Wall clock time and date at job start Mon Mar 30 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47615 * 2 1 4 4 N 1.46499 * 109.47537 * 180.02562 * 3 2 1 5 5 C 1.34945 * 126.04046 * 125.25370 * 4 3 2 6 6 C 1.35314 * 107.74845 * 180.14751 * 5 4 3 7 7 C 1.50697 * 126.04461 * 179.87489 * 6 5 4 8 8 H 1.09007 * 110.35073 * 337.57853 * 7 6 5 9 9 C 1.54947 * 110.30950 * 99.71537 * 7 6 5 10 10 C 1.55306 * 100.97824 * 155.34179 * 9 7 6 11 11 C 1.54429 * 102.23000 * 325.92130 * 10 9 7 12 12 C 1.53000 * 109.79427 * 261.79498 * 11 10 9 13 13 C 1.50699 * 109.92855 * 140.87749 * 11 10 9 14 14 H 1.08004 * 119.99770 * 0.33241 * 13 11 10 15 15 C 1.37876 * 120.00259 * 180.32957 * 13 11 10 16 16 N 1.31509 * 120.00010 * 0.02562 * 15 13 11 17 17 Si 1.86799 * 120.00215 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46793 * 60.00322 * 17 15 13 19 19 H 1.48493 * 109.47243 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47153 * 300.00756 * 17 15 13 21 21 O 1.43234 * 107.60919 * 21.29662 * 11 10 9 22 22 C 1.39871 * 107.91997 * 359.61650 * 6 5 4 23 23 N 1.30836 * 108.20148 * 0.23886 * 22 6 5 24 24 H 1.09005 * 109.47080 * 59.99839 * 1 2 3 25 25 H 1.08998 * 109.47485 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46729 * 300.00128 * 1 2 3 27 27 H 1.09006 * 109.46729 * 239.99872 * 2 1 3 28 28 H 1.09005 * 109.47080 * 120.00161 * 2 1 3 29 29 H 1.08996 * 109.47279 * 60.00035 * 3 2 1 30 30 H 1.09005 * 109.47028 * 300.00193 * 3 2 1 31 31 H 1.07998 * 126.12859 * 0.02562 * 5 4 3 32 32 H 1.09002 * 111.12777 * 273.28448 * 9 7 6 33 33 H 1.08995 * 111.12300 * 37.40341 * 9 7 6 34 34 H 1.09001 * 110.84858 * 84.08537 * 10 9 7 35 35 H 1.09006 * 110.84549 * 207.69503 * 10 9 7 36 36 H 1.08998 * 109.47650 * 179.58656 * 12 11 10 37 37 H 1.09002 * 109.47271 * 299.59165 * 12 11 10 38 38 H 1.09001 * 109.46927 * 59.58327 * 12 11 10 39 39 H 0.96998 * 120.00272 * 179.97438 * 16 15 13 40 40 H 1.07999 * 125.90625 * 180.21681 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2986 2.0723 -0.8919 6 6 5.5835 1.8244 -0.5476 7 6 6.8076 2.3285 -1.2677 8 1 6.5632 2.5809 -2.2996 9 6 7.3918 3.5630 -0.5361 10 6 8.8754 3.5019 -0.9912 11 6 9.1246 1.9811 -1.0909 12 6 9.8189 1.4855 0.1792 13 6 9.9817 1.6789 -2.2930 14 1 10.3257 2.4828 -2.9269 15 6 10.3269 0.3760 -2.5835 16 7 9.9078 -0.6030 -1.8119 17 14 11.3888 0.0013 -4.0739 18 1 12.6940 0.6967 -3.9392 19 1 11.6149 -1.4635 -4.1649 20 1 10.7013 0.4729 -5.3028 21 8 7.8505 1.3415 -1.2294 22 6 5.5749 1.0225 0.5984 23 7 4.3296 0.7928 0.9271 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.6767 1.9563 -0.8900 31 1 3.9676 2.6662 -1.7310 32 1 6.9145 4.4827 -0.8747 33 1 7.3078 3.4549 0.5453 34 1 9.0033 3.9803 -1.9622 35 1 9.5289 3.9548 -0.2454 36 1 9.9856 0.4108 0.1064 37 1 10.7759 1.9948 0.2925 38 1 9.1898 1.6979 1.0436 39 1 10.1503 -1.5196 -2.0165 40 1 6.4458 0.6558 1.1214 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310131402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:31 Heat of formation + Delta-G solvation = 24.307243 kcal Electronic energy + Delta-G solvation = -20248.263566 eV Core-core repulsion = 17257.644068 eV Total energy + Delta-G solvation = -2990.619498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83243 -38.15170 -35.37302 -33.00760 -31.36755 -30.89502 -30.67438 -28.60296 -26.34348 -25.17737 -23.94064 -22.23085 -21.30153 -20.41744 -19.44552 -19.14223 -16.69926 -16.34820 -15.58923 -15.15013 -14.58926 -14.50558 -14.04092 -13.90405 -13.30865 -13.14947 -12.78983 -12.31296 -12.17131 -12.11523 -12.03394 -11.67264 -11.59613 -11.10486 -11.04573 -10.88508 -10.81957 -10.57677 -10.48320 -10.36425 -9.95893 -9.85432 -9.42619 -9.00703 -8.99810 -8.39998 -8.02264 -7.63130 -5.86014 -4.02498 2.23825 2.79079 3.29107 3.36813 3.41635 3.43601 4.46588 4.49127 4.70290 4.92559 5.06026 5.09549 5.22466 5.28108 5.40781 5.49365 5.61823 5.63341 5.75522 5.82399 5.87830 5.97481 6.03476 6.16233 6.17973 6.38724 6.51067 6.65046 6.73170 6.83916 6.99528 7.02819 7.13685 7.21018 7.35658 7.51995 7.87082 8.11628 8.19401 8.46658 8.75425 9.16218 9.68624 11.15554 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.004637 C = 0.004318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.947143 B = 6036.937155 C = 6482.916925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.140 3.860 4 N -0.383 5.383 5 C 0.044 3.956 6 C -0.211 4.211 7 C 0.151 3.849 8 H 0.055 0.945 9 C -0.145 4.145 10 C -0.142 4.142 11 C 0.229 3.771 12 C -0.138 4.138 13 C -0.536 4.536 14 H 0.057 0.943 15 C 0.082 3.918 16 N -0.859 5.859 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.343 6.343 22 C 0.078 3.922 23 N -0.308 5.308 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.167 0.833 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.034 0.966 38 H 0.011 0.989 39 H 0.259 0.741 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.610 5.318 3.114 15.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.018 3.982 4 N -0.166 5.166 5 C -0.101 4.101 6 C -0.222 4.222 7 C 0.091 3.909 8 H 0.073 0.927 9 C -0.183 4.183 10 C -0.180 4.180 11 C 0.192 3.808 12 C -0.196 4.196 13 C -0.573 4.573 14 H 0.075 0.925 15 C -0.123 4.123 16 N -0.495 5.495 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 O -0.262 6.262 22 C -0.108 4.108 23 N -0.129 5.129 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.185 0.815 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.069 0.931 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.575 4.316 3.957 16.639 hybrid contribution 1.126 0.420 -1.515 1.934 sum -14.449 4.735 2.441 15.400 Atomic orbital electron populations 1.21710 0.94799 1.02301 1.01871 1.21806 0.95936 0.95876 1.03933 1.21627 0.74937 0.98534 1.03083 1.48502 1.05779 1.40230 1.22132 1.22129 0.90884 1.00542 0.96564 1.20319 0.94030 1.07418 1.00467 1.20786 0.86609 0.88360 0.95118 0.92747 1.23219 0.96976 0.97784 1.00314 1.23234 0.94252 1.00260 1.00212 1.19620 0.81967 0.85273 0.93970 1.21974 0.97339 1.05130 0.95154 1.21254 1.31700 0.92723 1.11660 0.92530 1.24980 0.94921 0.96467 0.95945 1.69942 1.43298 0.99339 1.36921 0.86791 0.80933 0.77137 0.83803 1.20305 1.21301 1.20297 1.88777 1.14077 1.29403 1.93979 1.23774 0.94529 0.96577 0.95938 1.77261 1.01765 1.19840 1.14045 0.92561 0.92112 0.92462 0.91361 0.90407 0.90409 0.89195 0.81544 0.92202 0.91665 0.91867 0.92282 0.89258 0.94714 0.96945 0.93117 0.79981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.15 0.37 -0.71 16 2 C -0.14 -1.38 6.12 -26.74 -0.16 -1.55 16 3 C 0.14 1.45 6.51 -4.05 -0.03 1.42 16 4 N -0.38 -5.75 3.68 -61.37 -0.23 -5.98 16 5 C 0.04 0.67 11.36 -17.23 -0.20 0.48 16 6 C -0.21 -3.93 5.17 -105.06 -0.54 -4.48 16 7 C 0.15 3.11 3.89 -26.86 -0.10 3.01 16 8 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 9 C -0.14 -2.67 6.56 -24.48 -0.16 -2.83 16 10 C -0.14 -2.95 6.08 -24.76 -0.15 -3.10 16 11 C 0.23 5.73 0.82 -91.02 -0.07 5.66 16 12 C -0.14 -3.38 8.50 37.16 0.32 -3.07 16 13 C -0.54 -14.82 8.22 -34.44 -0.28 -15.11 16 14 H 0.06 1.54 7.53 -52.48 -0.40 1.14 16 15 C 0.08 2.30 5.26 -17.82 -0.09 2.20 16 16 N -0.86 -24.92 10.92 55.43 0.61 -24.31 16 17 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 O -0.34 -8.80 9.60 -35.23 -0.34 -9.13 16 22 C 0.08 1.49 11.68 -17.36 -0.20 1.29 16 23 N -0.31 -5.53 12.42 30.62 0.38 -5.15 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 31 H 0.17 1.97 8.06 -52.49 -0.42 1.54 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.06 1.30 7.66 -51.93 -0.40 0.91 16 35 H 0.06 1.14 7.82 -51.93 -0.41 0.74 16 36 H 0.09 2.43 6.04 -51.93 -0.31 2.11 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.18 3.51 8.06 -52.49 -0.42 3.09 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -31.57 328.60 -7.52 -39.09 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.56 Total: 0.94 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.32 Total: -16.77 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.76 Total: -35.44 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.34 Total: -9.13 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.57 -7.52 -39.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310131402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.396 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds