Wall clock time and date at job start Mon Mar 30 2020 07:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46902 * 109.46680 * 2 1 4 4 C 1.46898 * 111.00018 * 193.95574 * 3 2 1 5 5 C 1.50700 * 109.47132 * 66.04524 * 4 3 2 6 6 H 1.08000 * 120.00211 * 0.02562 * 5 4 3 7 7 C 1.37882 * 119.99846 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00168 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99788 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47308 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47166 * 120.00244 * 9 7 5 12 12 H 1.48504 * 109.46912 * 240.00130 * 9 7 5 13 13 C 1.39980 * 111.00213 * 70.00049 * 3 2 1 14 14 C 1.38890 * 119.98258 * 63.97059 * 13 3 2 15 15 C 1.38440 * 119.94710 * 179.97438 * 14 13 3 16 16 O 1.36012 * 120.04004 * 180.02562 * 15 14 13 17 17 C 1.42902 * 116.99560 * 359.97438 * 16 15 14 18 18 C 1.39318 * 119.91693 * 359.97438 * 15 14 13 19 19 N 1.40295 * 120.01558 * 180.26896 * 18 15 14 20 20 C 1.38635 * 119.96936 * 359.97438 * 18 15 14 21 21 C 1.38253 * 120.05249 * 0.02562 * 20 18 15 22 22 C 1.50693 * 119.95988 * 179.97438 * 21 20 18 23 23 H 1.08999 * 109.47050 * 299.99863 * 1 2 3 24 24 H 1.08998 * 109.47059 * 60.00264 * 1 2 3 25 25 H 1.09000 * 109.46688 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47050 * 240.00137 * 2 1 3 27 27 H 1.08998 * 109.47059 * 119.99736 * 2 1 3 28 28 H 1.08999 * 109.47393 * 186.05174 * 4 3 2 29 29 H 1.09008 * 109.46799 * 306.04822 * 4 3 2 30 30 H 0.96993 * 119.99950 * 180.02562 * 8 7 5 31 31 H 1.07999 * 120.02662 * 359.96317 * 14 13 3 32 32 H 1.08991 * 109.47691 * 299.99849 * 17 16 15 33 33 H 1.09004 * 109.47175 * 60.01111 * 17 16 15 34 34 H 1.09006 * 109.46551 * 180.02562 * 17 16 15 35 35 H 0.96997 * 120.00233 * 179.72100 * 19 18 15 36 36 H 0.97000 * 119.99359 * 359.73036 * 19 18 15 37 37 H 1.07997 * 119.97177 * 179.97438 * 20 18 15 38 38 H 1.09001 * 109.46977 * 90.00086 * 22 21 20 39 39 H 1.08997 * 109.47350 * 210.00162 * 22 21 20 40 40 H 1.08999 * 109.47606 * 330.00232 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4499 1.4378 -0.3307 5 6 3.6535 0.9856 -1.7538 6 1 2.8051 0.6891 -2.3528 7 6 4.9228 0.9505 -2.2911 8 7 5.9559 1.3111 -1.5616 9 14 5.1750 0.3906 -4.0553 10 1 3.8627 0.0418 -4.6564 11 1 5.8016 1.4863 -4.8376 12 1 6.0612 -0.8009 -4.0746 13 6 1.7654 2.0070 1.2280 14 6 2.3719 1.5337 2.3844 15 6 2.1204 2.1498 3.5984 16 8 2.7136 1.6882 4.7320 17 6 3.5845 0.5634 4.5965 18 6 1.2597 3.2437 3.6574 19 7 1.0077 3.8730 4.8857 20 6 0.6570 3.7139 2.5008 21 6 0.9091 3.0977 1.2891 22 6 0.2525 3.6102 0.0333 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8112 2.4601 -0.2191 29 1 4.0028 0.7817 0.3416 30 1 6.8488 1.2867 -1.9397 31 1 3.0390 0.6858 2.3366 32 1 3.0267 -0.2816 4.1930 33 1 4.4015 0.8157 3.9204 34 1 3.9896 0.2978 5.5730 35 1 0.4116 4.6371 4.9259 36 1 1.4298 3.5440 5.6947 37 1 -0.0105 4.5616 2.5465 38 1 0.8882 4.3669 -0.4263 39 1 0.1079 2.7849 -0.6639 40 1 -0.7137 4.0494 0.2816 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310217950.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:41 Heat of formation + Delta-G solvation = -30.577773 kcal Electronic energy + Delta-G solvation = -20649.034358 eV Core-core repulsion = 17656.034867 eV Total energy + Delta-G solvation = -2992.999491 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.40316 -39.36642 -37.66704 -35.18982 -34.42269 -32.51677 -31.55546 -29.69985 -28.74181 -27.97629 -26.17066 -24.26961 -23.87128 -22.19644 -21.25849 -18.96211 -18.41097 -17.96515 -17.13186 -16.88609 -16.61750 -16.27681 -15.80496 -15.61371 -15.10394 -15.00458 -14.36223 -14.25699 -14.19056 -14.06793 -13.39385 -13.31419 -12.90249 -12.78057 -12.70025 -12.53143 -12.40564 -12.32377 -12.12480 -11.97726 -11.93803 -11.74303 -11.29621 -10.90009 -10.62861 -9.30147 -9.09480 -8.21822 -8.00654 -6.30472 0.47692 0.65114 1.41245 1.42185 1.56018 2.36758 2.40701 2.86674 3.06308 3.12584 3.32228 3.90337 4.16685 4.27717 4.28664 4.30446 4.47351 4.49899 4.60642 4.66068 4.70303 4.77690 4.90272 5.02236 5.04643 5.09734 5.13981 5.15078 5.26660 5.32536 5.45315 5.49557 5.66835 5.86361 5.96671 6.11635 6.23494 6.30698 6.69165 6.85901 6.96994 7.13748 7.39291 8.91455 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020791 B = 0.005908 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.414911 B = 4737.986305 C = 5224.581719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.060 3.940 3 N -0.493 5.493 4 C 0.222 3.778 5 C -0.519 4.519 6 H 0.067 0.933 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.971 3.029 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.279 1.279 13 C 0.060 3.940 14 C -0.199 4.199 15 C 0.038 3.962 16 O -0.329 6.329 17 C 0.030 3.970 18 C 0.185 3.815 19 N -0.865 5.865 20 C -0.161 4.161 21 C -0.062 4.062 22 C -0.094 4.094 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.012 0.988 28 H -0.008 1.008 29 H -0.040 1.040 30 H 0.264 0.736 31 H 0.105 0.895 32 H 0.049 0.951 33 H 0.036 0.964 34 H 0.129 0.871 35 H 0.409 0.591 36 H 0.404 0.596 37 H 0.159 0.841 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.651 2.093 11.261 16.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.066 4.066 3 N -0.215 5.215 4 C 0.097 3.903 5 C -0.557 4.557 6 H 0.086 0.914 7 C -0.197 4.197 8 N -0.577 5.577 9 Si 0.795 3.205 10 H -0.184 1.184 11 H -0.205 1.205 12 H -0.205 1.205 13 C -0.036 4.036 14 C -0.220 4.220 15 C -0.011 4.011 16 O -0.243 6.243 17 C -0.064 4.064 18 C 0.081 3.919 19 N -0.408 5.408 20 C -0.185 4.185 21 C -0.063 4.063 22 C -0.151 4.151 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.031 0.969 28 H 0.011 0.989 29 H -0.023 1.023 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.148 0.852 35 H 0.239 0.761 36 H 0.232 0.768 37 H 0.176 0.824 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.733 2.396 11.031 16.282 hybrid contribution 1.602 -0.906 -0.048 1.842 sum -10.131 1.490 10.983 15.016 Atomic orbital electron populations 1.21646 0.93255 1.01803 1.01860 1.22051 0.96809 0.88220 0.99554 1.59844 1.18282 1.16750 1.26604 1.19281 0.82313 0.93713 0.94963 1.21487 0.92988 1.43444 0.97791 0.91445 1.25936 0.95557 0.95492 1.02687 1.70114 0.99416 1.49524 1.38670 0.85308 0.78504 0.77778 0.78869 1.18394 1.20529 1.20490 1.18681 0.99143 0.97573 0.88204 1.21542 1.04179 1.02848 0.93463 1.18415 0.99609 0.97499 0.85582 1.85855 1.60202 1.48415 1.29828 1.23098 0.92087 0.86554 1.04702 1.17173 0.94825 0.91266 0.88636 1.42188 1.55813 1.37274 1.05549 1.20480 1.05197 1.03438 0.89352 1.19752 0.96608 0.93893 0.96089 1.20559 0.99449 1.00949 0.94111 0.93298 0.92029 0.91010 0.91488 0.96941 0.98942 1.02282 0.92766 0.87656 0.93187 0.94509 0.85250 0.76069 0.76773 0.82361 0.92537 0.91633 0.89819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.80 71.98 0.71 -3.37 16 2 C 0.06 2.46 5.45 86.31 0.47 2.93 16 3 N -0.49 -22.39 3.39 -699.38 -2.37 -24.76 16 4 C 0.22 12.39 4.31 85.56 0.37 12.75 16 5 C -0.52 -29.84 8.31 25.60 0.21 -29.62 16 6 H 0.07 3.77 7.23 -2.91 -0.02 3.75 16 7 C 0.00 0.06 5.46 84.66 0.46 0.52 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 9 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 C 0.06 2.46 3.73 38.13 0.14 2.60 16 14 C -0.20 -7.91 7.52 22.47 0.17 -7.74 16 15 C 0.04 1.29 6.70 22.58 0.15 1.45 16 16 O -0.33 -10.09 9.74 -93.69 -0.91 -11.01 16 17 C 0.03 0.80 9.81 113.37 1.11 1.92 16 18 C 0.19 5.45 6.77 38.14 0.26 5.71 16 19 N -0.87 -18.17 9.11 -50.90 -0.46 -18.63 16 20 C -0.16 -4.61 9.54 22.37 0.21 -4.40 16 21 C -0.06 -2.13 5.90 -19.73 -0.12 -2.25 16 22 C -0.09 -2.88 9.76 71.23 0.70 -2.19 16 23 H 0.05 1.54 7.52 -2.39 -0.02 1.52 16 24 H 0.06 1.92 7.88 -2.39 -0.02 1.90 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.07 2.94 6.60 -2.39 -0.02 2.93 16 27 H 0.01 0.51 7.07 -2.39 -0.02 0.49 16 28 H -0.01 -0.47 8.06 -2.39 -0.02 -0.49 16 29 H -0.04 -2.45 7.47 -2.38 -0.02 -2.47 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 31 H 0.11 4.46 5.37 -2.91 -0.02 4.44 16 32 H 0.05 1.31 7.66 -2.39 -0.02 1.29 16 33 H 0.04 1.10 7.66 -2.39 -0.02 1.08 16 34 H 0.13 2.41 8.14 -2.38 -0.02 2.39 16 35 H 0.41 6.10 8.85 -92.71 -0.82 5.28 16 36 H 0.40 7.99 8.19 -92.71 -0.76 7.23 16 37 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.06 2.21 7.04 -2.39 -0.02 2.19 16 40 H 0.08 1.93 8.08 -2.39 -0.02 1.91 16 Total: -1.00 -69.05 324.91 2.88 -66.17 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.53 Total: 20.46 kcal Atomic # 6 Polarization: -26.53 SS G_CDS: 4.84 Total: -21.69 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -2.55 Total: -100.64 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.91 Total: -11.01 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.05 2.88 -66.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310217950.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.590 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds