Wall clock time and date at job start Mon Mar 30 2020 06:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46896 * 2 1 4 4 N 1.30829 * 125.90154 * 269.97417 * 3 2 1 5 5 N 1.40087 * 108.20855 * 180.02562 * 4 3 2 6 6 C 1.46500 * 126.04101 * 179.97438 * 5 4 3 7 7 C 1.34946 * 107.92254 * 0.02562 * 5 4 3 8 8 C 1.35316 * 107.74870 * 359.97438 * 7 5 4 9 9 C 1.50703 * 126.04135 * 180.26489 * 8 7 5 10 10 H 1.08998 * 110.27352 * 145.32817 * 9 8 7 11 11 C 1.54941 * 110.30733 * 267.52355 * 9 8 7 12 12 C 1.55300 * 100.94158 * 155.35987 * 11 9 8 13 13 C 1.54377 * 102.25255 * 325.86560 * 12 11 9 14 14 C 1.53002 * 109.90791 * 261.79998 * 13 12 11 15 15 C 1.50702 * 109.83137 * 140.86889 * 13 12 11 16 16 H 1.08004 * 120.00012 * 0.41473 * 15 13 12 17 17 C 1.37876 * 120.00022 * 180.41245 * 15 13 12 18 18 N 1.31518 * 120.00100 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00138 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46884 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47413 * 119.99732 * 19 17 15 22 22 H 1.48502 * 109.47175 * 240.00121 * 19 17 15 23 23 O 1.43239 * 107.59000 * 21.35555 * 13 12 11 24 24 H 1.08997 * 109.47146 * 299.99441 * 1 2 3 25 25 H 1.08997 * 109.47226 * 60.00056 * 1 2 3 26 26 H 1.09004 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46766 * 239.99980 * 2 1 3 28 28 H 1.09000 * 109.46908 * 120.00637 * 2 1 3 29 29 H 1.08995 * 109.47195 * 89.97299 * 6 5 4 30 30 H 1.08996 * 109.47070 * 209.97608 * 6 5 4 31 31 H 1.09003 * 109.47068 * 329.97665 * 6 5 4 32 32 H 1.07999 * 126.12479 * 180.02562 * 7 5 4 33 33 H 1.09005 * 111.12981 * 273.27783 * 11 9 8 34 34 H 1.09000 * 111.12686 * 37.43925 * 11 9 8 35 35 H 1.09002 * 110.85245 * 207.67445 * 12 11 9 36 36 H 1.08999 * 110.85116 * 84.05370 * 12 11 9 37 37 H 1.09003 * 109.47036 * 179.63113 * 14 13 12 38 38 H 1.08998 * 109.47095 * 299.63163 * 14 13 12 39 39 H 1.08996 * 109.47015 * 59.63201 * 14 13 12 40 40 H 0.97004 * 119.99802 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2884 2.1440 -1.0598 5 7 2.7336 3.4021 -0.6340 6 6 3.1284 4.5154 -1.5006 7 6 2.7357 3.4071 0.7155 8 6 2.3060 2.1939 1.1331 9 6 2.1450 1.7552 2.5659 10 1 1.2912 1.0844 2.6618 11 6 3.4369 1.0595 3.0637 12 6 3.3230 1.2878 4.5956 13 6 2.6435 2.6719 4.6709 14 6 3.6966 3.7574 4.9027 15 6 1.6380 2.6874 5.7933 16 1 1.4951 1.8071 6.4025 17 6 0.9006 3.8254 6.0426 18 7 1.0750 4.8976 5.3012 19 14 -0.3453 3.8449 7.4343 20 1 -0.3494 2.5242 8.1135 21 1 0.0200 4.9020 8.4111 22 1 -1.6966 4.1238 6.8852 23 8 1.9804 2.8972 3.4214 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2575 5.1342 -1.7165 30 1 3.8856 5.1166 -0.9975 31 1 3.5357 4.1236 -2.4326 32 1 3.0273 4.2320 1.3487 33 1 3.4282 -0.0037 2.8233 34 1 4.3252 1.5446 2.6591 35 1 4.3096 1.3143 5.0583 36 1 2.6978 0.5232 5.0564 37 1 3.2101 4.7318 4.9482 38 1 4.2150 3.5659 5.8422 39 1 4.4148 3.7478 4.0829 40 1 0.5558 5.6981 5.4763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310420569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:34 Heat of formation + Delta-G solvation = 23.280782 kcal Electronic energy + Delta-G solvation = -20862.258439 eV Core-core repulsion = 17871.594431 eV Total energy + Delta-G solvation = -2990.664009 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.89282 -38.15250 -34.53690 -32.99637 -31.51736 -30.90804 -30.51704 -28.66908 -26.55544 -25.23303 -24.15371 -23.02128 -21.31592 -19.96692 -19.14479 -18.91692 -16.40327 -16.36594 -15.24541 -15.08864 -14.54176 -14.22557 -14.12259 -13.77274 -13.32142 -13.02052 -12.72479 -12.49775 -12.21082 -12.06865 -11.84322 -11.72132 -11.23570 -11.14141 -10.95967 -10.92342 -10.78673 -10.68155 -10.43070 -10.22067 -10.04175 -9.86648 -9.45878 -9.02868 -8.82916 -8.43732 -7.99615 -7.60817 -5.90193 -4.05570 2.29418 2.84544 3.17362 3.32164 3.40622 3.43825 4.46596 4.71372 5.05436 5.13026 5.23526 5.25404 5.44201 5.47996 5.54837 5.58515 5.66431 5.69276 5.82483 5.95497 5.98269 6.05290 6.25366 6.34865 6.39570 6.44889 6.57753 6.65816 6.69810 6.83480 6.96960 7.00080 7.07446 7.16936 7.42467 7.49322 7.84116 8.11556 8.14648 8.43327 8.72443 9.13271 9.65646 11.11711 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.006131 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.559749 B = 4565.639189 C = 4828.172893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C 0.082 3.918 4 N -0.310 5.310 5 N -0.388 5.388 6 C 0.108 3.892 7 C 0.080 3.920 8 C -0.219 4.219 9 C 0.155 3.845 10 H 0.058 0.942 11 C -0.145 4.145 12 C -0.142 4.142 13 C 0.228 3.772 14 C -0.138 4.138 15 C -0.531 4.531 16 H 0.058 0.942 17 C 0.081 3.919 18 N -0.861 5.861 19 Si 0.885 3.115 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.284 1.284 23 O -0.347 6.347 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.177 0.823 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.034 0.966 39 H 0.010 0.990 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -4.352 -10.130 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.080 4.080 3 C -0.085 4.085 4 N -0.133 5.133 5 N -0.170 5.170 6 C -0.034 4.034 7 C -0.064 4.064 8 C -0.230 4.230 9 C 0.095 3.905 10 H 0.075 0.925 11 C -0.183 4.183 12 C -0.179 4.179 13 C 0.191 3.809 14 C -0.195 4.195 15 C -0.569 4.569 16 H 0.076 0.924 17 C -0.124 4.124 18 N -0.498 5.498 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 O -0.267 6.267 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.194 0.806 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.029 0.971 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.867 -3.774 -11.573 12.773 hybrid contribution -0.574 0.104 1.645 1.746 sum 3.293 -3.670 -9.928 11.085 Atomic orbital electron populations 1.21705 0.94441 1.01574 1.02607 1.19905 0.96093 0.89120 1.02852 1.22077 0.99267 0.96831 0.90317 1.77129 1.22325 0.90987 1.22812 1.48270 1.52697 1.11054 1.04974 1.21726 1.00758 0.86235 0.94673 1.22378 1.00457 0.99946 0.83656 1.20147 1.12221 0.94713 0.95953 1.20769 0.95004 0.89420 0.85309 0.92454 1.23215 0.98478 0.99632 0.96936 1.23223 1.00259 1.00442 0.94024 1.19622 0.89855 0.88561 0.82876 1.21967 0.96654 1.04097 0.96809 1.21336 1.22720 0.98530 1.14325 0.92382 1.24981 0.96371 0.95561 0.95453 1.69960 1.39609 1.02380 1.37846 0.86671 0.81656 0.78007 0.82371 1.19775 1.21069 1.21008 1.88737 1.75697 1.35792 1.26431 0.91890 0.92800 0.92271 0.90964 0.90004 0.91238 0.89719 0.89921 0.80572 0.92075 0.91890 0.92339 0.91767 0.89295 0.94675 0.97104 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.89 37.16 0.37 -1.53 16 2 C -0.04 -0.56 6.28 -27.88 -0.18 -0.74 16 3 C 0.08 1.42 6.47 -82.41 -0.53 0.89 16 4 N -0.31 -5.49 12.58 33.67 0.42 -5.07 16 5 N -0.39 -6.34 4.01 -68.17 -0.27 -6.61 16 6 C 0.11 1.19 11.47 59.85 0.69 1.88 16 7 C 0.08 1.47 10.93 -17.22 -0.19 1.28 16 8 C -0.22 -4.20 5.27 -105.05 -0.55 -4.76 16 9 C 0.16 3.21 3.56 -26.86 -0.10 3.11 16 10 H 0.06 1.20 8.11 -51.93 -0.42 0.78 16 11 C -0.14 -2.68 6.56 -24.49 -0.16 -2.84 16 12 C -0.14 -2.93 6.08 -24.79 -0.15 -3.09 16 13 C 0.23 5.64 0.82 -91.05 -0.07 5.56 16 14 C -0.14 -3.30 8.51 37.16 0.32 -2.98 16 15 C -0.53 -14.53 8.22 -34.44 -0.28 -14.81 16 16 H 0.06 1.57 7.52 -52.48 -0.39 1.18 16 17 C 0.08 2.24 5.26 -17.82 -0.09 2.15 16 18 N -0.86 -24.54 10.92 55.43 0.61 -23.93 16 19 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 O -0.35 -8.76 9.43 -35.23 -0.33 -9.09 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.08 1.07 7.97 -51.93 -0.41 0.66 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.18 3.20 8.04 -52.49 -0.42 2.78 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 35 H 0.06 1.12 7.82 -51.93 -0.41 0.72 16 36 H 0.06 1.32 7.66 -51.93 -0.40 0.92 16 37 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -31.47 328.06 -7.14 -38.62 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.55 Total: 0.83 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.94 Total: -15.88 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: 0.76 Total: -35.61 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: -0.33 Total: -9.09 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.47 -7.14 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310420569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.897 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds