Wall clock time and date at job start Mon Mar 30 2020 06:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 109.46896 * 2 1 4 4 N 1.30829 * 125.90154 * 269.97417 * 3 2 1 5 5 N 1.40087 * 108.20855 * 180.02562 * 4 3 2 6 6 C 1.46500 * 126.04101 * 179.97438 * 5 4 3 7 7 C 1.34946 * 107.92254 * 0.02562 * 5 4 3 8 8 C 1.35316 * 107.74870 * 359.97438 * 7 5 4 9 9 C 1.50703 * 126.04135 * 180.26489 * 8 7 5 10 10 H 1.08998 * 110.27352 * 145.32817 * 9 8 7 11 11 C 1.54941 * 110.30733 * 267.52355 * 9 8 7 12 12 C 1.55300 * 100.94158 * 155.35987 * 11 9 8 13 13 C 1.54377 * 102.25255 * 325.86560 * 12 11 9 14 14 C 1.53002 * 109.90791 * 261.79998 * 13 12 11 15 15 C 1.50702 * 109.83137 * 140.86889 * 13 12 11 16 16 H 1.08004 * 120.00012 * 0.41473 * 15 13 12 17 17 C 1.37876 * 120.00022 * 180.41245 * 15 13 12 18 18 N 1.31518 * 120.00100 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00138 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46884 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47413 * 119.99732 * 19 17 15 22 22 H 1.48502 * 109.47175 * 240.00121 * 19 17 15 23 23 O 1.43239 * 107.59000 * 21.35555 * 13 12 11 24 24 H 1.08997 * 109.47146 * 299.99441 * 1 2 3 25 25 H 1.08997 * 109.47226 * 60.00056 * 1 2 3 26 26 H 1.09004 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46766 * 239.99980 * 2 1 3 28 28 H 1.09000 * 109.46908 * 120.00637 * 2 1 3 29 29 H 1.08995 * 109.47195 * 89.97299 * 6 5 4 30 30 H 1.08996 * 109.47070 * 209.97608 * 6 5 4 31 31 H 1.09003 * 109.47068 * 329.97665 * 6 5 4 32 32 H 1.07999 * 126.12479 * 180.02562 * 7 5 4 33 33 H 1.09005 * 111.12981 * 273.27783 * 11 9 8 34 34 H 1.09000 * 111.12686 * 37.43925 * 11 9 8 35 35 H 1.09002 * 110.85245 * 207.67445 * 12 11 9 36 36 H 1.08999 * 110.85116 * 84.05370 * 12 11 9 37 37 H 1.09003 * 109.47036 * 179.63113 * 14 13 12 38 38 H 1.08998 * 109.47095 * 299.63163 * 14 13 12 39 39 H 1.08996 * 109.47015 * 59.63201 * 14 13 12 40 40 H 0.97004 * 119.99802 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2884 2.1440 -1.0598 5 7 2.7336 3.4021 -0.6340 6 6 3.1284 4.5154 -1.5006 7 6 2.7357 3.4071 0.7155 8 6 2.3060 2.1939 1.1331 9 6 2.1450 1.7552 2.5659 10 1 1.2912 1.0844 2.6618 11 6 3.4369 1.0595 3.0637 12 6 3.3230 1.2878 4.5956 13 6 2.6435 2.6719 4.6709 14 6 3.6966 3.7574 4.9027 15 6 1.6380 2.6874 5.7933 16 1 1.4951 1.8071 6.4025 17 6 0.9006 3.8254 6.0426 18 7 1.0750 4.8976 5.3012 19 14 -0.3453 3.8449 7.4343 20 1 -0.3494 2.5242 8.1135 21 1 0.0200 4.9020 8.4111 22 1 -1.6966 4.1238 6.8852 23 8 1.9804 2.8972 3.4214 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2575 5.1342 -1.7165 30 1 3.8856 5.1166 -0.9975 31 1 3.5357 4.1236 -2.4326 32 1 3.0273 4.2320 1.3487 33 1 3.4282 -0.0037 2.8233 34 1 4.3252 1.5446 2.6591 35 1 4.3096 1.3143 5.0583 36 1 2.6978 0.5232 5.0564 37 1 3.2101 4.7318 4.9482 38 1 4.2150 3.5659 5.8422 39 1 4.4148 3.7478 4.0829 40 1 0.5558 5.6981 5.4763 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310420569.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:33 Heat of formation + Delta-G solvation = 4.941279 kcal Electronic energy + Delta-G solvation = -20863.053700 eV Core-core repulsion = 17871.594431 eV Total energy + Delta-G solvation = -2991.459269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.22431 -39.88024 -35.74679 -34.89432 -32.80881 -32.60049 -32.05192 -30.23300 -27.79461 -27.25273 -25.68117 -24.20570 -22.83533 -21.48670 -20.89190 -20.21976 -18.36772 -17.68479 -16.93163 -16.36338 -16.32895 -15.66289 -15.44928 -15.14125 -14.89373 -14.25950 -14.10072 -13.85551 -13.70649 -13.59338 -13.37455 -13.04091 -12.86248 -12.79461 -12.63866 -12.38149 -12.25362 -12.19066 -12.08141 -12.00166 -11.70311 -11.37150 -11.20110 -10.86748 -10.51570 -10.11892 -9.74900 -9.11157 -7.97104 -6.19083 0.95513 1.41298 1.44276 1.54153 1.69443 1.79260 2.46827 3.17784 3.58299 3.69036 3.94661 4.11351 4.18637 4.23613 4.27679 4.42277 4.42440 4.50612 4.65471 4.65844 4.72298 4.77556 4.80853 4.98907 5.01889 5.06241 5.07933 5.17238 5.17966 5.29456 5.35669 5.36733 5.45829 5.62082 5.75689 5.78545 6.16707 6.19250 6.41638 6.74173 6.79790 7.23942 7.56884 9.03150 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.006131 C = 0.005798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.559749 B = 4565.639189 C = 4828.172893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.041 4.041 3 C 0.079 3.921 4 N -0.323 5.323 5 N -0.384 5.384 6 C 0.097 3.903 7 C 0.071 3.929 8 C -0.242 4.242 9 C 0.152 3.848 10 H 0.049 0.951 11 C -0.129 4.129 12 C -0.137 4.137 13 C 0.214 3.786 14 C -0.129 4.129 15 C -0.550 4.550 16 H 0.053 0.947 17 C 0.033 3.967 18 N -0.888 5.888 19 Si 0.944 3.056 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.287 1.287 23 O -0.378 6.378 24 H 0.039 0.961 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.039 0.961 39 H 0.027 0.973 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.431 -5.530 -10.894 12.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C -0.087 4.087 4 N -0.146 5.146 5 N -0.166 5.166 6 C -0.043 4.043 7 C -0.075 4.075 8 C -0.253 4.253 9 C 0.093 3.907 10 H 0.067 0.933 11 C -0.166 4.166 12 C -0.175 4.175 13 C 0.176 3.824 14 C -0.187 4.187 15 C -0.587 4.587 16 H 0.071 0.929 17 C -0.168 4.168 18 N -0.526 5.526 19 Si 0.770 3.230 20 H -0.191 1.191 21 H -0.205 1.205 22 H -0.213 1.213 23 O -0.298 6.298 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.118 0.882 32 H 0.189 0.811 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.350 -4.953 -12.354 14.003 hybrid contribution -0.716 0.506 1.821 2.021 sum 3.634 -4.448 -10.533 11.997 Atomic orbital electron populations 1.21665 0.94000 1.02988 1.01151 1.20059 0.96382 0.87412 1.04185 1.22505 0.98748 0.98112 0.89380 1.77086 1.22760 0.91651 1.23143 1.48643 1.51598 1.11593 1.04759 1.22135 1.01966 0.85295 0.94923 1.22363 1.00723 0.99683 0.84758 1.20146 1.13845 0.95729 0.95604 1.20843 0.95812 0.88347 0.85744 0.93337 1.23129 0.97339 1.01291 0.94886 1.23126 1.00479 0.98008 0.95873 1.19716 0.89620 0.90769 0.82260 1.21830 0.96743 1.02434 0.97670 1.21726 1.23423 0.98304 1.15292 0.92874 1.25681 0.98146 0.95403 0.97619 1.70103 1.40448 1.02745 1.39273 0.85750 0.79174 0.78234 0.79846 1.19097 1.20464 1.21292 1.88668 1.76217 1.37870 1.27038 0.94176 0.93337 0.89439 0.89111 0.89102 0.90157 0.87589 0.88215 0.81121 0.89014 0.91545 0.90856 0.91968 0.92286 0.94224 0.95396 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 9.89 71.98 0.71 -2.75 16 2 C -0.04 -1.07 6.28 29.85 0.19 -0.88 16 3 C 0.08 2.64 6.47 43.10 0.28 2.92 16 4 N -0.32 -11.01 12.58 -47.39 -0.60 -11.61 16 5 N -0.38 -12.10 4.01 -369.57 -1.48 -13.58 16 6 C 0.10 1.96 11.47 127.77 1.47 3.42 16 7 C 0.07 2.58 10.93 83.54 0.91 3.49 16 8 C -0.24 -9.15 5.27 -20.14 -0.11 -9.26 16 9 C 0.15 6.24 3.56 30.51 0.11 6.35 16 10 H 0.05 2.04 8.11 -2.39 -0.02 2.02 16 11 C -0.13 -4.53 6.56 32.05 0.21 -4.32 16 12 C -0.14 -5.50 6.08 31.85 0.19 -5.31 16 13 C 0.21 10.58 0.82 -11.07 -0.01 10.57 16 14 C -0.13 -6.21 8.51 71.98 0.61 -5.60 16 15 C -0.55 -30.29 8.22 25.60 0.21 -30.08 16 16 H 0.05 2.89 7.52 -2.91 -0.02 2.86 16 17 C 0.03 1.87 5.26 84.65 0.45 2.31 16 18 N -0.89 -51.65 10.92 21.45 0.23 -51.42 16 19 Si 0.94 43.96 29.54 68.60 2.03 45.98 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 O -0.38 -19.30 9.43 -148.98 -1.40 -20.71 16 24 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.09 2.17 7.97 -2.39 -0.02 2.15 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.17 6.30 8.04 -2.91 -0.02 6.27 16 33 H 0.09 2.65 8.14 -2.38 -0.02 2.63 16 34 H 0.07 2.29 8.05 -2.39 -0.02 2.27 16 35 H 0.07 2.68 7.82 -2.39 -0.02 2.66 16 36 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 37 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -67.68 328.06 5.00 -62.68 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.00 Total: 17.77 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: 5.22 Total: -29.12 kcal Atomic # 7 Polarization: -74.76 SS G_CDS: -1.84 Total: -76.61 kcal Atomic # 8 Polarization: -19.30 SS G_CDS: -1.40 Total: -20.71 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.68 5.00 -62.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310420569.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.624 kcal (2) G-P(sol) polarization free energy of solvation -67.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds