Wall clock time and date at job start Mon Mar 30 2020 06:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47002 * 2 1 4 4 N 1.46497 * 109.47170 * 120.00147 * 2 1 3 5 5 C 1.34947 * 126.04254 * 275.00071 * 4 2 1 6 6 C 1.35312 * 107.74936 * 180.02562 * 5 4 2 7 7 C 1.50697 * 126.04029 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47897 * 340.02341 * 7 6 5 9 9 C 1.53094 * 109.48349 * 100.05099 * 7 6 5 10 10 C 1.53175 * 109.16661 * 177.58924 * 9 7 6 11 11 C 1.53176 * 109.03666 * 303.02385 * 10 9 7 12 12 C 1.53089 * 109.16219 * 56.97677 * 11 10 9 13 13 H 1.09002 * 109.47970 * 62.37821 * 12 11 10 14 14 C 1.50703 * 109.47799 * 182.39345 * 12 11 10 15 15 H 1.07999 * 120.00308 * 0.02562 * 14 12 11 16 16 C 1.37873 * 119.99885 * 179.97438 * 14 12 11 17 17 N 1.31517 * 120.00574 * 0.02562 * 16 14 12 18 18 Si 1.86807 * 120.00051 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46868 * 60.00162 * 18 16 14 20 20 H 1.48501 * 109.47281 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46854 * 300.00120 * 18 16 14 22 22 O 1.42897 * 109.41656 * 302.39053 * 12 11 10 23 23 C 1.39866 * 107.91810 * 0.25713 * 6 5 4 24 24 N 1.30837 * 108.20405 * 359.55951 * 23 6 5 25 25 H 1.08998 * 109.47173 * 59.99712 * 1 2 3 26 26 H 1.09005 * 109.47183 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47050 * 299.99959 * 1 2 3 28 28 H 1.08999 * 109.46643 * 240.00326 * 2 1 3 29 29 H 1.09003 * 109.47007 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47392 * 300.00154 * 3 2 1 31 31 H 1.08999 * 109.47155 * 60.00640 * 3 2 1 32 32 H 1.07999 * 126.12012 * 0.03874 * 5 4 2 33 33 H 1.09004 * 109.51815 * 57.68385 * 9 7 6 34 34 H 1.09006 * 109.52300 * 297.49843 * 9 7 6 35 35 H 1.08997 * 109.54332 * 183.14837 * 10 9 7 36 36 H 1.09004 * 109.53853 * 62.89066 * 10 9 7 37 37 H 1.08997 * 109.51782 * 176.88435 * 11 10 9 38 38 H 1.08995 * 109.52112 * 297.07021 * 11 10 9 39 39 H 0.96994 * 120.00822 * 179.97438 * 17 16 14 40 40 H 1.08010 * 125.89753 * 179.73940 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1933 -0.1394 2.4154 6 6 2.6570 -1.1052 3.2420 7 6 2.9926 -0.9372 4.7015 8 1 3.1504 0.1192 4.9189 9 6 1.8377 -1.4672 5.5553 10 6 2.2113 -1.3485 7.0360 11 6 3.5160 -2.1114 7.2849 12 6 4.6060 -1.5564 6.3643 13 1 4.7850 -0.5081 6.6037 14 6 5.8776 -2.3410 6.5612 15 1 5.9059 -3.1542 7.2713 16 6 7.0045 -2.0212 5.8341 17 7 6.9701 -1.0311 4.9690 18 14 8.5805 -2.9941 6.0777 19 1 8.3361 -4.4220 5.7511 20 1 9.6374 -2.4564 5.1838 21 1 9.0205 -2.8778 7.4912 22 8 4.1820 -1.6690 5.0043 23 6 2.7749 -2.2856 2.5011 24 7 2.3866 -2.0398 1.2761 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.9980 0.8884 2.6834 33 1 1.6527 -2.5128 5.3090 34 1 0.9400 -0.8812 5.3579 35 1 1.4167 -1.7755 7.6479 36 1 2.3478 -0.2984 7.2945 37 1 3.8185 -1.9860 8.3245 38 1 3.3650 -3.1699 7.0736 39 1 7.7630 -0.8059 4.4578 40 1 3.1233 -3.2367 2.8762 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310419270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:05 Heat of formation + Delta-G solvation = -2.639412 kcal Electronic energy + Delta-G solvation = -20447.136358 eV Core-core repulsion = 17455.348366 eV Total energy + Delta-G solvation = -2991.787993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.20494 -39.66056 -36.66637 -34.89918 -34.01266 -32.76708 -31.13649 -29.96271 -28.20859 -27.35272 -25.09667 -23.87263 -23.22753 -21.48576 -20.90260 -20.46728 -18.65189 -17.81606 -16.62454 -16.41283 -16.15589 -15.93635 -15.64997 -15.18716 -15.12978 -14.82771 -14.46276 -13.98396 -13.74152 -13.67350 -13.15355 -13.08529 -13.00592 -12.81632 -12.69228 -12.42750 -12.33478 -12.22842 -12.03997 -11.86310 -11.75487 -11.58994 -11.12906 -10.79618 -10.50248 -10.27665 -9.74658 -9.16507 -8.10383 -6.30241 0.97273 1.41561 1.44994 1.51911 1.64172 1.87302 2.43323 3.08677 3.47333 3.76759 3.94392 4.02231 4.11209 4.11610 4.22095 4.23520 4.28452 4.50515 4.56294 4.58590 4.65916 4.74744 4.80599 4.86979 4.92679 4.98612 5.02289 5.11884 5.18866 5.21584 5.24004 5.31024 5.36886 5.40924 5.64039 5.73133 5.83527 6.22960 6.27756 6.72485 6.79045 7.32788 7.47340 8.96779 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.021625 B = 0.005511 C = 0.004761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.476578 B = 5079.638260 C = 5879.394329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 C -0.160 4.160 4 N -0.366 5.366 5 C 0.067 3.933 6 C -0.235 4.235 7 C 0.157 3.843 8 H 0.033 0.967 9 C -0.127 4.127 10 C -0.115 4.115 11 C -0.137 4.137 12 C 0.217 3.783 13 H -0.021 1.021 14 C -0.551 4.551 15 H 0.064 0.936 16 C 0.027 3.973 17 N -0.896 5.896 18 Si 0.957 3.043 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.263 1.263 22 O -0.379 6.379 23 C 0.057 3.943 24 N -0.331 5.331 25 H 0.105 0.895 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.074 0.926 32 H 0.200 0.800 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.259 0.741 40 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.159 5.821 -7.283 16.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 C -0.218 4.218 4 N -0.149 5.149 5 C -0.080 4.080 6 C -0.247 4.247 7 C 0.097 3.903 8 H 0.051 0.949 9 C -0.165 4.165 10 C -0.152 4.152 11 C -0.175 4.175 12 C 0.161 3.839 13 H -0.003 1.003 14 C -0.589 4.589 15 H 0.082 0.918 16 C -0.176 4.176 17 N -0.533 5.533 18 Si 0.781 3.219 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.187 1.187 22 O -0.299 6.299 23 C -0.127 4.127 24 N -0.153 5.153 25 H 0.123 0.877 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.216 0.784 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.206 5.399 -8.860 17.592 hybrid contribution 1.283 -0.158 1.097 1.696 sum -12.923 5.241 -7.763 15.960 Atomic orbital electron populations 1.22192 0.92040 1.02589 1.04484 1.21626 0.96009 0.93520 0.84396 1.22206 1.01451 0.92760 1.05334 1.49067 1.50175 1.06657 1.09020 1.22395 1.00787 0.99825 0.84965 1.19998 1.13213 0.94301 0.97166 1.20017 0.86784 0.94165 0.89295 0.94895 1.22053 0.97997 1.01497 0.94939 1.21612 0.97078 1.00248 0.96282 1.22110 0.96027 0.99626 0.99707 1.19535 0.91375 0.93448 0.79523 1.00317 1.21430 0.95036 1.18687 1.23711 0.91817 1.25893 1.02151 0.95516 0.94011 1.70176 1.29618 1.29079 1.24385 0.85655 0.78691 0.79014 0.78496 1.19717 1.20981 1.18717 1.88258 1.40693 1.70352 1.30596 1.23634 0.98403 1.00001 0.90693 1.77195 1.22717 0.95182 1.20225 0.87659 0.93378 0.91584 0.88459 0.93142 0.87123 0.90659 0.78365 0.92491 0.89877 0.89957 0.92207 0.92005 0.93103 0.93230 0.81324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.52 71.98 0.69 -1.68 16 2 C 0.14 2.91 3.93 44.99 0.18 3.09 16 3 C -0.16 -2.40 8.84 71.98 0.64 -1.77 16 4 N -0.37 -11.09 3.53 -327.50 -1.15 -12.24 16 5 C 0.07 2.10 10.50 83.54 0.88 2.98 16 6 C -0.24 -9.18 5.12 -20.15 -0.10 -9.28 16 7 C 0.16 6.62 3.08 29.88 0.09 6.71 16 8 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 9 C -0.13 -4.39 5.40 30.68 0.17 -4.22 16 10 C -0.11 -3.90 6.03 30.71 0.19 -3.72 16 11 C -0.14 -5.83 5.36 30.68 0.16 -5.66 16 12 C 0.22 11.62 2.50 29.88 0.07 11.69 16 13 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 14 C -0.55 -32.09 8.79 25.60 0.23 -31.86 16 15 H 0.06 3.57 7.74 -2.91 -0.02 3.54 16 16 C 0.03 1.56 5.40 84.65 0.46 2.02 16 17 N -0.90 -55.34 12.84 21.45 0.28 -55.06 16 18 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 19 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 22 O -0.38 -20.35 9.21 -148.98 -1.37 -21.72 16 23 C 0.06 2.34 11.71 85.24 1.00 3.34 16 24 N -0.33 -12.50 12.58 -57.02 -0.72 -13.22 16 25 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.02 7.16 -2.39 -0.02 1.00 16 32 H 0.20 4.65 7.26 -2.91 -0.02 4.63 16 33 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.08 2.36 8.14 -2.38 -0.02 2.35 16 35 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 38 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.17 7.01 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -72.80 327.69 4.69 -68.12 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.99 Total: 15.24 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 4.63 Total: -28.35 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.60 Total: -80.52 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.37 Total: -21.72 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -72.80 4.69 -68.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310419270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.479 kcal (2) G-P(sol) polarization free energy of solvation -72.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds