Wall clock time and date at job start Mon Mar 30 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 H 1.08999 * 109.47444 * 305.42366 * 3 2 1 5 5 C 1.50697 * 109.47147 * 65.43105 * 3 2 1 6 6 H 1.08004 * 120.00009 * 35.23654 * 5 3 2 7 7 C 1.37879 * 120.00012 * 214.96531 * 5 3 2 8 8 N 1.31518 * 120.00279 * 174.68292 * 7 5 3 9 9 Si 1.86796 * 119.99878 * 354.67603 * 7 5 3 10 10 H 1.48504 * 109.47119 * 94.27346 * 9 7 5 11 11 H 1.48499 * 109.47560 * 214.27459 * 9 7 5 12 12 H 1.48502 * 109.47204 * 334.27555 * 9 7 5 13 13 C 1.50707 * 109.46790 * 185.42672 * 3 2 1 14 14 O 1.21311 * 119.99768 * 271.91979 * 13 3 2 15 15 C 1.46673 * 119.99816 * 91.92576 * 13 3 2 16 16 C 1.41549 * 126.47638 * 357.29411 * 15 13 3 17 17 C 1.50700 * 126.00663 * 0.02562 * 16 15 13 18 18 N 1.30365 * 107.98289 * 180.02562 * 16 15 13 19 19 N 1.39910 * 109.00758 * 359.97438 * 18 16 15 20 20 C 1.46501 * 125.70399 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47143 * 90.02914 * 20 19 18 22 22 C 1.34124 * 108.59085 * 359.73283 * 19 18 16 23 23 C 1.50697 * 126.31648 * 180.25956 * 22 19 18 24 24 H 1.09006 * 109.47250 * 64.64746 * 1 2 3 25 25 H 1.08997 * 109.47308 * 184.64401 * 1 2 3 26 26 H 1.09000 * 109.47332 * 304.65107 * 1 2 3 27 27 H 1.09008 * 109.47370 * 239.99826 * 2 1 3 28 28 H 1.08998 * 109.47163 * 120.00240 * 2 1 3 29 29 H 0.97000 * 119.99794 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47438 * 84.50975 * 17 16 15 31 31 H 1.09008 * 109.47038 * 204.51108 * 17 16 15 32 32 H 1.09003 * 109.47578 * 324.50807 * 17 16 15 33 33 H 1.09002 * 109.47185 * 210.02823 * 20 19 18 34 34 H 1.09004 * 109.47297 * 330.03339 * 20 19 18 35 35 H 1.08996 * 109.47347 * 300.00274 * 21 20 19 36 36 H 1.09004 * 109.47193 * 59.99941 * 21 20 19 37 37 H 1.08998 * 109.47150 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47433 * 270.19355 * 23 22 19 39 39 H 1.08996 * 109.47121 * 30.19862 * 23 22 19 40 40 H 1.09003 * 109.47439 * 150.19746 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5995 1.9837 -0.8374 5 6 1.6504 2.1130 1.2921 6 1 1.6336 1.5459 2.2112 7 6 1.3208 3.4518 1.3021 8 7 0.8806 4.0125 2.4073 9 14 1.4998 4.4693 -0.2542 10 1 0.2021 4.5031 -0.9754 11 1 1.9040 5.8529 0.1027 12 1 2.5356 3.8606 -1.1272 13 6 3.5410 1.4446 -0.1344 14 8 4.2387 1.3771 0.8557 15 6 4.1583 1.5282 -1.4623 16 6 3.4808 1.5583 -2.7048 17 6 1.9874 1.5103 -2.9010 18 7 4.3759 1.6348 -3.6494 19 7 5.6492 1.6578 -3.0700 20 6 6.9183 1.7384 -3.7974 21 6 7.3054 3.2065 -3.9864 22 6 5.5134 1.5991 -1.7369 23 6 6.6301 1.6044 -0.7250 24 1 -0.3634 0.4401 -0.9287 25 1 -0.3634 -1.0242 0.0832 26 1 -0.3634 0.5843 0.8454 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.6484 4.9543 2.4141 30 1 1.5758 2.5150 -2.8050 31 1 1.7638 1.1193 -3.8936 32 1 1.5424 0.8618 -2.1463 33 1 7.6958 1.2279 -3.2293 34 1 6.8091 1.2632 -4.7723 35 1 6.5279 3.7172 -4.5545 36 1 7.4146 3.6819 -3.0115 37 1 8.2499 3.2665 -4.5272 38 1 6.9437 0.5800 -0.5245 39 1 7.4735 2.1724 -1.1176 40 1 6.2808 2.0648 0.1992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307998275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:20 Heat of formation + Delta-G solvation = 21.403408 kcal Electronic energy + Delta-G solvation = -21026.771063 eV Core-core repulsion = 18036.025646 eV Total energy + Delta-G solvation = -2990.745418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.18014 -38.02877 -35.12970 -34.31023 -32.07387 -31.90462 -30.62664 -28.21596 -27.55158 -26.83320 -24.15163 -23.27183 -21.62503 -19.99214 -18.98554 -18.44553 -17.02015 -16.36861 -15.38651 -15.01319 -14.48764 -14.13468 -13.89873 -13.66577 -13.44588 -13.30205 -13.13870 -12.93301 -12.72899 -12.40746 -12.27889 -12.17588 -11.79614 -11.71735 -11.54551 -11.37114 -11.07424 -10.96428 -10.83431 -10.37212 -10.20922 -9.73642 -9.51650 -9.04016 -8.90494 -8.73494 -8.20726 -8.10954 -6.05635 -4.02590 1.83254 2.49924 2.54042 3.25886 3.37188 3.41275 4.00110 4.40250 4.42469 4.74207 4.80217 4.89002 4.99607 5.14439 5.19252 5.36918 5.51766 5.56074 5.62658 5.65373 5.82952 5.92384 5.94925 5.97373 6.10346 6.13339 6.18223 6.22950 6.36902 6.58300 6.60739 6.80266 6.91625 7.09823 7.15215 7.19558 7.28423 7.72937 7.93133 8.50786 8.91386 9.04144 9.56120 11.07454 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.007445 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.724467 B = 3760.036308 C = 3947.863573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 C -0.029 4.029 4 H 0.062 0.938 5 C -0.486 4.486 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.852 3.148 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.255 1.255 13 C 0.422 3.578 14 O -0.469 6.469 15 C -0.306 4.306 16 C 0.123 3.877 17 C -0.095 4.095 18 N -0.312 5.312 19 N -0.368 5.368 20 C 0.128 3.872 21 C -0.172 4.172 22 C 0.135 3.865 23 C -0.096 4.096 24 H 0.042 0.958 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.263 0.737 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 -4.840 -13.032 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.049 4.049 4 H 0.080 0.920 5 C -0.524 4.524 6 H 0.097 0.903 7 C -0.127 4.127 8 N -0.532 5.532 9 Si 0.679 3.321 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.179 1.179 13 C 0.299 3.701 14 O -0.345 6.345 15 C -0.319 4.319 16 C -0.044 4.044 17 C -0.153 4.153 18 N -0.134 5.134 19 N -0.148 5.148 20 C 0.006 3.994 21 C -0.230 4.230 22 C 0.005 3.995 23 C -0.154 4.154 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 10.081 -4.626 -13.763 17.677 hybrid contribution 0.143 0.907 -0.157 0.932 sum 10.224 -3.719 -13.920 17.668 Atomic orbital electron populations 1.21691 0.95742 0.99869 1.02537 1.21321 0.96169 0.96323 0.99822 1.19899 0.89333 0.95518 1.00146 0.91994 1.20705 1.43903 0.94742 0.93047 0.90281 1.25019 0.94445 0.97580 0.95660 1.69884 1.44023 1.12341 1.26952 0.87215 0.79458 0.80492 0.84941 1.19795 1.21403 1.17910 1.22764 0.93414 0.69619 0.84283 1.90325 1.65881 1.38035 1.40224 1.21380 0.91455 1.21504 0.97518 1.22457 0.96354 0.95449 0.90189 1.20766 0.86955 1.04021 1.03569 1.76957 0.87210 1.27541 1.21656 1.48358 1.05935 1.56637 1.03867 1.21647 0.81257 0.98508 0.97956 1.22202 1.02272 0.95437 1.03043 1.21821 0.96572 0.96141 0.84948 1.20635 0.93685 1.03430 0.97691 0.93854 0.94447 0.90616 0.94224 0.92346 0.92686 0.90210 0.91053 0.87943 0.89007 0.88692 0.91542 0.91912 0.90553 0.89913 0.91645 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.76 37.15 0.36 -2.19 16 2 C -0.10 -1.96 4.45 -26.73 -0.12 -2.08 16 3 C -0.03 -0.68 0.83 -92.92 -0.08 -0.76 16 4 H 0.06 1.38 2.45 -51.93 -0.13 1.26 16 5 C -0.49 -13.54 7.25 -34.44 -0.25 -13.79 16 6 H 0.08 2.44 8.06 -52.48 -0.42 2.01 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 8 N -0.89 -27.33 13.96 55.43 0.77 -26.56 16 9 Si 0.85 21.24 26.49 -169.99 -4.50 16.73 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.25 -6.16 6.15 56.52 0.35 -5.81 16 13 C 0.42 9.86 5.61 -30.90 -0.17 9.68 16 14 O -0.47 -11.94 14.92 5.53 0.08 -11.86 16 15 C -0.31 -6.32 5.93 -105.15 -0.62 -6.95 16 16 C 0.12 2.34 7.25 -81.95 -0.59 1.75 16 17 C -0.10 -1.58 8.58 36.01 0.31 -1.27 16 18 N -0.31 -5.63 12.49 33.94 0.42 -5.21 16 19 N -0.37 -5.80 3.57 -56.53 -0.20 -6.00 16 20 C 0.13 1.33 6.74 -4.04 -0.03 1.30 16 21 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 22 C 0.14 2.38 7.02 -81.51 -0.57 1.81 16 23 C -0.10 -1.38 9.31 36.00 0.34 -1.05 16 24 H 0.04 0.71 7.84 -51.93 -0.41 0.30 16 25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.56 7.25 -51.93 -0.38 1.18 16 27 H 0.04 0.69 7.14 -51.92 -0.37 0.32 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 30 H 0.08 1.36 7.28 -51.93 -0.38 0.98 16 31 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.10 1.70 3.68 -51.93 -0.19 1.50 16 33 H 0.09 0.74 7.63 -51.93 -0.40 0.34 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.72 7.71 -51.93 -0.40 0.32 16 40 H 0.11 1.80 6.58 -51.93 -0.34 1.45 16 LS Contribution 319.32 15.07 4.81 4.81 Total: -1.00 -33.75 319.32 -5.74 -39.50 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.98 Total: 1.30 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -1.15 Total: -12.71 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: 1.00 Total: -37.77 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.50 Total: 16.73 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.75 -5.74 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307998275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.900 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds