Wall clock time and date at job start Mon Mar 30 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 N 1.46502 * 109.46700 * 119.99608 * 2 1 3 5 5 C 1.34953 * 126.03718 * 275.00219 * 4 2 1 6 6 C 1.35312 * 107.74266 * 180.24977 * 5 4 2 7 7 C 1.50703 * 126.03521 * 179.76875 * 6 5 4 8 8 H 1.08999 * 109.48235 * 25.02221 * 7 6 5 9 9 C 1.53098 * 109.47920 * 264.99912 * 7 6 5 10 10 C 1.53183 * 109.16037 * 182.41062 * 9 7 6 11 11 C 1.53180 * 109.03690 * 56.97982 * 10 9 7 12 12 C 1.53089 * 109.16460 * 303.01962 * 11 10 9 13 13 H 1.09008 * 109.48073 * 297.61552 * 12 11 10 14 14 C 1.50696 * 109.47950 * 177.59444 * 12 11 10 15 15 H 1.08000 * 120.00242 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99569 * 180.02562 * 14 12 11 17 17 N 1.31513 * 120.00503 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99550 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47285 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47253 * 120.00031 * 18 16 14 21 21 H 1.48507 * 109.47046 * 239.99554 * 18 16 14 22 22 O 1.42898 * 109.41512 * 57.60819 * 12 11 10 23 23 C 1.39863 * 107.92527 * 359.64076 * 6 5 4 24 24 N 1.30837 * 108.19940 * 0.36269 * 23 6 5 25 25 H 1.09001 * 109.46928 * 300.00580 * 1 2 3 26 26 H 1.09000 * 109.46477 * 60.00400 * 1 2 3 27 27 H 1.08997 * 109.46923 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47202 * 239.99064 * 2 1 3 29 29 H 1.09000 * 109.46862 * 299.99636 * 3 2 1 30 30 H 1.08992 * 109.47183 * 59.99332 * 3 2 1 31 31 H 1.09000 * 109.46904 * 180.02562 * 3 2 1 32 32 H 1.08002 * 126.12372 * 359.97438 * 5 4 2 33 33 H 1.09001 * 109.52219 * 302.31081 * 9 7 6 34 34 H 1.08997 * 109.52246 * 62.50708 * 9 7 6 35 35 H 1.09003 * 109.54140 * 176.84585 * 10 9 7 36 36 H 1.09000 * 109.54442 * 297.02520 * 10 9 7 37 37 H 1.09002 * 109.52110 * 62.92959 * 11 10 9 38 38 H 1.09001 * 109.52163 * 183.05067 * 11 10 9 39 39 H 0.97001 * 120.00196 * 180.02562 * 17 16 14 40 40 H 1.08001 * 125.90034 * 180.14354 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1932 -0.1391 2.4155 6 6 2.6615 -1.1036 3.2410 7 6 3.0039 -0.9336 4.6987 8 1 2.4342 -0.1009 5.1112 9 6 4.5012 -0.6483 4.8416 10 6 4.8521 -0.5366 6.3285 11 6 4.4361 -1.8286 7.0385 12 6 2.9413 -2.0683 6.8107 13 1 2.3708 -1.2506 7.2512 14 6 2.5367 -3.3684 7.4565 15 1 3.2717 -3.9645 7.9770 16 6 1.2284 -3.7973 7.3820 17 7 0.3336 -3.0716 6.7478 18 14 0.7271 -5.4092 8.1819 19 1 1.9113 -6.0312 8.8268 20 1 -0.3161 -5.1499 9.2065 21 1 0.1874 -6.3282 7.1477 22 8 2.6788 -2.1312 5.4075 23 6 2.7690 -2.2869 2.5030 24 7 2.3866 -2.0397 1.2765 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5140 -0.8899 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.9988 0.8890 2.6832 33 1 5.0714 -1.4617 4.3930 34 1 4.7432 0.2881 4.3389 35 1 5.9264 -0.3892 6.4395 36 1 4.3209 0.3087 6.7660 37 1 5.0051 -2.6658 6.6342 38 1 4.6326 -1.7367 8.1067 39 1 -0.5869 -3.3732 6.6957 40 1 3.1121 -3.2392 2.8797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310419268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:03 Heat of formation + Delta-G solvation = -2.752512 kcal Electronic energy + Delta-G solvation = -20453.574798 eV Core-core repulsion = 17461.781901 eV Total energy + Delta-G solvation = -2991.792897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.20326 -39.65973 -36.66366 -34.90335 -34.01305 -32.77281 -31.13135 -29.96049 -28.20894 -27.35644 -25.10039 -23.90055 -23.19254 -21.47436 -20.88244 -20.50258 -18.65874 -17.80265 -16.62010 -16.38598 -16.21152 -15.90875 -15.65997 -15.25145 -15.11525 -14.78480 -14.38646 -14.06578 -13.74445 -13.64050 -13.23383 -13.08295 -12.96559 -12.86565 -12.66242 -12.44654 -12.32146 -12.19917 -12.03691 -11.84956 -11.75258 -11.60046 -11.12273 -10.80959 -10.50240 -10.27556 -9.75654 -9.15178 -8.10966 -6.30578 0.97230 1.40480 1.42727 1.54600 1.64769 1.87855 2.42899 3.07817 3.47983 3.76661 3.94241 4.01863 4.11393 4.12098 4.22049 4.22914 4.28416 4.51899 4.55525 4.58097 4.65378 4.74364 4.81858 4.86674 4.92474 4.99553 5.02483 5.12060 5.18794 5.21018 5.24627 5.31068 5.36865 5.40872 5.64276 5.73115 5.83437 6.23567 6.27577 6.72579 6.79369 7.32698 7.47054 8.96531 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.005620 C = 0.004756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.329053 B = 4981.283127 C = 5886.314732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 C -0.156 4.156 4 N -0.366 5.366 5 C 0.067 3.933 6 C -0.236 4.236 7 C 0.157 3.843 8 H 0.033 0.967 9 C -0.127 4.127 10 C -0.115 4.115 11 C -0.137 4.137 12 C 0.217 3.783 13 H -0.021 1.021 14 C -0.549 4.549 15 H 0.064 0.936 16 C 0.026 3.974 17 N -0.896 5.896 18 Si 0.957 3.043 19 H -0.261 1.261 20 H -0.275 1.275 21 H -0.284 1.284 22 O -0.379 6.379 23 C 0.057 3.943 24 N -0.332 5.332 25 H 0.058 0.942 26 H 0.108 0.892 27 H 0.040 0.960 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.201 0.799 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.259 0.741 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 11.456 -12.137 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.214 4.214 4 N -0.149 5.149 5 C -0.080 4.080 6 C -0.247 4.247 7 C 0.097 3.903 8 H 0.051 0.949 9 C -0.165 4.165 10 C -0.152 4.152 11 C -0.175 4.175 12 C 0.161 3.839 13 H -0.003 1.003 14 C -0.586 4.586 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.533 5.533 18 Si 0.782 3.218 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.210 1.210 22 O -0.299 6.299 23 C -0.127 4.127 24 N -0.154 5.154 25 H 0.077 0.923 26 H 0.126 0.874 27 H 0.059 0.941 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.218 0.782 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.490 10.895 -13.592 17.765 hybrid contribution -0.407 -0.683 1.539 1.732 sum 3.082 10.212 -12.052 16.095 Atomic orbital electron populations 1.22234 0.93156 1.02197 1.04283 1.21632 0.95271 0.94051 0.84479 1.22184 1.01987 0.92059 1.05187 1.49077 1.50045 1.06545 1.09251 1.22389 0.99931 1.00372 0.85266 1.20008 1.13872 0.94338 0.96483 1.20022 0.94013 0.88884 0.87357 0.94915 1.22056 0.95735 1.01972 0.96693 1.21613 1.01558 0.97012 0.95038 1.22110 0.97762 0.97626 0.99971 1.19545 0.90272 0.95057 0.79050 1.00316 1.21482 0.94585 1.08309 1.34239 0.91821 1.25897 0.96706 1.00256 0.94770 1.70193 1.02598 1.39075 1.41421 0.85537 0.78513 0.79590 0.78143 1.18525 1.20055 1.21005 1.88250 1.85785 1.34298 1.21540 1.23611 0.99018 0.99598 0.90499 1.77196 1.22603 0.95067 1.20510 0.92260 0.87358 0.94099 0.87984 0.87305 0.90947 0.91907 0.78205 0.92561 0.89741 0.89960 0.92183 0.93128 0.92010 0.93256 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.52 71.98 0.69 -2.25 16 2 C 0.15 2.90 3.93 44.99 0.18 3.07 16 3 C -0.16 -1.98 8.83 71.98 0.64 -1.34 16 4 N -0.37 -11.02 3.53 -327.48 -1.15 -12.18 16 5 C 0.07 2.08 10.50 83.54 0.88 2.96 16 6 C -0.24 -9.18 5.16 -20.15 -0.10 -9.29 16 7 C 0.16 6.61 3.09 29.88 0.09 6.70 16 8 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 9 C -0.13 -4.36 5.40 30.69 0.17 -4.19 16 10 C -0.11 -3.89 6.03 30.72 0.19 -3.70 16 11 C -0.14 -5.82 5.36 30.68 0.16 -5.66 16 12 C 0.22 11.59 2.50 29.88 0.07 11.67 16 13 H -0.02 -1.21 8.14 -2.38 -0.02 -1.23 16 14 C -0.55 -31.93 8.79 25.60 0.23 -31.71 16 15 H 0.06 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.03 1.52 5.40 84.66 0.46 1.98 16 17 N -0.90 -55.38 12.84 21.45 0.28 -55.11 16 18 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 19 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 21 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 22 O -0.38 -20.32 9.15 -148.98 -1.36 -21.68 16 23 C 0.06 2.37 11.63 85.23 0.99 3.36 16 24 N -0.33 -12.59 12.58 -57.03 -0.72 -13.31 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.11 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.87 7.16 -2.39 -0.02 0.85 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.20 4.55 7.26 -2.91 -0.02 4.53 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.17 7.11 8.06 -2.91 -0.02 7.08 16 Total: -1.00 -73.12 327.60 4.69 -68.43 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 0.99 Total: 14.92 kcal Atomic # 6 Polarization: -33.02 SS G_CDS: 4.63 Total: -28.39 kcal Atomic # 7 Polarization: -79.00 SS G_CDS: -1.60 Total: -80.60 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -1.36 Total: -21.68 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -73.12 4.69 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310419268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.677 kcal (2) G-P(sol) polarization free energy of solvation -73.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds