Wall clock time and date at job start Mon Mar 30 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47447 * 2 1 4 4 N 1.46506 * 109.47270 * 119.99961 * 2 1 3 5 5 C 1.35043 * 126.39432 * 300.02691 * 4 2 1 6 6 N 1.30499 * 108.69858 * 179.97438 * 5 4 2 7 7 C 1.34129 * 109.25449 * 359.97438 * 6 5 4 8 8 C 1.34671 * 108.02244 * 359.73194 * 7 6 5 9 9 C 1.50696 * 126.59234 * 180.28305 * 8 7 6 10 10 H 1.09001 * 110.27619 * 324.46542 * 9 8 7 11 11 C 1.54945 * 110.31219 * 86.55429 * 9 8 7 12 12 C 1.55407 * 100.89678 * 155.28750 * 11 9 8 13 13 C 1.54389 * 102.30904 * 325.99488 * 12 11 9 14 14 C 1.52997 * 109.90696 * 140.84165 * 13 12 11 15 15 C 1.50697 * 109.82864 * 261.77143 * 13 12 11 16 16 H 1.08006 * 120.00477 * 359.58343 * 15 13 12 17 17 C 1.37879 * 120.00115 * 179.58679 * 15 13 12 18 18 N 1.31514 * 119.99816 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 120.00109 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47097 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46901 * 120.00054 * 19 17 15 22 22 H 1.48502 * 109.47029 * 239.99973 * 19 17 15 23 23 O 1.43239 * 107.58836 * 21.27992 * 13 12 11 24 24 H 1.09001 * 109.47185 * 299.99959 * 1 2 3 25 25 H 1.09002 * 109.46875 * 60.00479 * 1 2 3 26 26 H 1.09006 * 109.46766 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47429 * 239.99586 * 2 1 3 28 28 H 1.08990 * 109.47552 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.46958 * 300.00113 * 3 2 1 30 30 H 1.09001 * 109.46895 * 59.99863 * 3 2 1 31 31 H 1.08001 * 125.65034 * 359.96055 * 5 4 2 32 32 H 1.08004 * 125.99036 * 180.02562 * 7 6 5 33 33 H 1.09003 * 111.12662 * 273.28349 * 11 9 8 34 34 H 1.09003 * 111.12100 * 37.43802 * 11 9 8 35 35 H 1.08998 * 110.88751 * 207.75709 * 12 11 9 36 36 H 1.08997 * 110.93764 * 84.25239 * 12 11 9 37 37 H 1.08996 * 109.46912 * 300.36441 * 14 13 12 38 38 H 1.08994 * 109.47365 * 60.36685 * 14 13 12 39 39 H 1.09000 * 109.47120 * 180.36639 * 14 13 12 40 40 H 0.97002 * 120.00048 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7727 -0.3439 2.4780 6 7 2.3738 -1.1947 3.2641 7 6 3.0178 -2.1059 2.5198 8 6 2.8028 -1.8120 1.2232 9 6 3.3282 -2.5697 0.0313 10 1 4.3268 -2.9545 0.2386 11 6 2.3694 -3.7310 -0.3331 12 6 2.6977 -3.9212 -1.8402 13 6 3.0065 -2.4782 -2.2943 14 6 4.1793 -2.4810 -3.2768 15 6 1.7905 -1.8780 -2.9518 16 1 0.8859 -2.4602 -3.0481 17 6 1.8328 -0.5857 -3.4304 18 7 2.9342 0.1234 -3.3128 19 14 0.3257 0.1581 -4.2460 20 1 -0.7751 -0.8385 -4.2543 21 1 -0.1021 1.3627 -3.4905 22 1 0.6567 0.5410 -5.6421 23 8 3.3514 -1.7218 -1.1279 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.1774 0.4980 2.7994 32 1 3.6020 -2.9334 2.8946 33 1 2.6049 -4.6290 0.2382 34 1 1.3285 -3.4399 -0.1922 35 1 1.8382 -4.3215 -2.3777 36 1 3.5684 -4.5636 -1.9711 37 1 5.0580 -2.9068 -2.7924 38 1 3.9202 -3.0793 -4.1503 39 1 4.3953 -1.4588 -3.5877 40 1 2.9641 1.0324 -3.6499 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310106210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:34 Heat of formation + Delta-G solvation = -2.667123 kcal Electronic energy + Delta-G solvation = -22042.430110 eV Core-core repulsion = 19050.640916 eV Total energy + Delta-G solvation = -2991.789194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.00074 -40.04073 -36.69203 -35.04396 -32.74531 -32.58904 -31.37975 -29.77574 -28.18731 -27.27098 -25.99460 -23.75055 -22.78549 -21.80862 -21.35057 -20.17842 -18.68582 -17.57010 -16.84364 -16.51544 -16.09726 -15.75632 -15.53050 -15.01870 -14.86464 -14.51451 -14.34041 -14.12728 -13.83730 -13.49068 -13.23774 -13.13333 -13.01261 -12.73348 -12.58764 -12.37791 -12.31578 -12.25794 -12.15644 -12.12211 -11.61413 -11.17112 -10.98462 -10.79470 -10.48309 -10.35336 -9.74262 -9.11635 -7.97368 -6.18226 1.24093 1.36737 1.45146 1.50690 2.08167 2.26176 2.43951 3.10098 3.53987 3.79686 3.91090 3.92443 4.01288 4.13277 4.20972 4.33110 4.50728 4.57493 4.60725 4.66363 4.75623 4.78161 4.80537 4.88852 4.97970 5.04243 5.08038 5.14414 5.24862 5.26042 5.29016 5.42961 5.58655 5.72501 5.80812 5.96114 6.14739 6.41710 6.50159 6.67862 7.09976 7.21560 7.54334 9.00813 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.010381 C = 0.007819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.744937 B = 2696.645010 C = 3580.023827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 C -0.134 4.134 4 N -0.426 5.426 5 C 0.162 3.838 6 N -0.522 5.522 7 C -0.048 4.048 8 C -0.020 4.020 9 C 0.137 3.863 10 H 0.083 0.917 11 C -0.124 4.124 12 C -0.138 4.138 13 C 0.215 3.785 14 C -0.135 4.135 15 C -0.539 4.539 16 H 0.050 0.950 17 C 0.058 3.942 18 N -0.872 5.872 19 Si 0.911 3.089 20 H -0.272 1.272 21 H -0.273 1.273 22 H -0.287 1.287 23 O -0.369 6.369 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.163 0.837 28 H 0.038 0.962 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.223 0.777 32 H 0.184 0.816 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.026 0.974 38 H 0.040 0.960 39 H 0.062 0.938 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.288 -2.042 5.359 6.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 C -0.191 4.191 4 N -0.107 5.107 5 C -0.119 4.119 6 N -0.241 5.241 7 C -0.196 4.196 8 C -0.137 4.137 9 C 0.078 3.922 10 H 0.101 0.899 11 C -0.161 4.161 12 C -0.176 4.176 13 C 0.178 3.822 14 C -0.193 4.193 15 C -0.577 4.577 16 H 0.068 0.932 17 C -0.146 4.146 18 N -0.509 5.509 19 Si 0.737 3.263 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.213 1.213 23 O -0.289 6.289 24 H 0.094 0.906 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.180 0.820 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.201 0.799 33 H 0.116 0.884 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.234 -1.525 6.024 6.604 hybrid contribution -0.759 0.476 -1.599 1.833 sum -2.993 -1.050 4.426 5.445 Atomic orbital electron populations 1.22018 0.93622 1.02042 1.02787 1.22497 0.95251 0.95121 0.89431 1.21835 1.00557 0.94558 1.02188 1.45639 1.36236 1.20801 1.07985 1.25218 1.04553 1.02628 0.79531 1.70218 1.13780 1.06026 1.34093 1.22207 1.06430 1.02556 0.88387 1.21609 1.01770 0.93011 0.97354 1.21294 0.97391 0.89406 0.84111 0.89949 1.23060 0.98702 0.98109 0.96278 1.23168 1.01356 0.97899 0.95138 1.19751 0.92421 0.86905 0.83096 1.21897 0.96718 1.02186 0.98498 1.21441 0.98336 0.99101 1.38787 0.93226 1.25332 0.96857 0.97388 0.95010 1.70077 1.26582 1.09494 1.44706 0.86263 0.81996 0.79187 0.78823 1.19650 1.19808 1.21304 1.88647 1.90001 1.35267 1.14960 0.90608 0.91546 0.93223 0.81989 0.94239 0.91763 0.91065 0.76065 0.79902 0.88393 0.92854 0.91314 0.90824 0.95497 0.94048 0.91908 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.24 71.98 0.67 -4.19 16 2 C 0.08 2.97 3.35 44.99 0.15 3.12 16 3 C -0.13 -4.71 9.24 71.98 0.67 -4.04 16 4 N -0.43 -15.76 2.62 -492.17 -1.29 -17.05 16 5 C 0.16 5.43 11.55 180.26 2.08 7.51 16 6 N -0.52 -18.89 11.25 -200.30 -2.25 -21.14 16 7 C -0.05 -1.67 11.79 83.52 0.98 -0.69 16 8 C -0.02 -0.76 6.10 40.95 0.25 -0.51 16 9 C 0.14 5.20 3.90 30.51 0.12 5.32 16 10 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 11 C -0.12 -4.20 6.57 32.09 0.21 -3.99 16 12 C -0.14 -5.06 6.08 31.89 0.19 -4.86 16 13 C 0.22 9.58 0.82 -11.07 -0.01 9.57 16 14 C -0.14 -6.04 8.52 71.98 0.61 -5.43 16 15 C -0.54 -26.19 7.34 25.60 0.19 -26.00 16 16 H 0.05 2.45 7.48 -2.91 -0.02 2.43 16 17 C 0.06 2.83 4.27 84.66 0.36 3.19 16 18 N -0.87 -44.36 10.89 21.45 0.23 -44.13 16 19 Si 0.91 39.08 29.54 68.60 2.03 41.11 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 23 O -0.37 -16.77 7.02 -148.98 -1.05 -17.82 16 24 H 0.08 2.03 7.95 -2.39 -0.02 2.01 16 25 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.16 7.23 2.80 -2.39 -0.01 7.23 16 28 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 30 H 0.07 2.03 7.95 -2.39 -0.02 2.01 16 31 H 0.22 5.67 8.06 -2.91 -0.02 5.65 16 32 H 0.18 5.30 8.06 -2.91 -0.02 5.28 16 33 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 34 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 35 H 0.07 2.52 7.60 -2.39 -0.02 2.50 16 36 H 0.07 2.40 7.85 -2.39 -0.02 2.38 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.06 3.17 6.04 -2.39 -0.01 3.15 16 40 H 0.26 12.75 8.31 -92.71 -0.77 11.98 16 Total: -1.00 -55.89 316.70 5.16 -50.73 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: 1.01 Total: 29.31 kcal Atomic # 6 Polarization: -27.47 SS G_CDS: 6.48 Total: -21.00 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -3.31 Total: -82.33 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -1.05 Total: -17.82 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -55.89 5.16 -50.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310106210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.059 kcal (2) G-P(sol) polarization free energy of solvation -55.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds