Wall clock time and date at job start Mon Mar 30 2020 06:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.35042 * 126.40195 * 59.68825 * 4 2 1 6 6 N 1.30497 * 108.70177 * 179.82528 * 5 4 2 7 7 C 1.34126 * 109.25605 * 0.44286 * 6 5 4 8 8 C 1.34667 * 108.02358 * 359.72683 * 7 6 5 9 9 C 1.50700 * 126.59710 * 180.02562 * 8 7 6 10 10 H 1.08994 * 110.55091 * 205.66066 * 9 8 7 11 11 C 1.54994 * 110.61530 * 82.77467 * 9 8 7 12 12 C 1.54995 * 102.01056 * 204.59766 * 11 9 8 13 13 C 1.54105 * 104.24920 * 20.66820 * 12 11 9 14 14 C 1.52998 * 110.00262 * 242.67032 * 13 12 11 15 15 C 1.50697 * 109.87413 * 121.59198 * 13 12 11 16 16 H 1.08001 * 120.00472 * 0.70683 * 15 13 12 17 17 C 1.37883 * 119.99855 * 180.71649 * 15 13 12 18 18 N 1.31509 * 119.99955 * 359.97438 * 17 15 13 19 19 Si 1.86807 * 119.99907 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47028 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46950 * 119.99858 * 19 17 15 22 22 H 1.48494 * 109.46914 * 239.99914 * 19 17 15 23 23 O 1.43739 * 107.29697 * 2.16651 * 13 12 11 24 24 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 26 26 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 27 27 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 30 30 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 31 31 H 1.08006 * 125.64644 * 359.97438 * 5 4 2 32 32 H 1.08002 * 125.98905 * 179.72155 * 7 6 5 33 33 H 1.08996 * 110.91219 * 322.67297 * 11 9 8 34 34 H 1.09004 * 110.90337 * 86.28554 * 11 9 8 35 35 H 1.09001 * 110.33899 * 262.03422 * 12 11 9 36 36 H 1.08996 * 110.57025 * 139.42354 * 12 11 9 37 37 H 1.09005 * 109.47060 * 179.36497 * 14 13 12 38 38 H 1.09004 * 109.47225 * 299.35840 * 14 13 12 39 39 H 1.08993 * 109.47049 * 59.36345 * 14 13 12 40 40 H 0.96999 * 120.00114 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.7682 -0.3470 -2.4781 6 7 2.3743 -1.1941 -3.2642 7 6 3.0186 -2.1052 -2.5199 8 6 2.8084 -1.8080 -1.2234 9 6 3.3412 -2.5606 -0.0314 10 1 2.6954 -2.4131 0.8341 11 6 4.7922 -2.1195 0.2885 12 6 5.3507 -3.3608 1.0299 13 6 4.4193 -4.5106 0.5993 14 6 3.6845 -5.0731 1.8177 15 6 5.2228 -5.6003 -0.0624 16 1 6.2936 -5.4985 -0.1599 17 6 4.5909 -6.7274 -0.5436 18 7 3.2871 -6.8517 -0.4246 19 14 5.5869 -8.0779 -1.3645 20 1 7.0225 -7.6984 -1.3736 21 1 5.4146 -9.3467 -0.6125 22 1 5.1152 -8.2619 -2.7605 23 8 3.4718 -3.9663 -0.3346 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.6768 1.9562 0.8901 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.1680 0.4915 -2.7994 32 1 3.6033 -2.9322 -2.8948 33 1 5.3522 -1.9305 -0.6273 34 1 4.7984 -1.2419 0.9349 35 1 5.2999 -3.2125 2.1085 36 1 6.3756 -3.5634 0.7193 37 1 3.0203 -5.8777 1.5019 38 1 4.4102 -5.4608 2.5327 39 1 3.0995 -4.2819 2.2864 40 1 2.8426 -7.6447 -0.7628 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310106213.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:37 Heat of formation + Delta-G solvation = 11.902882 kcal Electronic energy + Delta-G solvation = -20978.049410 eV Core-core repulsion = 17986.892019 eV Total energy + Delta-G solvation = -2991.157391 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77219 -38.32560 -35.93105 -33.11506 -31.11259 -30.94591 -30.09418 -28.13961 -27.51811 -25.47242 -24.43514 -22.90444 -21.45659 -20.42693 -19.37015 -18.91306 -17.03976 -16.42775 -15.37017 -14.99723 -14.78729 -14.46932 -13.99837 -13.84119 -13.35345 -13.12652 -13.02623 -12.79750 -12.48450 -12.47446 -12.16666 -11.77916 -11.58441 -11.33658 -11.23984 -10.92134 -10.85962 -10.67761 -10.44824 -10.27208 -9.88812 -9.71281 -9.41333 -9.20263 -9.10886 -8.50925 -8.09000 -7.75707 -5.95452 -4.11172 2.43765 2.97613 3.32198 3.41043 3.43706 3.66855 4.43967 4.44659 4.72619 4.76163 4.89320 4.99717 5.23276 5.26790 5.42823 5.46161 5.48403 5.53716 5.59025 5.72873 5.78954 5.82510 5.93555 6.04369 6.26420 6.31636 6.40487 6.53571 6.67825 6.76169 6.85604 6.89106 7.13471 7.25805 7.29079 7.61435 7.78538 8.10103 8.32551 8.49267 8.58479 9.00915 9.59511 11.07078 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.026627 B = 0.005895 C = 0.005478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.293170 B = 4748.861670 C = 5110.487841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.124 3.876 3 C -0.160 4.160 4 N -0.452 5.452 5 C 0.166 3.834 6 N -0.498 5.498 7 C -0.003 4.003 8 C -0.003 4.003 9 C 0.143 3.857 10 H 0.050 0.950 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.225 3.775 14 C -0.148 4.148 15 C -0.522 4.522 16 H 0.063 0.937 17 C 0.080 3.920 18 N -0.859 5.859 19 Si 0.889 3.111 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 O -0.328 6.328 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.195 0.805 32 H 0.173 0.827 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.008 0.992 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 14.514 3.642 15.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.021 3.979 3 C -0.218 4.218 4 N -0.138 5.138 5 C -0.115 4.115 6 N -0.216 5.216 7 C -0.150 4.150 8 C -0.116 4.116 9 C 0.082 3.918 10 H 0.067 0.933 11 C -0.177 4.177 12 C -0.178 4.178 13 C 0.188 3.812 14 C -0.206 4.206 15 C -0.560 4.560 16 H 0.081 0.919 17 C -0.125 4.125 18 N -0.495 5.495 19 Si 0.717 3.283 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 O -0.246 6.246 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.212 0.788 32 H 0.190 0.810 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.055 0.945 39 H 0.027 0.973 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.124 14.348 2.705 15.172 hybrid contribution 0.459 -0.587 0.611 0.964 sum -3.665 13.762 3.316 14.622 Atomic orbital electron populations 1.22165 0.93406 1.03453 1.02929 1.21403 0.95353 0.93774 0.87355 1.22154 1.02249 0.94373 1.02991 1.45411 1.38526 1.22552 1.07315 1.24582 1.05029 1.02655 0.79233 1.70276 1.12409 1.05304 1.33659 1.22103 1.03883 1.00129 0.88884 1.21110 1.00862 0.91386 0.98269 1.20923 0.94099 0.86651 0.90080 0.93254 1.23101 0.96297 0.97802 1.00536 1.23111 1.01366 0.94996 0.98369 1.19704 0.84715 0.89742 0.87084 1.22166 1.00401 1.01029 0.97006 1.21089 0.93049 1.01085 1.40753 0.91902 1.25030 0.94765 0.97914 0.94831 1.69960 1.07892 1.27610 1.44020 0.86596 0.80509 0.81770 0.79454 1.19692 1.21012 1.20818 1.89364 1.64339 1.14454 1.56482 0.91488 0.90705 0.91754 0.88314 0.90706 0.91710 0.91743 0.78832 0.81005 0.91025 0.92542 0.92916 0.91286 0.89129 0.94468 0.97328 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.24 37.16 0.34 -1.17 16 2 C 0.12 1.39 3.56 -67.93 -0.24 1.15 16 3 C -0.16 -1.37 9.25 37.16 0.34 -1.02 16 4 N -0.45 -6.89 2.62 -106.91 -0.28 -7.17 16 5 C 0.17 2.55 11.55 -90.38 -1.04 1.51 16 6 N -0.50 -9.59 11.25 -14.66 -0.16 -9.76 16 7 C 0.00 -0.06 11.46 -17.81 -0.20 -0.27 16 8 C 0.00 -0.05 6.09 -81.60 -0.50 -0.55 16 9 C 0.14 2.89 3.45 -26.83 -0.09 2.79 16 10 H 0.05 0.96 7.10 -51.93 -0.37 0.59 16 11 C -0.14 -2.56 6.59 -24.62 -0.16 -2.72 16 12 C -0.14 -2.87 6.27 -25.10 -0.16 -3.03 16 13 C 0.22 5.54 0.74 -91.20 -0.07 5.48 16 14 C -0.15 -3.55 8.39 37.16 0.31 -3.23 16 15 C -0.52 -14.23 8.25 -34.44 -0.28 -14.51 16 16 H 0.06 1.69 7.33 -52.49 -0.38 1.30 16 17 C 0.08 2.22 5.26 -17.82 -0.09 2.12 16 18 N -0.86 -24.66 10.94 55.43 0.61 -24.06 16 19 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 O -0.33 -8.35 9.77 -35.23 -0.34 -8.69 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.54 7.94 -51.93 -0.41 0.13 16 27 H 0.10 1.15 6.76 -51.93 -0.35 0.80 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.50 7.95 -51.93 -0.41 0.09 16 31 H 0.20 2.15 8.06 -52.48 -0.42 1.72 16 32 H 0.17 3.80 8.06 -52.49 -0.42 3.38 16 33 H 0.07 1.35 8.05 -51.93 -0.42 0.94 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 36 H 0.07 1.41 7.40 -51.93 -0.38 1.03 16 37 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -31.43 323.25 -8.56 -40.00 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.39 Total: 2.06 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -1.85 Total: -13.46 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.16 Total: -40.99 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.34 Total: -8.69 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.43 -8.56 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310106213.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.898 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds