Wall clock time and date at job start Mon Mar 30 2020 07:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.81967 * 300.56378 * 9 7 2 11 11 C 1.54413 * 109.83522 * 179.57143 * 9 7 2 12 12 C 1.55378 * 102.28883 * 219.17071 * 11 9 7 13 13 C 1.54567 * 100.89303 * 33.73539 * 12 11 9 14 14 C 1.52538 * 109.64924 * 83.08903 * 13 12 11 15 15 C 1.53137 * 109.50806 * 180.21827 * 14 13 12 16 16 C 1.52702 * 109.42217 * 301.25051 * 15 14 13 17 17 C 1.53995 * 109.77122 * 180.79783 * 16 15 14 18 18 C 1.54961 * 104.11152 * 95.65587 * 17 16 15 19 19 C 1.54917 * 102.77389 * 37.77199 * 18 17 16 20 20 C 1.53608 * 109.95532 * 298.09603 * 16 15 14 21 21 C 1.52679 * 110.37751 * 59.63165 * 16 15 14 22 22 C 1.52515 * 109.70510 * 204.87228 * 13 12 11 23 23 O 1.43183 * 105.64084 * 324.02022 * 13 12 11 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09002 * 110.84359 * 337.36686 * 11 9 7 26 26 H 1.08998 * 110.84343 * 100.96462 * 11 9 7 27 27 H 1.09001 * 111.13249 * 275.82853 * 12 11 9 28 28 H 1.08995 * 111.17182 * 151.66006 * 12 11 9 29 29 H 1.09006 * 109.46509 * 300.22446 * 14 13 12 30 30 H 1.08997 * 109.46746 * 60.20574 * 14 13 12 31 31 H 1.09002 * 109.47403 * 181.27493 * 15 14 13 32 32 H 1.08994 * 109.48978 * 61.24879 * 15 14 13 33 33 H 1.08997 * 110.50503 * 214.31449 * 17 16 15 34 34 H 1.09001 * 110.50503 * 337.00132 * 17 16 15 35 35 H 1.09001 * 110.75217 * 279.45211 * 18 17 16 36 36 H 1.08998 * 110.75312 * 156.08952 * 18 17 16 37 37 H 1.09006 * 110.48068 * 203.53719 * 19 18 17 38 38 H 1.09003 * 110.48702 * 80.90708 * 19 18 17 39 39 H 1.09000 * 110.04971 * 0.22297 * 20 16 15 40 40 H 1.08995 * 110.05283 * 121.69689 * 20 16 15 41 41 H 1.08994 * 109.46838 * 180.47901 * 21 16 15 42 42 H 1.09001 * 109.47007 * 60.48289 * 21 16 15 43 43 H 1.09000 * 109.45001 * 299.94390 * 22 13 12 44 44 H 1.09000 * 109.45074 * 59.87346 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6144 -2.5584 0.8833 11 6 2.2471 -3.6791 -0.0097 12 6 1.5552 -4.6876 -0.9680 13 6 0.8723 -3.7228 -1.9639 14 6 1.8758 -3.2886 -3.0274 15 6 1.1975 -2.3288 -4.0091 16 6 0.0014 -3.0245 -4.6549 17 6 -0.6751 -2.0727 -5.6589 18 6 -0.0535 -2.4601 -7.0245 19 6 0.0700 -4.0008 -6.9199 20 6 0.4748 -4.2496 -5.4515 21 6 -1.0045 -3.4516 -3.5888 22 6 -0.3289 -4.4105 -2.6046 23 8 0.4503 -2.5984 -1.1843 24 1 -0.4850 -0.8401 -0.0004 25 1 3.2133 -3.3676 -0.4065 26 1 2.3553 -4.1040 0.9882 27 1 0.8186 -5.2914 -0.4379 28 1 2.2878 -5.3184 -1.4714 29 1 2.7165 -2.7854 -2.5497 30 1 2.2359 -4.1649 -3.5665 31 1 1.9087 -2.0366 -4.7817 32 1 0.8572 -1.4421 -3.4743 33 1 -1.7531 -2.2336 -5.6707 34 1 -0.4457 -1.0352 -5.4157 35 1 0.9277 -2.0014 -7.1463 36 1 -0.7161 -2.1806 -7.8436 37 1 0.8421 -4.3683 -7.5960 38 1 -0.8865 -4.4759 -7.1377 39 1 1.5574 -4.3501 -5.3741 40 1 -0.0122 -5.1499 -5.0770 41 1 -1.8470 -3.9535 -4.0646 42 1 -1.3612 -2.5722 -3.0526 43 1 0.0042 -5.3016 -3.1366 44 1 -1.0401 -4.6955 -1.8293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310078122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:06 Heat of formation + Delta-G solvation = -86.894500 kcal Electronic energy + Delta-G solvation = -22057.601813 eV Core-core repulsion = 19165.700589 eV Total energy + Delta-G solvation = -2891.901224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.14635 -38.03179 -34.22177 -32.33598 -31.13659 -30.37529 -29.32725 -28.45816 -26.01860 -23.77682 -22.44391 -22.16184 -20.50946 -20.45501 -19.40781 -17.47991 -16.91160 -15.52840 -15.44869 -15.23520 -14.14009 -13.72650 -13.67352 -13.46856 -13.24818 -13.04893 -12.94267 -12.46647 -12.15948 -11.79696 -11.47426 -11.32148 -11.08020 -10.91133 -10.81288 -10.73085 -10.68474 -10.57244 -10.42755 -10.36183 -10.27754 -10.11449 -9.97308 -9.68467 -9.43776 -9.28812 -8.88470 -8.35983 -7.74048 -6.25523 -4.02660 3.46747 3.48708 3.67152 4.59064 4.71014 4.84293 4.89807 4.95252 5.30346 5.36425 5.48998 5.55754 5.58667 5.62554 5.66128 5.70841 5.80431 5.85415 5.89733 5.95317 5.99953 6.05670 6.10673 6.15482 6.15758 6.20319 6.28895 6.37518 6.40245 6.47104 6.48903 6.51816 6.58688 6.66934 6.69769 6.82053 6.85810 6.92214 7.08656 7.16090 7.51842 8.21809 8.38350 8.72684 8.98484 9.79988 11.15796 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.007304 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.560114 B = 3832.706347 C = 4584.334160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.034 3.966 3 Si 1.062 2.938 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.614 4.614 8 H 0.048 0.952 9 C 0.190 3.810 10 H 0.026 0.974 11 C -0.136 4.136 12 C -0.152 4.152 13 C 0.115 3.885 14 C -0.119 4.119 15 C -0.096 4.096 16 C -0.055 4.055 17 C -0.116 4.116 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.116 4.116 21 C -0.099 4.099 22 C -0.107 4.107 23 O -0.362 6.362 24 H 0.280 0.720 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.358 -8.807 -10.666 13.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.174 4.174 3 Si 0.891 3.109 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.652 4.652 8 H 0.066 0.934 9 C 0.135 3.865 10 H 0.044 0.956 11 C -0.174 4.174 12 C -0.190 4.190 13 C 0.075 3.925 14 C -0.156 4.156 15 C -0.133 4.133 16 C -0.055 4.055 17 C -0.153 4.153 18 C -0.161 4.161 19 C -0.161 4.161 20 C -0.154 4.154 21 C -0.137 4.137 22 C -0.145 4.145 23 O -0.282 6.282 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.012 -7.031 -10.701 12.804 hybrid contribution 0.533 -1.869 0.119 1.948 sum 0.522 -8.900 -10.581 13.837 Atomic orbital electron populations 1.70657 1.06850 1.31692 1.43581 1.25694 0.96563 1.02249 0.92860 0.83666 0.75037 0.75803 0.76407 1.20813 1.21576 1.21517 1.22173 0.93621 0.91737 1.57667 0.93370 1.20422 0.88124 0.93397 0.84598 0.95643 1.23076 1.00300 0.96152 0.97880 1.23262 0.99536 0.98018 0.98157 1.21555 0.92445 0.87137 0.91401 1.21803 0.98741 0.98464 0.96635 1.21429 0.95514 0.99273 0.97087 1.20905 0.95762 0.94346 0.94476 1.22445 0.99337 0.99553 0.94014 1.22494 1.00579 0.95731 0.97337 1.22372 1.00599 0.96245 0.96921 1.22317 1.00875 0.98025 0.94148 1.21474 0.96489 0.99880 0.95834 1.21587 0.97283 0.97491 0.98114 1.88592 1.58699 1.45647 1.35299 0.90878 0.91610 0.92690 0.91886 0.91876 0.91382 0.93111 0.93320 0.90458 0.91951 0.91509 0.91754 0.92259 0.92393 0.92182 0.91811 0.91999 0.93181 0.90864 0.92134 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.39 13.55 55.43 0.75 -26.63 16 2 C 0.03 1.00 5.41 -17.82 -0.10 0.90 16 3 Si 1.06 25.53 29.90 -169.99 -5.08 20.44 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.61 -17.37 8.75 -34.44 -0.30 -17.67 16 8 H 0.05 1.35 7.52 -52.48 -0.39 0.96 16 9 C 0.19 4.86 2.95 -27.14 -0.08 4.78 16 10 H 0.03 0.71 7.99 -51.93 -0.42 0.30 16 11 C -0.14 -2.87 6.14 -24.73 -0.15 -3.02 16 12 C -0.15 -2.75 6.00 -24.65 -0.15 -2.90 16 13 C 0.12 2.24 0.67 -90.28 -0.06 2.18 16 14 C -0.12 -2.20 4.58 -26.90 -0.12 -2.32 16 15 C -0.10 -1.72 4.31 -26.81 -0.12 -1.84 16 16 C -0.05 -0.84 0.62 -153.99 -0.09 -0.93 16 17 C -0.12 -1.64 5.89 -25.18 -0.15 -1.79 16 18 C -0.12 -1.48 6.91 -24.68 -0.17 -1.65 16 19 C -0.12 -1.41 6.83 -25.02 -0.17 -1.58 16 20 C -0.12 -1.52 5.08 -25.72 -0.13 -1.65 16 21 C -0.10 -1.64 4.32 -26.83 -0.12 -1.76 16 22 C -0.11 -1.80 4.68 -26.92 -0.13 -1.93 16 23 O -0.36 -8.93 8.34 -35.23 -0.29 -9.22 16 24 H 0.28 8.69 6.54 -40.82 -0.27 8.43 16 25 H 0.07 1.40 7.31 -51.93 -0.38 1.02 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.08 8.03 -51.93 -0.42 0.66 16 28 H 0.06 1.00 8.00 -51.93 -0.42 0.59 16 29 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16 30 H 0.05 0.81 6.61 -51.93 -0.34 0.47 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.71 7.87 -51.93 -0.41 1.30 16 33 H 0.06 0.84 7.84 -51.93 -0.41 0.44 16 34 H 0.07 1.01 7.83 -51.93 -0.41 0.61 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.85 6.43 -51.93 -0.33 0.51 16 40 H 0.06 0.78 6.45 -51.93 -0.34 0.45 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 1.44 7.88 -51.93 -0.41 1.03 16 43 H 0.06 0.89 6.63 -51.93 -0.34 0.54 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 321.79 15.07 4.85 4.85 Total: -1.00 -29.80 321.79 -9.65 -39.46 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.84 Total: 2.28 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: -2.03 Total: -31.18 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.75 Total: -26.63 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -0.29 Total: -9.22 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.80 -9.65 -39.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310078122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.438 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds