delta-G solvation = -2991.786575 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.33032 -39.63660 -35.79725 -34.66027 -33.53094 -32.44729 -31.89089 -30.16580 -28.38565 -27.79346 -26.05861 -23.94576 -22.68276 -21.90798 -20.42140 -20.23401 -18.50700 -17.49186 -17.00466 -16.60201 -16.32613 -15.83834 -15.31994 -14.82857 -14.73544 -14.26166 -14.22552 -13.94529 -13.82901 -13.65441 -13.55301 -13.18665 -13.02716 -12.87429 -12.79844 -12.58052 -12.40342 -12.27625 -12.12487 -12.06435 -11.84983 -11.54745 -11.26537 -10.96424 -10.61975 -9.91640 -9.70593 -9.07649 -8.05415 -6.26124 0.92249 1.41721 1.42892 1.54845 1.66895 1.77236 2.45293 3.16736 3.53140 3.76730 3.90263 4.03076 4.06926 4.11345 4.20836 4.27062 4.36095 4.41546 4.50832 4.69135 4.72172 4.75097 4.78104 4.79782 4.82143 4.90321 5.03599 5.06786 5.13262 5.20242 5.21219 5.26933 5.38740 5.47028 5.70128 5.79347 5.91847 6.26638 6.28926 6.70757 6.84704 7.19103 7.50987 9.01005 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.024479 B = 0.005507 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.564280 B = 5083.523666 C = 5226.957299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.121 3.879 3 N -0.373 5.373 4 N -0.336 5.336 5 C 0.083 3.917 6 C -0.073 4.073 7 C -0.253 4.253 8 C 0.151 3.849 9 H 0.054 0.946 10 C -0.129 4.129 11 C -0.138 4.138 12 C 0.201 3.799 13 H 0.003 0.997 14 C -0.560 4.560 15 H 0.061 0.939 16 C 0.024 3.976 17 N -0.901 5.901 18 Si 0.954 3.046 19 H -0.261 1.261 20 H -0.284 1.284 21 H -0.278 1.278 22 O -0.377 6.377 23 C 0.091 3.909 24 C -0.088 4.088 25 H 0.107 0.893 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.597 -17.392 -3.245 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.002 3.998 3 N -0.156 5.156 4 N -0.159 5.159 5 C -0.082 4.082 6 C -0.132 4.132 7 C -0.264 4.264 8 C 0.091 3.909 9 H 0.072 0.928 10 C -0.167 4.167 11 C -0.175 4.175 12 C 0.145 3.855 13 H 0.021 0.979 14 C -0.598 4.598 15 H 0.079 0.921 16 C -0.177 4.177 17 N -0.539 5.539 18 Si 0.780 3.220 19 H -0.185 1.185 20 H -0.211 1.211 21 H -0.204 1.204 22 O -0.297 6.297 23 C -0.038 4.038 24 C -0.146 4.146 25 H 0.126 0.874 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.959 -18.229 -2.002 18.443 hybrid contribution -0.368 1.609 -0.734 1.807 sum 1.592 -16.620 -2.735 16.918 Atomic orbital electron populations 1.22153 0.93969 1.04282 1.01799 1.22007 0.95536 0.76309 1.05942 1.48795 1.51440 1.12882 1.02473 1.77139 1.25014 1.04550 1.09237 1.22265 0.97800 0.93755 0.94339 1.20231 1.01187 0.94468 0.97291 1.19953 1.16194 0.96528 0.93738 1.20888 0.92798 0.83709 0.93470 0.92792 1.23136 0.95502 0.96113 1.01954 1.23097 0.98552 0.94991 1.00900 1.20130 0.85943 0.86010 0.93440 0.97919 1.21874 1.14096 1.19192 1.04602 0.92103 1.25885 0.97188 0.98672 0.95980 1.70197 1.21931 1.41268 1.20491 0.85588 0.78125 0.78915 0.79419 1.18513 1.21052 1.20400 1.88707 1.44855 1.16479 1.79686 1.21245 0.98743 0.91359 0.92405 1.20592 1.04148 1.03477 0.86340 0.87408 0.94300 0.92555 0.85764 0.88401 0.90123 0.91724 0.90648 0.91655 0.88801 0.90819 0.91367 0.93332 0.89748 0.89197 0.88010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.24 71.98 0.74 -2.10 16 2 C 0.12 2.26 6.96 86.38 0.60 2.86 16 3 N -0.37 -11.25 3.61 -334.70 -1.21 -12.46 16 4 N -0.34 -12.79 12.58 -47.38 -0.60 -13.39 16 5 C 0.08 3.40 7.17 43.10 0.31 3.71 16 6 C -0.07 -2.94 10.23 71.24 0.73 -2.21 16 7 C -0.25 -9.85 5.14 -20.14 -0.10 -9.96 16 8 C 0.15 6.26 3.56 30.52 0.11 6.37 16 9 H 0.05 2.19 7.29 -2.39 -0.02 2.17 16 10 C -0.13 -4.60 6.56 32.05 0.21 -4.39 16 11 C -0.14 -5.59 6.53 31.86 0.21 -5.39 16 12 C 0.20 10.54 3.26 30.32 0.10 10.64 16 13 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 14 C -0.56 -31.91 8.75 25.60 0.22 -31.68 16 15 H 0.06 3.33 7.52 -2.91 -0.02 3.31 16 16 C 0.02 1.42 5.41 84.66 0.46 1.87 16 17 N -0.90 -55.75 12.93 21.45 0.28 -55.47 16 18 Si 0.95 44.85 29.54 68.60 2.03 46.88 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 O -0.38 -20.08 7.98 -148.98 -1.19 -21.27 16 23 C 0.09 2.82 6.93 41.41 0.29 3.10 16 24 C -0.09 -1.80 9.68 71.24 0.69 -1.11 16 25 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.12 1.41 7.05 -2.38 -0.02 1.40 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.07 3.61 5.88 -2.38 -0.01 3.59 16 33 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 34 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.07 2.70 7.65 -2.39 -0.02 2.68 16 37 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.79 7.51 -2.39 -0.02 1.77 16 40 H 0.10 1.33 7.08 -2.39 -0.02 1.31 16 Total: -1.00 -74.43 326.14 4.88 -69.55 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.01 Total: 14.44 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.56 Total: -28.29 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -1.53 Total: -81.32 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -1.19 Total: -21.27 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.43 4.88 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307995085.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.945 kcal (2) G-P(sol) polarization free energy of solvation -74.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds