Wall clock time and date at job start Mon Mar 30 2020 07:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.26959 * 59.29614 * 9 7 2 11 11 C 1.54950 * 110.30901 * 181.38473 * 9 7 2 12 12 C 1.55460 * 100.90578 * 155.20372 * 11 9 7 13 13 C 1.54237 * 102.25531 * 326.06175 * 12 11 9 14 14 C 1.52913 * 109.35218 * 261.85526 * 13 12 11 15 15 C 1.53036 * 109.41508 * 180.65313 * 14 13 12 16 16 C 1.52995 * 109.49974 * 59.98049 * 15 14 13 17 17 C 1.53045 * 109.48898 * 299.47435 * 16 15 14 18 18 C 1.52517 * 109.57541 * 141.13722 * 13 12 11 19 19 C 1.54012 * 109.85145 * 57.76619 * 18 13 12 20 20 C 1.54959 * 104.12936 * 217.19220 * 19 18 13 21 21 C 1.54910 * 102.78345 * 37.70762 * 20 19 18 22 22 C 1.53623 * 110.06430 * 300.35218 * 18 13 12 23 23 O 1.43100 * 107.74504 * 21.27935 * 13 12 11 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09000 * 111.12452 * 273.19809 * 11 9 7 26 26 H 1.08998 * 111.12392 * 37.35530 * 11 9 7 27 27 H 1.08998 * 110.88980 * 207.83884 * 12 11 9 28 28 H 1.08994 * 110.94297 * 84.31097 * 12 11 9 29 29 H 1.09000 * 109.48013 * 300.63675 * 14 13 12 30 30 H 1.09003 * 109.47919 * 60.66674 * 14 13 12 31 31 H 1.09003 * 109.46627 * 299.96968 * 15 14 13 32 32 H 1.09004 * 109.46803 * 179.97438 * 15 14 13 33 33 H 1.09002 * 109.46778 * 179.46584 * 16 15 14 34 34 H 1.08999 * 109.46442 * 59.47785 * 16 15 14 35 35 H 1.09006 * 109.46234 * 299.61630 * 17 16 15 36 36 H 1.08996 * 109.46262 * 179.63647 * 17 16 15 37 37 H 1.08998 * 110.49583 * 335.85248 * 19 18 13 38 38 H 1.08993 * 110.49709 * 98.53378 * 19 18 13 39 39 H 1.08999 * 110.74637 * 279.38559 * 20 19 18 40 40 H 1.08995 * 110.74517 * 156.03206 * 20 19 18 41 41 H 1.09002 * 110.48516 * 203.51311 * 21 20 19 42 42 H 1.09003 * 110.59966 * 80.93448 * 21 20 19 43 43 H 1.08994 * 110.05338 * 238.41091 * 22 18 13 44 44 H 1.09004 * 110.05041 * 359.84606 * 22 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6105 -2.5654 -0.8789 11 6 2.2404 -3.6912 0.0363 12 6 1.3483 -4.7948 0.6713 13 6 0.4644 -3.9837 1.6407 14 6 1.0454 -4.0741 3.0522 15 6 0.1604 -3.2832 4.0183 16 6 -1.2538 -3.8670 4.0097 17 6 -1.8396 -3.7652 2.5995 18 6 -0.9560 -4.5388 1.6230 19 6 -0.9395 -6.0303 2.0065 20 6 -2.0270 -6.6652 1.1035 21 6 -1.8570 -5.8959 -0.2303 22 6 -1.5391 -4.4496 0.2045 23 8 0.4676 -2.6227 1.1987 24 1 -0.4850 -0.8401 -0.0004 25 1 2.5565 -3.9697 -0.9690 26 1 3.0998 -3.4696 0.6690 27 1 1.9546 -5.5203 1.2136 28 1 0.7408 -5.2887 -0.0869 29 1 1.0818 -5.1178 3.3642 30 1 2.0527 -3.6575 3.0581 31 1 0.1244 -2.2394 3.7062 32 1 0.5736 -3.3474 5.0249 33 1 -1.8813 -3.3093 4.7049 34 1 -1.2166 -4.9133 4.3130 35 1 -1.8831 -2.7183 2.2989 36 1 -2.8446 -4.1871 2.5924 37 1 0.0360 -6.4681 1.7946 38 1 -1.1953 -6.1568 3.0584 39 1 -3.0203 -6.4998 1.5208 40 1 -1.8386 -7.7294 0.9622 41 1 -2.7805 -5.9262 -0.8085 42 1 -1.0317 -6.3102 -0.8095 43 1 -2.4511 -3.8527 0.2122 44 1 -0.8087 -4.0069 -0.4726 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310191708.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:45 Heat of formation + Delta-G solvation = -82.962561 kcal Electronic energy + Delta-G solvation = -22547.097036 eV Core-core repulsion = 19655.366314 eV Total energy + Delta-G solvation = -2891.730722 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58215 -36.95551 -35.04587 -32.64718 -31.17598 -29.81881 -29.43965 -28.37035 -25.92506 -23.79563 -23.12356 -21.23096 -20.61898 -20.29032 -19.69418 -17.44011 -16.93772 -15.98016 -15.39458 -14.84387 -14.33973 -13.83148 -13.69282 -13.42391 -13.23128 -13.08433 -12.77974 -12.49606 -12.15861 -11.66405 -11.26782 -11.22250 -11.02175 -10.94921 -10.86774 -10.75825 -10.74117 -10.61772 -10.37231 -10.27104 -10.26362 -10.21403 -10.02466 -9.75545 -9.39743 -9.26859 -8.70637 -8.40797 -7.82978 -6.29611 -4.06683 3.46755 3.49688 3.65043 4.56733 4.72759 4.86851 4.91296 5.13176 5.33273 5.36208 5.38845 5.52854 5.59264 5.62253 5.69816 5.77854 5.80951 5.85233 5.90249 5.90759 6.01747 6.07472 6.10918 6.15975 6.21107 6.27201 6.34040 6.36761 6.41420 6.46540 6.52353 6.57405 6.60723 6.65165 6.75467 6.77001 6.85240 6.88923 7.04210 7.04998 7.45182 8.17737 8.40659 8.71178 8.95934 9.75519 11.12338 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.023788 B = 0.007359 C = 0.006901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.798502 B = 3803.885701 C = 4056.185995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.033 3.967 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.608 4.608 8 H 0.052 0.948 9 C 0.195 3.805 10 H 0.017 0.983 11 C -0.140 4.140 12 C -0.151 4.151 13 C 0.121 3.879 14 C -0.113 4.113 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.100 4.100 18 C -0.054 4.054 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.125 4.125 22 C -0.114 4.114 23 O -0.357 6.357 24 H 0.280 0.720 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -12.094 4.239 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.175 4.175 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.645 4.645 8 H 0.071 0.929 9 C 0.140 3.860 10 H 0.035 0.965 11 C -0.178 4.178 12 C -0.188 4.188 13 C 0.080 3.920 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.138 4.138 18 C -0.054 4.054 19 C -0.155 4.155 20 C -0.160 4.160 21 C -0.162 4.162 22 C -0.151 4.151 23 O -0.277 6.277 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.851 -10.283 4.327 11.515 hybrid contribution 0.399 -1.885 -0.063 1.928 sum -2.452 -12.168 4.264 13.125 Atomic orbital electron populations 1.70631 1.06853 1.31787 1.43424 1.25767 0.96582 1.02429 0.92731 0.83577 0.74713 0.75302 0.76745 1.21453 1.21563 1.21019 1.22010 0.93783 0.91181 1.57560 0.92945 1.20649 0.87446 0.93606 0.84287 0.96530 1.23213 0.99207 0.95896 0.99469 1.23242 0.98337 0.98248 0.98995 1.21565 0.91930 0.85663 0.92862 1.21772 0.99280 0.98828 0.95207 1.21412 0.94549 1.01395 0.97750 1.21562 0.96758 0.99979 0.97006 1.21482 0.96948 1.01356 0.94003 1.21114 0.95614 0.93862 0.94829 1.22563 0.98736 0.95008 0.99229 1.22482 0.99008 0.98490 0.96017 1.22410 1.00630 0.96266 0.96914 1.22201 1.01016 0.95616 0.96303 1.88744 1.72740 1.21518 1.44662 0.90813 0.92369 0.91761 0.92117 0.91235 0.92707 0.92044 0.90676 0.93360 0.92837 0.92680 0.90820 0.93143 0.91625 0.91601 0.91921 0.92339 0.92342 0.92140 0.92075 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.25 13.57 55.43 0.75 -26.50 16 2 C 0.03 0.96 5.42 -17.82 -0.10 0.86 16 3 Si 1.07 25.56 29.90 -169.99 -5.08 20.47 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 7 C -0.61 -17.34 8.80 -34.44 -0.30 -17.64 16 8 H 0.05 1.49 7.76 -52.48 -0.41 1.08 16 9 C 0.19 4.95 2.20 -26.85 -0.06 4.89 16 10 H 0.02 0.46 7.09 -51.93 -0.37 0.10 16 11 C -0.14 -2.95 6.54 -24.39 -0.16 -3.11 16 12 C -0.15 -2.69 4.21 -24.78 -0.10 -2.80 16 13 C 0.12 2.28 0.21 -90.26 -0.02 2.26 16 14 C -0.11 -1.99 4.55 -26.76 -0.12 -2.11 16 15 C -0.11 -1.94 5.80 -26.71 -0.15 -2.10 16 16 C -0.12 -1.75 5.70 -26.71 -0.15 -1.91 16 17 C -0.10 -1.67 4.33 -26.85 -0.12 -1.79 16 18 C -0.05 -0.89 0.23 -154.04 -0.03 -0.92 16 19 C -0.12 -1.62 4.47 -25.17 -0.11 -1.73 16 20 C -0.12 -1.51 6.91 -24.69 -0.17 -1.68 16 21 C -0.12 -1.71 6.51 -25.02 -0.16 -1.87 16 22 C -0.11 -1.93 5.10 -25.71 -0.13 -2.07 16 23 O -0.36 -8.67 7.92 -35.23 -0.28 -8.95 16 24 H 0.28 8.62 6.61 -40.82 -0.27 8.35 16 25 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 26 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 27 H 0.06 0.97 7.64 -51.93 -0.40 0.57 16 28 H 0.07 1.18 5.53 -51.93 -0.29 0.90 16 29 H 0.05 0.84 7.31 -51.93 -0.38 0.46 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 1.54 7.77 -51.93 -0.40 1.13 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.75 6.21 -51.93 -0.32 0.42 16 35 H 0.07 1.47 7.87 -51.93 -0.41 1.06 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.90 6.42 -51.93 -0.33 0.56 16 38 H 0.07 0.85 5.87 -51.93 -0.30 0.55 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.81 7.51 -51.93 -0.39 0.42 16 43 H 0.06 1.06 7.66 -51.93 -0.40 0.66 16 44 H 0.07 1.42 5.08 -51.93 -0.26 1.16 16 LS Contribution 313.20 15.07 4.72 4.72 Total: -1.00 -29.82 313.20 -9.32 -39.14 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.53 Total: 2.82 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: -1.90 Total: -31.70 kcal Atomic # 7 Polarization: -27.25 SS G_CDS: 0.75 Total: -26.50 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.28 Total: -8.95 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.82 -9.32 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310191708.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.823 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds