Wall clock time and date at job start Mon Mar 30 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47240 * 2 1 4 4 N 1.46904 * 109.47068 * 239.99882 * 2 1 3 5 5 C 1.52999 * 109.47108 * 120.00362 * 2 1 3 6 6 C 1.52997 * 109.47002 * 300.00245 * 5 2 1 7 7 N 1.46505 * 109.47099 * 180.02562 * 6 5 2 8 8 C 1.39676 * 120.00079 * 179.97438 * 7 6 5 9 9 C 1.39012 * 120.03933 * 359.97201 * 8 7 6 10 10 C 1.38143 * 120.06228 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72769 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47205 * 59.99691 * 18 16 14 20 20 H 1.48503 * 109.46997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99529 * 18 16 14 22 22 C 1.38746 * 120.04204 * 179.97438 * 8 7 6 23 23 H 1.08999 * 109.47287 * 299.99500 * 1 2 3 24 24 H 1.09000 * 109.46984 * 59.99669 * 1 2 3 25 25 H 1.08996 * 109.47260 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47159 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47402 * 300.00075 * 3 2 1 28 28 H 1.09008 * 109.47155 * 60.00210 * 3 2 1 29 29 H 1.00900 * 111.00401 * 296.05175 * 4 2 1 30 30 H 1.00905 * 110.99630 * 60.00540 * 4 2 1 31 31 H 1.08993 * 109.47281 * 179.97438 * 5 2 1 32 32 H 1.09004 * 109.47008 * 59.99496 * 5 2 1 33 33 H 1.08993 * 109.47564 * 59.99608 * 6 5 2 34 34 H 1.09004 * 109.46627 * 299.99484 * 6 5 2 35 35 H 0.96996 * 120.00220 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.96626 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.93082 * 179.97438 * 10 9 8 38 38 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 39 39 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.07071 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -0.0002 2.4984 7 7 2.0188 -0.6905 3.6946 8 6 1.6818 -0.2130 4.9632 9 6 0.8832 0.9175 5.0918 10 6 0.5501 1.3904 6.3463 11 6 1.0046 0.7387 7.4767 12 6 1.8078 -0.3881 7.3551 13 8 2.2585 -1.0243 8.4664 14 6 2.9315 -2.1778 8.2809 15 1 3.1616 -2.5138 7.2806 16 6 3.3281 -2.9327 9.3741 17 7 3.0482 -2.5231 10.5926 18 14 4.2599 -4.5311 9.1170 19 1 5.5268 -4.2547 8.3933 20 1 4.5666 -5.1428 10.4350 21 1 3.4275 -5.4663 8.3184 22 6 2.1439 -0.8665 6.0966 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.7502 -1.6648 -1.1910 30 1 1.6962 -0.2349 -2.0386 31 1 3.1299 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2491 33 1 0.4400 -0.0001 2.4984 34 1 1.8934 1.0275 2.4985 35 1 2.5764 -1.4791 3.6056 36 1 0.5228 1.4265 4.2101 37 1 -0.0702 2.2692 6.4437 38 1 0.7385 1.1083 8.4560 39 1 3.3260 -3.0510 11.3575 40 1 2.7642 -1.7452 5.9996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310186436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:38 Heat of formation + Delta-G solvation = -11.547570 kcal Electronic energy + Delta-G solvation = -19449.054107 eV Core-core repulsion = 16456.879828 eV Total energy + Delta-G solvation = -2992.174279 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.15477 -38.44264 -36.79520 -34.53834 -32.16856 -31.00469 -29.29899 -28.61554 -27.58283 -27.15755 -25.19173 -23.64044 -21.65310 -20.47624 -19.30503 -17.84652 -17.26458 -16.10535 -15.88770 -15.27232 -15.16431 -14.93597 -14.42624 -14.22516 -13.85233 -13.58162 -13.45729 -13.32075 -12.83761 -12.51998 -12.35326 -12.18010 -11.87444 -11.59728 -11.48227 -11.34791 -11.15462 -11.03747 -10.77180 -10.72791 -10.54020 -10.36634 -9.35374 -9.32442 -9.03413 -8.72148 -7.30785 -6.72899 -6.37573 -3.96865 2.42207 2.61486 3.16563 3.18273 3.20399 3.73198 4.02643 4.16923 4.56344 4.62707 4.74605 4.88582 5.09722 5.13138 5.19816 5.33029 5.40536 5.44924 5.50092 5.60617 5.72947 5.76645 5.79201 5.86478 6.02440 6.04433 6.11804 6.31863 6.40495 6.68478 6.69737 6.85471 7.08252 7.12318 7.19049 7.42716 7.53115 7.71332 8.06941 8.08882 8.25248 9.08518 9.81479 10.80841 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.003947 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.074885 B = 7091.935181 C = 8065.908138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.117 3.883 3 C -0.143 4.143 4 N -0.841 5.841 5 C -0.118 4.118 6 C 0.130 3.870 7 N -0.755 5.755 8 C 0.249 3.751 9 C -0.280 4.280 10 C -0.040 4.040 11 C -0.237 4.237 12 C 0.190 3.810 13 O -0.179 6.179 14 C -0.389 4.389 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.865 5.865 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.271 1.271 22 C -0.303 4.303 23 H 0.068 0.932 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.340 0.660 30 H 0.340 0.660 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.102 0.898 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.269 0.731 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.698 4.052 -20.129 20.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.024 3.976 3 C -0.201 4.201 4 N -0.370 5.370 5 C -0.157 4.157 6 C 0.005 3.995 7 N -0.387 5.387 8 C 0.148 3.852 9 C -0.303 4.303 10 C -0.059 4.059 11 C -0.258 4.258 12 C 0.135 3.865 13 O -0.082 6.082 14 C -0.466 4.466 15 H 0.107 0.893 16 C -0.165 4.165 17 N -0.501 5.501 18 Si 0.764 3.236 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.196 1.196 22 C -0.327 4.327 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.228 0.772 36 H 0.120 0.880 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.024 4.336 -19.504 20.207 hybrid contribution -0.375 -1.338 -0.482 1.471 sum -3.399 2.998 -19.985 20.492 Atomic orbital electron populations 1.22728 0.96990 1.02131 1.02638 1.20689 0.91956 0.94635 0.90352 1.21906 1.02084 0.94262 1.01823 1.58900 1.67574 1.06631 1.03909 1.21734 1.02034 0.99278 0.92625 1.21301 0.98326 0.96076 0.83776 1.44527 1.58668 1.33208 1.02297 1.17469 0.91926 0.91859 0.83987 1.20059 1.11458 1.01777 0.96963 1.20373 0.96727 0.97222 0.91609 1.20038 1.07382 0.99866 0.98484 1.19065 0.89929 0.91096 0.86403 1.83986 1.62705 1.34471 1.27023 1.21253 1.33777 0.97023 0.94519 0.89261 1.25263 0.97769 0.99168 0.94346 1.70035 1.43942 1.38329 0.97783 0.85811 0.79496 0.80375 0.77893 1.19595 1.20323 1.19612 1.20507 1.14134 1.06995 0.91016 0.91302 0.92738 0.92610 0.91711 0.92905 0.91575 0.84724 0.84734 0.90533 0.91619 0.92656 0.92413 0.77244 0.87976 0.87241 0.86933 0.92091 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 8.41 37.16 0.31 -1.10 16 2 C 0.12 0.95 1.00 -131.60 -0.13 0.82 16 3 C -0.14 -1.18 8.41 37.15 0.31 -0.87 16 4 N -0.84 -6.25 8.88 0.74 0.01 -6.24 16 5 C -0.12 -1.15 4.64 -26.73 -0.12 -1.28 16 6 C 0.13 1.55 4.21 -4.04 -0.02 1.53 16 7 N -0.76 -11.50 5.73 -58.65 -0.34 -11.84 16 8 C 0.25 4.79 6.65 -83.81 -0.56 4.23 16 9 C -0.28 -5.10 9.31 -39.33 -0.37 -5.47 16 10 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 11 C -0.24 -5.27 9.99 -39.36 -0.39 -5.67 16 12 C 0.19 4.78 6.64 -39.14 -0.26 4.52 16 13 O -0.18 -5.26 9.76 0.04 0.00 -5.26 16 14 C -0.39 -11.16 9.49 30.88 0.29 -10.86 16 15 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.87 -25.90 13.67 55.48 0.76 -25.14 16 18 Si 0.94 20.91 29.55 -169.99 -5.02 15.89 16 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 C -0.30 -6.85 9.01 -39.20 -0.35 -7.20 16 23 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.55 6.43 -51.92 -0.33 0.22 16 29 H 0.34 2.25 8.98 -39.29 -0.35 1.90 16 30 H 0.34 2.07 9.00 -39.29 -0.35 1.71 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.66 6.24 -51.93 -0.32 0.34 16 34 H 0.06 0.70 6.23 -51.93 -0.32 0.37 16 35 H 0.39 5.62 8.48 -40.82 -0.35 5.27 16 36 H 0.10 1.60 6.73 -52.49 -0.35 1.25 16 37 H 0.11 1.69 8.06 -52.48 -0.42 1.27 16 38 H 0.11 2.43 8.06 -52.48 -0.42 2.00 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.12 2.80 5.64 -52.49 -0.30 2.51 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -31.56 324.83 -7.28 -38.85 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -5.81 Total: 10.39 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: -1.78 Total: -21.54 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: 0.43 Total: -43.22 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.56 -7.28 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310186436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.298 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds