Wall clock time and date at job start Mon Mar 30 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47447 * 2 1 4 4 N 1.46506 * 109.47270 * 119.99961 * 2 1 3 5 5 C 1.35043 * 126.39432 * 300.02691 * 4 2 1 6 6 N 1.30499 * 108.69858 * 179.97438 * 5 4 2 7 7 C 1.34129 * 109.25449 * 359.97438 * 6 5 4 8 8 C 1.34671 * 108.02244 * 359.73194 * 7 6 5 9 9 C 1.50696 * 126.59234 * 180.28305 * 8 7 6 10 10 H 1.09001 * 110.27619 * 324.46542 * 9 8 7 11 11 C 1.54945 * 110.31219 * 86.55429 * 9 8 7 12 12 C 1.55407 * 100.89678 * 155.28750 * 11 9 8 13 13 C 1.54389 * 102.30904 * 325.99488 * 12 11 9 14 14 C 1.52997 * 109.90696 * 140.84165 * 13 12 11 15 15 C 1.50697 * 109.82864 * 261.77143 * 13 12 11 16 16 H 1.08006 * 120.00477 * 359.58343 * 15 13 12 17 17 C 1.37879 * 120.00115 * 179.58679 * 15 13 12 18 18 N 1.31514 * 119.99816 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00109 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47097 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46901 * 120.00054 * 19 17 15 22 22 H 1.48502 * 109.47029 * 239.99973 * 19 17 15 23 23 O 1.43239 * 107.58836 * 21.27992 * 13 12 11 24 24 H 1.09001 * 109.47185 * 299.99959 * 1 2 3 25 25 H 1.09002 * 109.46875 * 60.00479 * 1 2 3 26 26 H 1.09006 * 109.46766 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47429 * 239.99586 * 2 1 3 28 28 H 1.08990 * 109.47552 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46958 * 300.00113 * 3 2 1 30 30 H 1.09001 * 109.46895 * 59.99863 * 3 2 1 31 31 H 1.08001 * 125.65034 * 359.96055 * 5 4 2 32 32 H 1.08004 * 125.99036 * 180.02562 * 7 6 5 33 33 H 1.09003 * 111.12662 * 273.28349 * 11 9 8 34 34 H 1.09003 * 111.12100 * 37.43802 * 11 9 8 35 35 H 1.08998 * 110.88751 * 207.75709 * 12 11 9 36 36 H 1.08997 * 110.93764 * 84.25239 * 12 11 9 37 37 H 1.08996 * 109.46912 * 300.36441 * 14 13 12 38 38 H 1.08994 * 109.47365 * 60.36685 * 14 13 12 39 39 H 1.09000 * 109.47120 * 180.36639 * 14 13 12 40 40 H 0.97002 * 120.00048 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7727 -0.3439 2.4780 6 7 2.3738 -1.1947 3.2641 7 6 3.0178 -2.1059 2.5198 8 6 2.8028 -1.8120 1.2232 9 6 3.3282 -2.5697 0.0313 10 1 4.3268 -2.9545 0.2386 11 6 2.3694 -3.7310 -0.3331 12 6 2.6977 -3.9212 -1.8402 13 6 3.0065 -2.4782 -2.2943 14 6 4.1793 -2.4810 -3.2768 15 6 1.7905 -1.8780 -2.9518 16 1 0.8859 -2.4602 -3.0481 17 6 1.8328 -0.5857 -3.4304 18 7 2.9342 0.1234 -3.3128 19 14 0.3257 0.1581 -4.2460 20 1 -0.7751 -0.8385 -4.2543 21 1 -0.1021 1.3627 -3.4905 22 1 0.6567 0.5410 -5.6421 23 8 3.3514 -1.7218 -1.1279 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1774 0.4980 2.7994 32 1 3.6020 -2.9334 2.8946 33 1 2.6049 -4.6290 0.2382 34 1 1.3285 -3.4399 -0.1922 35 1 1.8382 -4.3215 -2.3777 36 1 3.5684 -4.5636 -1.9711 37 1 5.0580 -2.9068 -2.7924 38 1 3.9202 -3.0793 -4.1503 39 1 4.3953 -1.4588 -3.5877 40 1 2.9641 1.0324 -3.6499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310106210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:34 Heat of formation + Delta-G solvation = 9.118773 kcal Electronic energy + Delta-G solvation = -22041.919035 eV Core-core repulsion = 19050.640916 eV Total energy + Delta-G solvation = -2991.278119 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.57497 -38.43678 -35.24950 -33.27922 -31.16394 -30.96472 -29.91408 -28.23807 -26.78059 -25.44570 -24.41953 -22.30665 -21.30669 -20.38271 -19.66763 -18.70312 -16.93230 -16.12379 -15.28609 -14.72920 -14.63616 -14.23414 -13.99633 -13.49218 -13.36226 -12.97515 -12.79732 -12.63680 -12.40737 -11.83804 -11.79672 -11.56062 -11.38325 -11.03844 -10.98835 -10.85955 -10.76633 -10.69262 -10.53374 -10.44240 -9.99516 -9.54853 -9.40445 -9.23269 -8.91256 -8.64296 -8.07259 -7.66818 -6.12657 -4.29391 2.66704 3.12548 3.24085 3.27259 3.50251 3.67568 4.24891 4.77156 5.17101 5.23790 5.30633 5.36527 5.47309 5.56880 5.65482 5.76975 5.88326 5.95973 6.03090 6.05922 6.17469 6.23346 6.27335 6.35378 6.45171 6.48268 6.66599 6.70730 6.73843 6.83252 6.89922 7.05921 7.20844 7.26794 7.42786 7.63079 7.90063 7.96434 8.22769 8.42725 8.63087 8.85569 9.40405 10.86762 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.010381 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.744937 B = 2696.645010 C = 3580.023827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.086 3.914 3 C -0.143 4.143 4 N -0.420 5.420 5 C 0.159 3.841 6 N -0.503 5.503 7 C -0.049 4.049 8 C 0.004 3.996 9 C 0.144 3.856 10 H 0.071 0.929 11 C -0.136 4.136 12 C -0.143 4.143 13 C 0.225 3.775 14 C -0.140 4.140 15 C -0.531 4.531 16 H 0.060 0.940 17 C 0.084 3.916 18 N -0.853 5.853 19 Si 0.871 3.129 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.282 1.282 23 O -0.348 6.348 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.189 0.811 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.041 0.959 31 H 0.192 0.808 32 H 0.161 0.839 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.054 0.946 37 H 0.013 0.987 38 H 0.037 0.963 39 H 0.091 0.909 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.689 -1.685 4.156 4.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.014 4.014 3 C -0.200 4.200 4 N -0.100 5.100 5 C -0.123 4.123 6 N -0.221 5.221 7 C -0.198 4.198 8 C -0.114 4.114 9 C 0.084 3.916 10 H 0.089 0.911 11 C -0.174 4.174 12 C -0.181 4.181 13 C 0.188 3.812 14 C -0.198 4.198 15 C -0.569 4.569 16 H 0.078 0.922 17 C -0.122 4.122 18 N -0.490 5.490 19 Si 0.698 3.302 20 H -0.196 1.196 21 H -0.206 1.206 22 H -0.208 1.208 23 O -0.268 6.268 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.205 0.795 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.208 0.792 32 H 0.178 0.822 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.109 0.891 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.634 -1.157 4.819 5.219 hybrid contribution -0.971 0.369 -1.251 1.626 sum -2.605 -0.787 3.568 4.488 Atomic orbital electron populations 1.22083 0.95121 1.02314 1.01598 1.22574 0.93980 0.94891 0.89991 1.21935 1.02192 0.94861 1.01060 1.45588 1.36053 1.20707 1.07680 1.24567 1.05201 1.02358 0.80214 1.70178 1.12941 1.05344 1.33687 1.21808 1.06871 1.02257 0.88814 1.21456 1.00698 0.92221 0.96992 1.21103 0.96376 0.89206 0.84943 0.91109 1.23141 1.00049 0.97431 0.96821 1.23242 1.00654 0.99704 0.94452 1.19720 0.93312 0.85159 0.82991 1.21985 0.95874 1.03864 0.98081 1.21285 0.97994 0.98976 1.38596 0.92171 1.24954 0.95453 0.97120 0.94642 1.69975 1.25466 1.09562 1.43954 0.86881 0.83948 0.79578 0.79780 1.19557 1.20586 1.20763 1.88682 1.89927 1.34089 1.14060 0.93428 0.91166 0.92237 0.79479 0.91892 0.91198 0.93984 0.79152 0.82174 0.91603 0.91212 0.91116 0.92715 0.96824 0.94398 0.89070 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.24 37.16 0.34 -2.31 16 2 C 0.09 1.68 3.35 -67.93 -0.23 1.46 16 3 C -0.14 -2.58 9.24 37.16 0.34 -2.24 16 4 N -0.42 -8.09 2.62 -106.92 -0.28 -8.37 16 5 C 0.16 2.85 11.55 -90.38 -1.04 1.80 16 6 N -0.50 -9.67 11.25 -14.66 -0.16 -9.84 16 7 C -0.05 -0.91 11.79 -17.81 -0.21 -1.12 16 8 C 0.00 0.08 6.10 -81.60 -0.50 -0.41 16 9 C 0.14 2.81 3.90 -26.86 -0.10 2.70 16 10 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 11 C -0.14 -2.44 6.57 -24.43 -0.16 -2.60 16 12 C -0.14 -2.72 6.08 -24.73 -0.15 -2.87 16 13 C 0.23 5.04 0.82 -91.05 -0.07 4.97 16 14 C -0.14 -3.14 8.52 37.16 0.32 -2.83 16 15 C -0.53 -12.84 7.34 -34.44 -0.25 -13.10 16 16 H 0.06 1.48 7.48 -52.48 -0.39 1.08 16 17 C 0.08 2.04 4.27 -17.82 -0.08 1.96 16 18 N -0.85 -21.39 10.89 55.43 0.60 -20.78 16 19 Si 0.87 19.06 29.54 -169.99 -5.02 14.04 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 O -0.35 -7.95 7.02 -35.23 -0.25 -8.20 16 24 H 0.05 0.70 7.95 -51.93 -0.41 0.29 16 25 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.19 4.19 2.80 -51.93 -0.15 4.05 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 29 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.65 7.95 -51.93 -0.41 0.23 16 31 H 0.19 2.78 8.06 -52.49 -0.42 2.36 16 32 H 0.16 2.53 8.06 -52.48 -0.42 2.11 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.33 8.05 -51.93 -0.42 0.91 16 35 H 0.07 1.33 7.60 -51.93 -0.39 0.94 16 36 H 0.05 0.95 7.85 -51.93 -0.41 0.55 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 2.27 6.04 -51.93 -0.31 1.95 16 40 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -26.37 316.70 -8.39 -34.76 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -6.26 Total: 8.20 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -1.79 Total: -14.59 kcal Atomic # 7 Polarization: -39.15 SS G_CDS: 0.16 Total: -38.99 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.25 Total: -8.20 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.37 -8.39 -34.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310106210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.879 kcal (2) G-P(sol) polarization free energy of solvation -26.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds