Wall clock time and date at job start Mon Mar 30 2020 06:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52990 * 109.47240 * 2 1 4 4 N 1.46904 * 109.47068 * 239.99882 * 2 1 3 5 5 C 1.52999 * 109.47108 * 120.00362 * 2 1 3 6 6 C 1.52997 * 109.47002 * 300.00245 * 5 2 1 7 7 N 1.46505 * 109.47099 * 180.02562 * 6 5 2 8 8 C 1.39676 * 120.00079 * 179.97438 * 7 6 5 9 9 C 1.39012 * 120.03933 * 359.97201 * 8 7 6 10 10 C 1.38143 * 120.06228 * 180.02562 * 9 8 7 11 11 C 1.38174 * 120.14227 * 359.72769 * 10 9 8 12 12 C 1.38912 * 120.07871 * 0.55434 * 11 10 9 13 13 O 1.35751 * 120.03093 * 179.72008 * 12 11 10 14 14 C 1.34833 * 117.00044 * 174.18559 * 13 12 11 15 15 H 1.08001 * 119.99756 * 5.05336 * 14 13 12 16 16 C 1.38647 * 120.00273 * 185.05790 * 14 13 12 17 17 N 1.31562 * 119.99649 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00109 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47205 * 59.99691 * 18 16 14 20 20 H 1.48503 * 109.46997 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46898 * 299.99529 * 18 16 14 22 22 C 1.38746 * 120.04204 * 179.97438 * 8 7 6 23 23 H 1.08999 * 109.47287 * 299.99500 * 1 2 3 24 24 H 1.09000 * 109.46984 * 59.99669 * 1 2 3 25 25 H 1.08996 * 109.47260 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47159 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47402 * 300.00075 * 3 2 1 28 28 H 1.09008 * 109.47155 * 60.00210 * 3 2 1 29 29 H 1.00900 * 111.00401 * 296.05175 * 4 2 1 30 30 H 1.00905 * 110.99630 * 60.00540 * 4 2 1 31 31 H 1.08993 * 109.47281 * 179.97438 * 5 2 1 32 32 H 1.09004 * 109.47008 * 59.99496 * 5 2 1 33 33 H 1.08993 * 109.47564 * 59.99608 * 6 5 2 34 34 H 1.09004 * 109.46627 * 299.99484 * 6 5 2 35 35 H 0.96996 * 120.00220 * 359.97438 * 7 6 5 36 36 H 1.08000 * 119.96626 * 0.02562 * 9 8 7 37 37 H 1.08004 * 119.93082 * 179.97438 * 10 9 8 38 38 H 1.08003 * 119.96054 * 180.29241 * 11 10 9 39 39 H 0.96998 * 119.99725 * 180.02562 * 17 16 14 40 40 H 1.07995 * 120.07071 * 359.97438 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -0.0002 2.4984 7 7 2.0188 -0.6905 3.6946 8 6 1.6818 -0.2130 4.9632 9 6 0.8832 0.9175 5.0918 10 6 0.5501 1.3904 6.3463 11 6 1.0046 0.7387 7.4767 12 6 1.8078 -0.3881 7.3551 13 8 2.2585 -1.0243 8.4664 14 6 2.9315 -2.1778 8.2809 15 1 3.1616 -2.5138 7.2806 16 6 3.3281 -2.9327 9.3741 17 7 3.0482 -2.5231 10.5926 18 14 4.2599 -4.5311 9.1170 19 1 5.5268 -4.2547 8.3933 20 1 4.5666 -5.1428 10.4350 21 1 3.4275 -5.4663 8.3184 22 6 2.1439 -0.8665 6.0966 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.7502 -1.6648 -1.1910 30 1 1.6962 -0.2349 -2.0386 31 1 3.1299 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2491 33 1 0.4400 -0.0001 2.4984 34 1 1.8934 1.0275 2.4985 35 1 2.5764 -1.4791 3.6056 36 1 0.5228 1.4265 4.2101 37 1 -0.0702 2.2692 6.4437 38 1 0.7385 1.1083 8.4560 39 1 3.3260 -3.0510 11.3575 40 1 2.7642 -1.7452 5.9996 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310186436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:38 Heat of formation + Delta-G solvation = -34.195469 kcal Electronic energy + Delta-G solvation = -19450.036194 eV Core-core repulsion = 16456.879828 eV Total energy + Delta-G solvation = -2993.156366 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.78327 -39.45350 -38.35092 -35.90168 -34.20450 -32.09424 -30.56571 -29.93887 -28.40109 -28.18036 -27.18972 -24.71251 -23.30784 -22.07430 -20.11286 -19.68452 -18.92911 -17.20726 -16.95844 -16.63570 -16.37466 -16.14203 -15.92006 -15.62040 -15.43539 -15.03120 -14.63950 -14.42980 -14.11741 -13.96843 -13.48658 -13.41677 -13.08480 -12.83644 -12.65500 -12.49557 -12.35570 -12.21817 -12.17198 -11.99260 -11.91900 -11.65767 -11.28276 -10.89953 -10.58076 -9.60377 -9.09722 -8.44837 -8.22632 -6.13411 0.76856 0.92633 1.34328 1.46184 1.50992 2.19194 2.53059 2.89873 3.27383 3.50925 3.60194 3.86250 3.93818 4.19468 4.20934 4.30708 4.35728 4.40861 4.59529 4.62218 4.74616 4.75997 4.81601 4.97763 5.01377 5.05411 5.11625 5.14260 5.16461 5.19489 5.31132 5.42851 5.47512 5.75948 5.80902 6.04440 6.12170 6.29607 6.60831 6.62813 6.86777 7.00330 7.83681 8.78681 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.023843 B = 0.003947 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.074885 B = 7091.935181 C = 8065.908138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.121 3.879 3 C -0.144 4.144 4 N -0.847 5.847 5 C -0.111 4.111 6 C 0.128 3.872 7 N -0.747 5.747 8 C 0.254 3.746 9 C -0.265 4.265 10 C -0.026 4.026 11 C -0.262 4.262 12 C 0.152 3.848 13 O -0.232 6.232 14 C -0.413 4.413 15 H 0.099 0.901 16 C -0.024 4.024 17 N -0.922 5.922 18 Si 1.018 2.982 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.258 1.258 22 C -0.318 4.318 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.345 0.655 30 H 0.349 0.651 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.142 0.858 37 H 0.153 0.847 38 H 0.107 0.893 39 H 0.272 0.728 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.298 4.444 -23.530 24.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.028 3.972 3 C -0.201 4.201 4 N -0.378 5.378 5 C -0.149 4.149 6 C 0.004 3.996 7 N -0.377 5.377 8 C 0.150 3.850 9 C -0.287 4.287 10 C -0.044 4.044 11 C -0.283 4.283 12 C 0.101 3.899 13 O -0.139 6.139 14 C -0.489 4.489 15 H 0.116 0.884 16 C -0.221 4.221 17 N -0.561 5.561 18 Si 0.837 3.163 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.182 1.182 22 C -0.342 4.342 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.158 0.842 30 H 0.163 0.837 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.232 0.768 36 H 0.159 0.841 37 H 0.171 0.829 38 H 0.125 0.875 39 H 0.081 0.919 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.638 4.752 -22.999 23.765 hybrid contribution -0.311 -1.254 0.282 1.322 sum -3.950 3.498 -22.717 23.322 Atomic orbital electron populations 1.22696 0.96267 1.02251 1.02998 1.20603 0.92375 0.94378 0.89853 1.21911 1.01399 0.94402 1.02419 1.58864 1.67779 1.07074 1.04055 1.21654 1.01434 0.99393 0.92450 1.21521 0.98822 0.96269 0.82967 1.44707 1.57832 1.33192 1.01919 1.17574 0.91159 0.91718 0.84558 1.20551 1.09383 1.00636 0.98151 1.20836 0.95544 0.97579 0.90468 1.20274 1.08246 0.99958 0.99854 1.19640 0.91387 0.92239 0.86606 1.83947 1.64940 1.35620 1.29362 1.21758 1.34229 0.97515 0.95368 0.88402 1.26589 0.98643 1.03149 0.93705 1.70187 1.46449 1.40523 0.98933 0.84660 0.78226 0.75057 0.78316 1.18210 1.19501 1.18230 1.20526 1.14857 1.07318 0.91526 0.91675 0.91665 0.92622 0.92782 0.91809 0.91545 0.84172 0.83707 0.91399 0.91417 0.91746 0.91774 0.76764 0.84072 0.82936 0.87529 0.91873 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 8.41 71.98 0.61 -1.57 16 2 C 0.12 1.62 1.00 3.52 0.00 1.63 16 3 C -0.14 -1.96 8.41 71.98 0.61 -1.35 16 4 N -0.85 -10.34 8.88 -151.57 -1.35 -11.68 16 5 C -0.11 -1.86 4.64 30.59 0.14 -1.72 16 6 C 0.13 2.61 4.21 86.38 0.36 2.97 16 7 N -0.75 -20.93 5.73 -339.47 -1.95 -22.88 16 8 C 0.25 9.30 6.65 38.20 0.25 9.56 16 9 C -0.26 -8.70 9.31 22.43 0.21 -8.49 16 10 C -0.03 -0.90 10.03 22.23 0.22 -0.68 16 11 C -0.26 -11.84 9.99 22.42 0.22 -11.61 16 12 C 0.15 8.01 6.64 22.56 0.15 8.16 16 13 O -0.23 -14.58 9.76 -22.78 -0.22 -14.80 16 14 C -0.41 -24.88 9.49 67.92 0.64 -24.23 16 15 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 16 C -0.02 -1.39 5.49 84.83 0.47 -0.92 16 17 N -0.92 -58.04 13.67 21.61 0.30 -57.74 16 18 Si 1.02 43.89 29.55 68.60 2.03 45.92 16 19 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.32 -14.64 9.01 22.52 0.20 -14.44 16 23 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.89 6.43 -2.38 -0.02 0.87 16 29 H 0.35 3.69 8.98 -89.69 -0.81 2.88 16 30 H 0.35 3.26 9.00 -89.69 -0.81 2.46 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.06 1.26 6.24 -2.39 -0.01 1.25 16 34 H 0.06 1.28 6.23 -2.38 -0.01 1.27 16 35 H 0.40 10.66 8.48 -92.71 -0.79 9.88 16 36 H 0.14 3.60 6.73 -2.91 -0.02 3.58 16 37 H 0.15 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 40 H 0.11 5.30 5.64 -2.91 -0.02 5.28 16 Total: -1.00 -72.79 324.83 1.58 -71.21 By element: Atomic # 1 Polarization: 34.00 SS G_CDS: -1.32 Total: 32.67 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 4.09 Total: -42.71 kcal Atomic # 7 Polarization: -89.31 SS G_CDS: -3.00 Total: -92.30 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.22 Total: -14.80 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.79 1.58 -71.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310186436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.019 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds