Wall clock time and date at job start Mon Mar 30 2020 06:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47061 * 2 1 4 4 H 1.08999 * 109.47444 * 305.42366 * 3 2 1 5 5 C 1.50697 * 109.47147 * 65.43105 * 3 2 1 6 6 H 1.08004 * 120.00009 * 35.23654 * 5 3 2 7 7 C 1.37879 * 120.00012 * 214.96531 * 5 3 2 8 8 N 1.31518 * 120.00279 * 174.68292 * 7 5 3 9 9 Si 1.86796 * 119.99878 * 354.67603 * 7 5 3 10 10 H 1.48504 * 109.47119 * 94.27346 * 9 7 5 11 11 H 1.48499 * 109.47560 * 214.27459 * 9 7 5 12 12 H 1.48502 * 109.47204 * 334.27555 * 9 7 5 13 13 C 1.50707 * 109.46790 * 185.42672 * 3 2 1 14 14 O 1.21311 * 119.99768 * 271.91979 * 13 3 2 15 15 C 1.46673 * 119.99816 * 91.92576 * 13 3 2 16 16 C 1.41549 * 126.47638 * 357.29411 * 15 13 3 17 17 C 1.50700 * 126.00663 * 0.02562 * 16 15 13 18 18 N 1.30365 * 107.98289 * 180.02562 * 16 15 13 19 19 N 1.39910 * 109.00758 * 359.97438 * 18 16 15 20 20 C 1.46501 * 125.70399 * 179.97438 * 19 18 16 21 21 C 1.52999 * 109.47143 * 90.02914 * 20 19 18 22 22 C 1.34124 * 108.59085 * 359.73283 * 19 18 16 23 23 C 1.50697 * 126.31648 * 180.25956 * 22 19 18 24 24 H 1.09006 * 109.47250 * 64.64746 * 1 2 3 25 25 H 1.08997 * 109.47308 * 184.64401 * 1 2 3 26 26 H 1.09000 * 109.47332 * 304.65107 * 1 2 3 27 27 H 1.09008 * 109.47370 * 239.99826 * 2 1 3 28 28 H 1.08998 * 109.47163 * 120.00240 * 2 1 3 29 29 H 0.97000 * 119.99794 * 180.02562 * 8 7 5 30 30 H 1.08997 * 109.47438 * 84.50975 * 17 16 15 31 31 H 1.09008 * 109.47038 * 204.51108 * 17 16 15 32 32 H 1.09003 * 109.47578 * 324.50807 * 17 16 15 33 33 H 1.09002 * 109.47185 * 210.02823 * 20 19 18 34 34 H 1.09004 * 109.47297 * 330.03339 * 20 19 18 35 35 H 1.08996 * 109.47347 * 300.00274 * 21 20 19 36 36 H 1.09004 * 109.47193 * 59.99941 * 21 20 19 37 37 H 1.08998 * 109.47150 * 179.97438 * 21 20 19 38 38 H 1.08995 * 109.47433 * 270.19355 * 23 22 19 39 39 H 1.08996 * 109.47121 * 30.19862 * 23 22 19 40 40 H 1.09003 * 109.47439 * 150.19746 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5995 1.9837 -0.8374 5 6 1.6504 2.1130 1.2921 6 1 1.6336 1.5459 2.2112 7 6 1.3208 3.4518 1.3021 8 7 0.8806 4.0125 2.4073 9 14 1.4998 4.4693 -0.2542 10 1 0.2021 4.5031 -0.9754 11 1 1.9040 5.8529 0.1027 12 1 2.5356 3.8606 -1.1272 13 6 3.5410 1.4446 -0.1344 14 8 4.2387 1.3771 0.8557 15 6 4.1583 1.5282 -1.4623 16 6 3.4808 1.5583 -2.7048 17 6 1.9874 1.5103 -2.9010 18 7 4.3759 1.6348 -3.6494 19 7 5.6492 1.6578 -3.0700 20 6 6.9183 1.7384 -3.7974 21 6 7.3054 3.2065 -3.9864 22 6 5.5134 1.5991 -1.7369 23 6 6.6301 1.6044 -0.7250 24 1 -0.3634 0.4401 -0.9287 25 1 -0.3634 -1.0242 0.0832 26 1 -0.3634 0.5843 0.8454 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 0.6484 4.9543 2.4141 30 1 1.5758 2.5150 -2.8050 31 1 1.7638 1.1193 -3.8936 32 1 1.5424 0.8618 -2.1463 33 1 7.6958 1.2279 -3.2293 34 1 6.8091 1.2632 -4.7723 35 1 6.5279 3.7172 -4.5545 36 1 7.4146 3.6819 -3.0115 37 1 8.2499 3.2665 -4.5272 38 1 6.9437 0.5800 -0.5245 39 1 7.4735 2.1724 -1.1176 40 1 6.2808 2.0648 0.1992 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307998275.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:20 Heat of formation + Delta-G solvation = -0.677728 kcal Electronic energy + Delta-G solvation = -21027.728573 eV Core-core repulsion = 18036.025646 eV Total energy + Delta-G solvation = -2991.702928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.52506 -39.78965 -36.60225 -35.74463 -34.03648 -33.22469 -31.84484 -29.88018 -28.84804 -28.21575 -25.93527 -24.46246 -23.01299 -21.58997 -20.25974 -20.07843 -19.08734 -17.67697 -16.77200 -16.40500 -16.27348 -15.53703 -15.42239 -15.20573 -14.90753 -14.72613 -14.63369 -14.35204 -13.96707 -13.88058 -13.61628 -13.25706 -13.04693 -12.92374 -12.87821 -12.82398 -12.71349 -12.53125 -12.25937 -12.04510 -11.74535 -11.60327 -11.29464 -10.99533 -10.85461 -10.16788 -10.05831 -9.55089 -8.27974 -6.28657 0.41433 1.03225 1.26832 1.33386 1.41018 1.42844 2.31749 2.34231 3.01165 3.34889 3.54590 3.83824 3.95979 4.02625 4.07623 4.26217 4.31267 4.33672 4.52257 4.56818 4.58922 4.63431 4.67290 4.70438 4.76323 4.86164 4.94048 5.00153 5.06013 5.08673 5.16742 5.28468 5.35214 5.47385 5.56943 5.65726 5.78407 5.96275 6.30993 6.57883 6.76449 7.14319 7.32806 8.89436 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.007445 C = 0.007091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.724467 B = 3760.036308 C = 3947.863573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 C -0.032 4.032 4 H 0.078 0.922 5 C -0.483 4.483 6 H 0.029 0.971 7 C 0.016 3.984 8 N -0.946 5.946 9 Si 0.913 3.087 10 H -0.245 1.245 11 H -0.295 1.295 12 H -0.244 1.244 13 C 0.420 3.580 14 O -0.508 6.508 15 C -0.353 4.353 16 C 0.115 3.885 17 C -0.099 4.099 18 N -0.320 5.320 19 N -0.356 5.356 20 C 0.113 3.887 21 C -0.167 4.167 22 C 0.145 3.855 23 C -0.094 4.094 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.038 0.962 29 H 0.264 0.736 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.111 0.889 35 H 0.046 0.954 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.040 -5.307 -16.786 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.133 4.133 3 C -0.052 4.052 4 H 0.095 0.905 5 C -0.521 4.521 6 H 0.047 0.953 7 C -0.181 4.181 8 N -0.586 5.586 9 Si 0.737 3.263 10 H -0.169 1.169 11 H -0.222 1.222 12 H -0.167 1.167 13 C 0.301 3.699 14 O -0.387 6.387 15 C -0.365 4.365 16 C -0.052 4.052 17 C -0.157 4.157 18 N -0.141 5.141 19 N -0.135 5.135 20 C -0.005 4.005 21 C -0.224 4.224 22 C 0.012 3.988 23 C -0.152 4.152 24 H 0.084 0.916 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.142 0.858 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 11.673 -5.115 -17.573 21.708 hybrid contribution -0.218 0.967 1.002 1.410 sum 11.455 -4.149 -16.571 20.568 Atomic orbital electron populations 1.21643 0.94244 1.01412 1.02092 1.21299 0.97485 0.94234 1.00322 1.19946 0.90180 0.97216 0.97809 0.90467 1.20840 1.43109 0.94684 0.93445 0.95292 1.25835 0.94370 0.98829 0.99020 1.70041 1.46240 1.12752 1.29572 0.86239 0.80863 0.78036 0.81195 1.16940 1.22166 1.16716 1.22737 0.93147 0.68646 0.85380 1.90308 1.66383 1.40290 1.41703 1.21175 0.93371 1.25524 0.96438 1.22740 0.97527 0.95363 0.89548 1.20847 0.85646 1.03926 1.05307 1.76910 0.88018 1.27549 1.21672 1.48813 1.06841 1.54386 1.03470 1.22230 0.79592 0.99856 0.98856 1.22186 1.03350 0.94163 1.02747 1.22159 0.96360 0.93995 0.86295 1.20704 0.93837 1.04970 0.95737 0.91642 0.91414 0.94183 0.91129 0.94336 0.92673 0.90535 0.88062 0.88238 0.85832 0.87071 0.93446 0.92756 0.87042 0.88043 0.87703 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.82 9.76 71.98 0.70 -4.12 16 2 C -0.10 -3.79 4.45 30.59 0.14 -3.65 16 3 C -0.03 -1.51 0.83 -12.28 -0.01 -1.52 16 4 H 0.08 3.37 2.45 -2.39 -0.01 3.37 16 5 C -0.48 -28.17 7.25 25.60 0.19 -27.99 16 6 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 7 C 0.02 0.98 5.47 84.65 0.46 1.44 16 8 N -0.95 -60.45 13.96 21.45 0.30 -60.15 16 9 Si 0.91 44.31 26.49 68.60 1.82 46.13 16 10 H -0.25 -10.79 7.11 99.48 0.71 -10.09 16 11 H -0.29 -14.60 7.11 99.48 0.71 -13.89 16 12 H -0.24 -11.28 6.15 99.48 0.61 -10.67 16 13 C 0.42 19.83 5.61 27.89 0.16 19.99 16 14 O -0.51 -26.81 14.92 -3.12 -0.05 -26.86 16 15 C -0.35 -14.12 5.93 -20.21 -0.12 -14.24 16 16 C 0.12 4.12 7.25 43.59 0.32 4.44 16 17 C -0.10 -3.02 8.58 71.24 0.61 -2.40 16 18 N -0.32 -10.57 12.49 -46.55 -0.58 -11.16 16 19 N -0.36 -10.03 3.57 -332.75 -1.19 -11.22 16 20 C 0.11 1.86 6.74 86.38 0.58 2.44 16 21 C -0.17 -2.46 10.24 71.98 0.74 -1.72 16 22 C 0.15 4.78 7.02 42.26 0.30 5.08 16 23 C -0.09 -2.50 9.31 71.24 0.66 -1.84 16 24 H 0.06 2.00 7.84 -2.38 -0.02 1.98 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.04 1.68 7.25 -2.39 -0.02 1.66 16 27 H 0.07 2.36 7.14 -2.38 -0.02 2.34 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 30 H 0.08 2.37 7.28 -2.39 -0.02 2.36 16 31 H 0.10 2.41 8.14 -2.38 -0.02 2.40 16 32 H 0.10 3.03 3.68 -2.39 -0.01 3.02 16 33 H 0.12 1.30 7.63 -2.39 -0.02 1.28 16 34 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 35 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.10 1.90 7.71 -2.39 -0.02 1.88 16 40 H 0.07 2.54 6.58 -2.39 -0.02 2.52 16 Total: -1.00 -78.19 319.32 5.96 -72.23 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.94 Total: 15.13 kcal Atomic # 6 Polarization: -28.82 SS G_CDS: 4.72 Total: -24.10 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.47 Total: -82.53 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.82 Total: 46.13 kcal Total: -78.19 5.96 -72.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307998275.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.552 kcal (2) G-P(sol) polarization free energy of solvation -78.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds