Wall clock time and date at job start Mon Mar 30 2020 07:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.08999 * 109.81967 * 300.56378 * 9 7 2 11 11 C 1.54413 * 109.83522 * 179.57143 * 9 7 2 12 12 C 1.55378 * 102.28883 * 219.17071 * 11 9 7 13 13 C 1.54567 * 100.89303 * 33.73539 * 12 11 9 14 14 C 1.52538 * 109.64924 * 83.08903 * 13 12 11 15 15 C 1.53137 * 109.50806 * 180.21827 * 14 13 12 16 16 C 1.52702 * 109.42217 * 301.25051 * 15 14 13 17 17 C 1.53995 * 109.77122 * 180.79783 * 16 15 14 18 18 C 1.54961 * 104.11152 * 95.65587 * 17 16 15 19 19 C 1.54917 * 102.77389 * 37.77199 * 18 17 16 20 20 C 1.53608 * 109.95532 * 298.09603 * 16 15 14 21 21 C 1.52679 * 110.37751 * 59.63165 * 16 15 14 22 22 C 1.52515 * 109.70510 * 204.87228 * 13 12 11 23 23 O 1.43183 * 105.64084 * 324.02022 * 13 12 11 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09002 * 110.84359 * 337.36686 * 11 9 7 26 26 H 1.08998 * 110.84343 * 100.96462 * 11 9 7 27 27 H 1.09001 * 111.13249 * 275.82853 * 12 11 9 28 28 H 1.08995 * 111.17182 * 151.66006 * 12 11 9 29 29 H 1.09006 * 109.46509 * 300.22446 * 14 13 12 30 30 H 1.08997 * 109.46746 * 60.20574 * 14 13 12 31 31 H 1.09002 * 109.47403 * 181.27493 * 15 14 13 32 32 H 1.08994 * 109.48978 * 61.24879 * 15 14 13 33 33 H 1.08997 * 110.50503 * 214.31449 * 17 16 15 34 34 H 1.09001 * 110.50503 * 337.00132 * 17 16 15 35 35 H 1.09001 * 110.75217 * 279.45211 * 18 17 16 36 36 H 1.08998 * 110.75312 * 156.08952 * 18 17 16 37 37 H 1.09006 * 110.48068 * 203.53719 * 19 18 17 38 38 H 1.09003 * 110.48702 * 80.90708 * 19 18 17 39 39 H 1.09000 * 110.04971 * 0.22297 * 20 16 15 40 40 H 1.08995 * 110.05283 * 121.69689 * 20 16 15 41 41 H 1.08994 * 109.46838 * 180.47901 * 21 16 15 42 42 H 1.09001 * 109.47007 * 60.48289 * 21 16 15 43 43 H 1.09000 * 109.45001 * 299.94390 * 22 13 12 44 44 H 1.09000 * 109.45074 * 59.87346 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6144 -2.5584 0.8833 11 6 2.2471 -3.6791 -0.0097 12 6 1.5552 -4.6876 -0.9680 13 6 0.8723 -3.7228 -1.9639 14 6 1.8758 -3.2886 -3.0274 15 6 1.1975 -2.3288 -4.0091 16 6 0.0014 -3.0245 -4.6549 17 6 -0.6751 -2.0727 -5.6589 18 6 -0.0535 -2.4601 -7.0245 19 6 0.0700 -4.0008 -6.9199 20 6 0.4748 -4.2496 -5.4515 21 6 -1.0045 -3.4516 -3.5888 22 6 -0.3289 -4.4105 -2.6046 23 8 0.4503 -2.5984 -1.1843 24 1 -0.4850 -0.8401 -0.0004 25 1 3.2133 -3.3676 -0.4065 26 1 2.3553 -4.1040 0.9882 27 1 0.8186 -5.2914 -0.4379 28 1 2.2878 -5.3184 -1.4714 29 1 2.7165 -2.7854 -2.5497 30 1 2.2359 -4.1649 -3.5665 31 1 1.9087 -2.0366 -4.7817 32 1 0.8572 -1.4421 -3.4743 33 1 -1.7531 -2.2336 -5.6707 34 1 -0.4457 -1.0352 -5.4157 35 1 0.9277 -2.0014 -7.1463 36 1 -0.7161 -2.1806 -7.8436 37 1 0.8421 -4.3683 -7.5960 38 1 -0.8865 -4.4759 -7.1377 39 1 1.5574 -4.3501 -5.3741 40 1 -0.0122 -5.1499 -5.0770 41 1 -1.8470 -3.9535 -4.0646 42 1 -1.3612 -2.5722 -3.0526 43 1 0.0042 -5.3016 -3.1366 44 1 -1.0401 -4.6955 -1.8293 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310078122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:05 Heat of formation + Delta-G solvation = -102.421856 kcal Electronic energy + Delta-G solvation = -22058.275130 eV Core-core repulsion = 19165.700589 eV Total energy + Delta-G solvation = -2892.574541 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.57659 -39.51228 -35.77608 -34.28664 -32.85646 -31.80763 -30.80378 -29.58733 -27.74666 -25.46274 -23.89710 -23.72893 -22.20581 -21.58365 -20.82336 -19.08437 -18.80359 -17.05718 -16.75138 -16.53293 -15.72978 -15.52071 -15.29434 -15.07591 -14.79932 -14.36343 -14.19565 -14.01676 -13.68807 -13.47569 -12.91653 -12.79627 -12.64211 -12.50481 -12.40981 -12.14161 -12.01673 -11.94308 -11.87965 -11.79286 -11.68076 -11.55864 -11.30862 -11.16234 -10.99399 -10.72922 -10.65479 -10.54211 -9.70269 -8.57839 -6.34877 1.47857 1.56624 1.75137 2.56289 3.09446 3.42788 3.68712 3.73098 3.75175 3.88073 4.01172 4.09487 4.23001 4.33614 4.41298 4.42459 4.53820 4.60227 4.64396 4.67023 4.68510 4.69245 4.84987 4.87259 4.88982 4.95383 5.02162 5.04449 5.04989 5.09208 5.11901 5.19675 5.26735 5.34128 5.36370 5.46668 5.49419 5.55089 5.59656 5.68397 5.74097 6.02374 6.15673 6.62843 6.88186 7.58016 8.82249 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.007304 C = 0.006106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.560114 B = 3832.706347 C = 4584.334160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.019 4.019 3 Si 1.108 2.892 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.275 1.275 7 C -0.625 4.625 8 H 0.045 0.955 9 C 0.183 3.817 10 H -0.010 1.010 11 C -0.131 4.131 12 C -0.139 4.139 13 C 0.098 3.902 14 C -0.114 4.114 15 C -0.090 4.090 16 C -0.052 4.052 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.097 4.097 22 C -0.102 4.102 23 O -0.390 6.390 24 H 0.263 0.737 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.036 0.964 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.019 0.981 33 H 0.067 0.933 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.098 0.902 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 -11.124 -12.842 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.930 3.070 4 H -0.210 1.210 5 H -0.192 1.192 6 H -0.201 1.201 7 C -0.662 4.662 8 H 0.063 0.937 9 C 0.127 3.873 10 H 0.008 0.992 11 C -0.169 4.169 12 C -0.177 4.177 13 C 0.058 3.942 14 C -0.151 4.151 15 C -0.128 4.128 16 C -0.052 4.052 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.135 4.135 22 C -0.140 4.140 23 O -0.310 6.310 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.116 0.884 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.017 -9.373 -12.876 15.959 hybrid contribution 0.200 -1.159 0.808 1.427 sum 1.217 -10.532 -12.067 16.063 Atomic orbital electron populations 1.70786 1.07901 1.30621 1.46438 1.27154 0.96622 1.06197 0.92018 0.83086 0.74305 0.71839 0.77788 1.21008 1.19188 1.20065 1.22550 0.93686 0.93324 1.56651 0.93667 1.20282 0.88427 0.94505 0.84051 0.99213 1.22962 0.98935 0.95308 0.99688 1.23253 1.00075 0.97318 0.97012 1.21995 0.94216 0.86269 0.91685 1.21763 0.97370 0.99510 0.96472 1.21336 0.97040 0.97458 0.96924 1.20877 0.94172 0.95743 0.94440 1.22456 0.99829 0.98019 0.95498 1.22483 1.00539 0.96627 0.96048 1.22358 1.01890 0.95303 0.95899 1.22276 1.01108 0.96674 0.94856 1.21446 0.97748 0.98266 0.95995 1.21594 0.95968 0.98302 0.98097 1.88536 1.58870 1.48327 1.35294 0.92694 0.92055 0.91335 0.90660 0.88384 0.94482 0.89379 0.92192 0.96160 0.91434 0.93967 0.92015 0.90631 0.90584 0.90928 0.91484 0.90659 0.90623 0.95570 0.88409 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.56 13.55 21.45 0.29 -59.27 16 2 C -0.02 -1.12 5.41 84.65 0.46 -0.66 16 3 Si 1.11 52.68 29.90 68.60 2.05 54.73 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 7 C -0.62 -36.72 8.75 25.60 0.22 -36.50 16 8 H 0.05 2.61 7.52 -2.91 -0.02 2.59 16 9 C 0.18 9.79 2.95 30.33 0.09 9.88 16 10 H -0.01 -0.57 7.99 -2.39 -0.02 -0.59 16 11 C -0.13 -5.49 6.14 31.89 0.20 -5.29 16 12 C -0.14 -4.73 6.00 31.95 0.19 -4.53 16 13 C 0.10 3.75 0.67 -10.57 -0.01 3.75 16 14 C -0.11 -4.10 4.58 30.49 0.14 -3.96 16 15 C -0.09 -3.29 4.31 30.54 0.13 -3.16 16 16 C -0.05 -1.54 0.62 -51.85 -0.03 -1.57 16 17 C -0.12 -3.34 5.89 31.60 0.19 -3.15 16 18 C -0.12 -2.54 6.91 31.92 0.22 -2.32 16 19 C -0.12 -2.16 6.83 31.70 0.22 -1.94 16 20 C -0.11 -2.48 5.08 31.25 0.16 -2.32 16 21 C -0.10 -3.15 4.32 30.53 0.13 -3.02 16 22 C -0.10 -3.25 4.68 30.47 0.14 -3.10 16 23 O -0.39 -20.14 8.34 -148.98 -1.24 -21.38 16 24 H 0.26 17.51 6.54 -92.71 -0.61 16.90 16 25 H 0.06 2.59 7.31 -2.39 -0.02 2.58 16 26 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.07 2.38 8.03 -2.39 -0.02 2.36 16 28 H 0.10 2.68 8.00 -2.39 -0.02 2.66 16 29 H 0.04 1.54 7.48 -2.38 -0.02 1.53 16 30 H 0.09 2.52 6.61 -2.39 -0.02 2.50 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.02 0.94 7.87 -2.39 -0.02 0.92 16 33 H 0.07 1.78 7.84 -2.39 -0.02 1.76 16 34 H 0.04 1.34 7.83 -2.39 -0.02 1.32 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 1.46 6.43 -2.39 -0.02 1.45 16 40 H 0.07 1.50 6.45 -2.39 -0.02 1.49 16 41 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.03 1.07 7.88 -2.39 -0.02 1.05 16 43 H 0.10 2.41 6.63 -2.39 -0.02 2.39 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.62 321.79 4.65 -64.97 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 1.11 Total: 18.85 kcal Atomic # 6 Polarization: -60.35 SS G_CDS: 2.45 Total: -57.90 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: 0.29 Total: -59.27 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.24 Total: -21.38 kcal Atomic # 14 Polarization: 52.68 SS G_CDS: 2.05 Total: 54.73 kcal Total: -69.62 4.65 -64.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310078122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.454 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds