Wall clock time and date at job start Mon Mar 30 2020 06:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47417 * 2 1 4 4 N 1.46501 * 109.46927 * 119.99476 * 2 1 3 5 5 C 1.34950 * 126.04272 * 275.26078 * 4 2 1 6 6 C 1.35311 * 107.74873 * 180.14664 * 5 4 2 7 7 C 1.50696 * 126.03933 * 179.87601 * 6 5 4 8 8 H 1.08995 * 110.35371 * 24.02316 * 7 6 5 9 9 C 1.54949 * 110.30994 * 261.87713 * 7 6 5 10 10 C 1.55299 * 100.94567 * 204.64034 * 9 7 6 11 11 C 1.54388 * 102.25357 * 34.13345 * 10 9 7 12 12 C 1.52997 * 109.90506 * 98.19773 * 11 10 9 13 13 C 1.50696 * 109.83122 * 219.13035 * 11 10 9 14 14 H 1.07993 * 120.00298 * 353.93374 * 13 11 10 15 15 C 1.37876 * 119.99825 * 173.93223 * 13 11 10 16 16 N 1.31519 * 120.00046 * 354.63262 * 15 13 11 17 17 Si 1.86801 * 120.00075 * 174.62986 * 15 13 11 18 18 H 1.48499 * 109.46833 * 265.20872 * 17 15 13 19 19 H 1.48499 * 109.46884 * 25.20715 * 17 15 13 20 20 H 1.48497 * 109.47438 * 145.20977 * 17 15 13 21 21 O 1.43243 * 107.58586 * 338.64650 * 11 10 9 22 22 C 1.39877 * 107.91969 * 359.61132 * 6 5 4 23 23 N 1.30836 * 108.20161 * 0.23905 * 22 6 5 24 24 H 1.08997 * 109.47488 * 300.00495 * 1 2 3 25 25 H 1.09007 * 109.46556 * 60.00410 * 1 2 3 26 26 H 1.08994 * 109.47236 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47488 * 239.99504 * 2 1 3 28 28 H 1.08999 * 109.47404 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46453 * 299.99593 * 3 2 1 30 30 H 1.08997 * 109.47196 * 59.99326 * 3 2 1 31 31 H 1.08000 * 126.12087 * 0.02562 * 5 4 2 32 32 H 1.08998 * 111.12553 * 322.56708 * 9 7 6 33 33 H 1.08999 * 111.12360 * 86.67579 * 9 7 6 34 34 H 1.08996 * 110.84765 * 275.94820 * 10 9 7 35 35 H 1.08998 * 110.84802 * 152.32285 * 10 9 7 36 36 H 1.08998 * 109.47422 * 186.16633 * 12 11 10 37 37 H 1.09004 * 109.47362 * 306.16833 * 12 11 10 38 38 H 1.09004 * 109.47126 * 66.16699 * 12 11 10 39 39 H 0.96995 * 119.99941 * 179.97438 * 16 15 13 40 40 H 1.07999 * 125.89848 * 180.26733 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1886 -0.1404 2.4167 6 6 2.6566 -1.1049 3.2423 7 6 2.9923 -0.9367 4.7017 8 1 2.4386 -0.0981 5.1238 9 6 4.5160 -0.7202 4.8816 10 6 4.7137 -1.2137 6.3407 11 6 3.6804 -2.3562 6.4431 12 6 4.3708 -3.7040 6.2248 13 6 3.0241 -2.3319 7.7994 14 1 3.3746 -1.6464 8.5568 15 6 1.9761 -3.1848 8.0734 16 7 1.4799 -3.9442 7.1211 17 14 1.2608 -3.2619 9.7974 18 1 1.9010 -4.3706 10.5497 19 1 1.5157 -1.9770 10.4969 20 1 -0.2028 -3.4994 9.7159 21 8 2.6972 -2.1431 5.4235 22 6 2.7680 -2.2872 2.5032 23 7 2.3856 -2.0400 1.2766 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.9891 0.8864 2.6857 32 1 5.0850 -1.3302 4.1800 33 1 4.7773 0.3335 4.7837 34 1 4.4865 -0.4203 7.0527 35 1 5.7255 -1.5912 6.4888 36 1 3.6213 -4.4946 6.1893 37 1 4.9208 -3.6823 5.2839 38 1 5.0621 -3.8953 7.0455 39 1 0.7429 -4.5445 7.3140 40 1 3.1101 -3.2398 2.8800 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310382384.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:50 Heat of formation + Delta-G solvation = 9.046484 kcal Electronic energy + Delta-G solvation = -20544.957095 eV Core-core repulsion = 17553.675841 eV Total energy + Delta-G solvation = -2991.281254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18511 -39.86704 -36.64938 -34.85308 -32.65967 -32.43901 -31.08950 -29.99888 -28.19303 -27.23290 -26.01532 -23.71437 -22.85792 -21.24577 -20.89256 -20.72844 -18.33900 -17.77834 -16.89844 -16.33596 -16.17608 -15.71474 -15.52019 -15.12860 -14.86075 -14.27487 -13.87829 -13.79376 -13.72019 -13.40733 -13.17135 -13.03261 -13.00664 -12.78861 -12.72595 -12.45385 -12.27877 -12.25222 -12.06808 -12.00016 -11.75414 -11.41426 -11.16849 -10.78656 -10.52566 -10.26230 -9.70842 -9.12826 -7.94853 -6.16044 0.99146 1.43045 1.44344 1.53823 1.66398 1.88281 2.48394 3.22769 3.51657 3.78339 3.95423 4.02332 4.07571 4.09921 4.13274 4.34488 4.44874 4.59095 4.64776 4.67410 4.78378 4.83460 4.86207 4.90128 4.98969 5.01662 5.09631 5.14093 5.19383 5.24097 5.25109 5.36046 5.43552 5.60005 5.73431 5.80264 6.10632 6.25595 6.41468 6.75008 6.81769 7.30132 7.60191 9.07184 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.028002 B = 0.005032 C = 0.004749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.675890 B = 5562.736958 C = 5894.224501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 C -0.156 4.156 4 N -0.367 5.367 5 C 0.067 3.933 6 C -0.241 4.241 7 C 0.145 3.855 8 H 0.051 0.949 9 C -0.128 4.128 10 C -0.137 4.137 11 C 0.212 3.788 12 C -0.123 4.123 13 C -0.555 4.555 14 H 0.055 0.945 15 C 0.033 3.967 16 N -0.885 5.885 17 Si 0.943 3.057 18 H -0.276 1.276 19 H -0.267 1.267 20 H -0.289 1.289 21 O -0.369 6.369 22 C 0.057 3.943 23 N -0.332 5.332 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.041 0.959 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.073 0.927 31 H 0.203 0.797 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.032 0.968 38 H 0.043 0.957 39 H 0.253 0.747 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.805 12.155 -13.341 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.046 3.954 3 C -0.214 4.214 4 N -0.150 5.150 5 C -0.080 4.080 6 C -0.252 4.252 7 C 0.085 3.915 8 H 0.068 0.932 9 C -0.166 4.166 10 C -0.175 4.175 11 C 0.174 3.826 12 C -0.181 4.181 13 C -0.593 4.593 14 H 0.073 0.927 15 C -0.170 4.170 16 N -0.522 5.522 17 Si 0.769 3.231 18 H -0.201 1.201 19 H -0.192 1.192 20 H -0.215 1.215 21 O -0.288 6.288 22 C -0.128 4.128 23 N -0.154 5.154 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.060 0.940 27 H 0.119 0.881 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.092 0.908 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.272 11.461 -14.742 18.716 hybrid contribution -0.342 -0.309 2.031 2.082 sum 0.930 11.152 -12.711 16.935 Atomic orbital electron populations 1.22229 0.93051 1.02238 1.04315 1.21619 0.95337 0.93988 0.84504 1.22184 1.01934 0.92125 1.05195 1.49092 1.50129 1.06547 1.09238 1.22428 0.99977 1.00427 0.85118 1.20236 1.13862 0.94253 0.96890 1.20926 0.94388 0.89384 0.86776 0.93151 1.23127 0.95416 1.02009 0.96000 1.23121 0.99473 0.98541 0.96322 1.19735 0.85312 0.91291 0.86262 1.21771 0.98369 1.00110 0.97837 1.21697 1.18149 1.21121 0.98323 0.92674 1.25714 0.96691 0.95063 0.99487 1.70236 1.24494 1.24661 1.32795 0.85803 0.77340 0.78564 0.81383 1.20126 1.19153 1.21531 1.88759 1.51385 1.40396 1.48278 1.23597 0.99070 0.99590 0.90513 1.77210 1.22625 0.95061 1.20528 0.92079 0.87499 0.94015 0.88134 0.92032 0.87396 0.90832 0.78062 0.91569 0.88911 0.91915 0.90867 0.94233 0.94929 0.93767 0.93761 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 9.52 71.98 0.69 -2.01 16 2 C 0.15 2.74 3.93 44.99 0.18 2.92 16 3 C -0.16 -1.86 8.84 71.98 0.64 -1.22 16 4 N -0.37 -10.56 3.52 -327.50 -1.15 -11.72 16 5 C 0.07 1.97 10.50 83.54 0.88 2.85 16 6 C -0.24 -8.99 5.19 -20.14 -0.10 -9.10 16 7 C 0.14 5.95 3.90 30.51 0.12 6.07 16 8 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 9 C -0.13 -4.48 6.56 32.05 0.21 -4.27 16 10 C -0.14 -5.52 6.07 31.85 0.19 -5.33 16 11 C 0.21 10.67 0.82 -11.07 -0.01 10.66 16 12 C -0.12 -6.04 8.50 71.98 0.61 -5.43 16 13 C -0.56 -30.98 8.16 25.60 0.21 -30.78 16 14 H 0.06 3.01 7.58 -2.91 -0.02 2.99 16 15 C 0.03 1.87 5.25 84.65 0.44 2.32 16 16 N -0.89 -53.40 11.27 21.45 0.24 -53.15 16 17 Si 0.94 44.52 29.54 68.60 2.03 46.55 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 21 O -0.37 -19.35 9.12 -148.98 -1.36 -20.71 16 22 C 0.06 2.28 11.65 85.24 0.99 3.27 16 23 N -0.33 -12.21 12.58 -57.02 -0.72 -12.93 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 25 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.07 0.80 7.16 -2.39 -0.02 0.79 16 31 H 0.20 4.22 7.27 -2.91 -0.02 4.20 16 32 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 33 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.06 2.51 7.69 -2.39 -0.02 2.49 16 35 H 0.07 2.68 7.82 -2.39 -0.02 2.67 16 36 H 0.04 2.17 6.86 -2.39 -0.02 2.16 16 37 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 2.03 8.14 -2.38 -0.02 2.02 16 39 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.17 6.90 8.06 -2.91 -0.02 6.87 16 Total: -1.00 -70.68 326.45 5.08 -65.60 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 1.00 Total: 16.41 kcal Atomic # 6 Polarization: -35.09 SS G_CDS: 5.04 Total: -30.05 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.63 Total: -77.80 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -1.36 Total: -20.71 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.68 5.08 -65.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310382384.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.642 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds