Wall clock time and date at job start Mon Mar 30 2020 06:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 N 1.30843 * 125.89671 * 269.69297 * 3 2 1 5 5 N 1.40086 * 108.20224 * 179.85385 * 4 3 2 6 6 C 1.46499 * 126.03669 * 180.17343 * 5 4 3 7 7 C 1.34941 * 107.92570 * 0.41408 * 5 4 3 8 8 C 1.35314 * 107.75028 * 359.75609 * 7 5 4 9 9 C 1.50705 * 126.04556 * 179.97438 * 8 7 5 10 10 H 1.08994 * 110.27148 * 144.32559 * 9 8 7 11 11 C 1.54947 * 110.30981 * 266.41481 * 9 8 7 12 12 C 1.55411 * 100.89391 * 155.28541 * 11 9 8 13 13 C 1.54384 * 102.30737 * 325.99026 * 12 11 9 14 14 C 1.53000 * 109.90460 * 140.83880 * 13 12 11 15 15 C 1.50700 * 109.83357 * 261.76776 * 13 12 11 16 16 H 1.07998 * 119.99810 * 359.59692 * 15 13 12 17 17 C 1.37877 * 119.99871 * 179.58909 * 15 13 12 18 18 N 1.31510 * 120.00287 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99674 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47060 * 119.99852 * 19 17 15 22 22 H 1.48500 * 109.46714 * 239.99756 * 19 17 15 23 23 O 1.43238 * 107.58954 * 21.28867 * 13 12 11 24 24 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.09001 * 109.46762 * 270.29019 * 6 5 4 30 30 H 1.08997 * 109.47315 * 30.28289 * 6 5 4 31 31 H 1.08995 * 109.47269 * 150.28729 * 6 5 4 32 32 H 1.08000 * 126.13093 * 179.78959 * 7 5 4 33 33 H 1.08997 * 111.12572 * 273.27897 * 11 9 8 34 34 H 1.09002 * 111.12441 * 37.43800 * 11 9 8 35 35 H 1.08999 * 110.88414 * 207.76061 * 12 11 9 36 36 H 1.09002 * 110.93168 * 84.24968 * 12 11 9 37 37 H 1.08997 * 109.47629 * 300.36958 * 14 13 12 38 38 H 1.09005 * 109.47237 * 60.37050 * 14 13 12 39 39 H 1.09001 * 109.47445 * 180.36582 * 14 13 12 40 40 H 0.97003 * 119.99853 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2933 2.1423 -1.0599 5 7 2.7328 3.4024 -0.6342 6 6 3.1264 4.5161 -1.5008 7 6 2.7346 3.4076 0.7152 8 6 2.3057 2.1941 1.1330 9 6 2.1505 1.7534 2.5658 10 1 1.2861 1.0973 2.6675 11 6 3.4336 1.0311 3.0483 12 6 3.3392 1.2585 4.5828 13 6 2.6849 2.6541 4.6690 14 6 1.6755 2.6861 5.8184 15 6 3.7443 3.7028 4.8900 16 1 4.7819 3.4138 4.9696 17 6 3.3890 5.0312 4.9903 18 7 2.1256 5.3832 4.8927 19 14 4.7024 6.3312 5.2635 20 1 6.0352 5.6806 5.3370 21 1 4.6843 7.2977 4.1361 22 1 4.4315 7.0488 6.5351 23 8 2.0140 2.8952 3.4266 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 4.1929 4.4497 -1.7158 30 1 2.5641 4.4671 -2.4333 31 1 2.9151 5.4599 -0.9982 32 1 3.0258 4.2326 1.3485 33 1 3.4020 -0.0307 2.8043 34 1 4.3270 1.5005 2.6365 35 1 4.3305 1.2663 5.0361 36 1 2.7066 0.5038 5.0501 37 1 0.9066 1.9326 5.6479 38 1 2.1876 2.4765 6.7576 39 1 1.2133 3.6719 5.8688 40 1 1.8757 6.3178 4.9637 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310420570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:37 Heat of formation + Delta-G solvation = 23.101400 kcal Electronic energy + Delta-G solvation = -20969.836003 eV Core-core repulsion = 17979.164215 eV Total energy + Delta-G solvation = -2990.671787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.81745 -38.12294 -34.50258 -32.99643 -31.49108 -30.85000 -30.54085 -28.63494 -26.53954 -25.20648 -24.14251 -22.99851 -21.12593 -19.96679 -19.18537 -18.83489 -16.79937 -16.09037 -15.18774 -14.95616 -14.54339 -14.21945 -13.96824 -13.75672 -13.22129 -12.98336 -12.72940 -12.48235 -12.34330 -12.20937 -11.77073 -11.55154 -11.22979 -11.17279 -10.96191 -10.88337 -10.70897 -10.65073 -10.38733 -10.21040 -10.15443 -9.81018 -9.45791 -9.05794 -8.75583 -8.47558 -7.96008 -7.58075 -5.92125 -4.07827 2.37925 2.92210 3.24159 3.27468 3.36185 3.39868 4.42453 4.78012 5.06060 5.16188 5.26016 5.32427 5.47517 5.53758 5.54742 5.64273 5.71186 5.75034 5.85589 5.95869 5.99670 6.03880 6.23153 6.37575 6.39975 6.47098 6.67055 6.69017 6.72748 6.87154 6.98602 7.04631 7.12526 7.21956 7.44477 7.54124 7.81384 8.15252 8.18876 8.42905 8.71059 9.12240 9.62554 11.09141 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.018873 B = 0.007386 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.218927 B = 3790.173302 C = 4743.388700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C 0.079 3.921 4 N -0.312 5.312 5 N -0.388 5.388 6 C 0.108 3.892 7 C 0.089 3.911 8 C -0.221 4.221 9 C 0.155 3.845 10 H 0.051 0.949 11 C -0.137 4.137 12 C -0.143 4.143 13 C 0.228 3.772 14 C -0.140 4.140 15 C -0.526 4.526 16 H 0.057 0.943 17 C 0.080 3.920 18 N -0.860 5.860 19 Si 0.882 3.118 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.284 1.284 23 O -0.347 6.347 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.011 0.989 38 H 0.034 0.966 39 H 0.089 0.911 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 -6.160 -8.452 10.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.087 4.087 4 N -0.135 5.135 5 N -0.170 5.170 6 C -0.034 4.034 7 C -0.056 4.056 8 C -0.232 4.232 9 C 0.095 3.905 10 H 0.068 0.932 11 C -0.175 4.175 12 C -0.181 4.181 13 C 0.191 3.809 14 C -0.198 4.198 15 C -0.564 4.564 16 H 0.075 0.925 17 C -0.124 4.124 18 N -0.497 5.497 19 Si 0.710 3.290 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 O -0.266 6.266 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.199 0.801 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.030 0.970 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.373 -5.618 -9.859 11.353 hybrid contribution 0.927 0.818 1.036 1.613 sum 0.554 -4.800 -8.823 10.060 Atomic orbital electron populations 1.21697 0.94553 1.01461 1.02509 1.19893 0.95967 0.89250 1.02819 1.22054 0.99463 0.96785 0.90407 1.77113 1.22506 0.91047 1.22831 1.48273 1.52781 1.10892 1.05085 1.21723 1.00687 0.86283 0.94703 1.22508 0.99356 1.00277 0.83433 1.20036 1.12758 0.94763 0.95680 1.20740 0.94935 0.89013 0.85859 0.93161 1.23138 0.98946 0.98906 0.96467 1.23232 1.01102 0.99073 0.94717 1.19626 0.89472 0.89833 0.81997 1.21995 0.97975 1.02499 0.97327 1.21283 0.92812 0.91587 1.50725 0.92461 1.24978 0.94911 0.98423 0.94105 1.69984 1.15329 1.16478 1.47871 0.86725 0.82487 0.82061 0.77766 1.19832 1.21105 1.21005 1.88746 1.75901 1.35089 1.26895 0.92761 0.92338 0.92077 0.90103 0.90975 0.91365 0.89954 0.89627 0.80135 0.92452 0.91278 0.91514 0.93110 0.96978 0.94648 0.89248 0.93275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.04 -0.55 6.30 -27.88 -0.18 -0.73 16 3 C 0.08 1.41 6.47 -82.40 -0.53 0.87 16 4 N -0.31 -5.70 12.58 33.67 0.42 -5.28 16 5 N -0.39 -6.74 4.01 -68.17 -0.27 -7.01 16 6 C 0.11 1.32 11.47 59.85 0.69 2.00 16 7 C 0.09 1.75 10.92 -17.23 -0.19 1.56 16 8 C -0.22 -4.37 5.27 -105.05 -0.55 -4.93 16 9 C 0.15 3.19 3.55 -26.85 -0.10 3.10 16 10 H 0.05 1.00 8.13 -51.93 -0.42 0.57 16 11 C -0.14 -2.61 6.57 -24.42 -0.16 -2.77 16 12 C -0.14 -2.97 6.08 -24.73 -0.15 -3.12 16 13 C 0.23 5.61 0.82 -91.05 -0.07 5.54 16 14 C -0.14 -3.40 8.52 37.16 0.32 -3.09 16 15 C -0.53 -14.09 8.23 -34.44 -0.28 -14.37 16 16 H 0.06 1.53 7.48 -52.49 -0.39 1.14 16 17 C 0.08 2.17 5.26 -17.82 -0.09 2.08 16 18 N -0.86 -24.07 10.93 55.43 0.61 -23.47 16 19 Si 0.88 20.69 29.54 -169.99 -5.02 15.66 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 O -0.35 -8.71 9.41 -35.23 -0.33 -9.04 16 24 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 1.05 7.96 -51.93 -0.41 0.64 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.18 3.75 8.03 -52.49 -0.42 3.33 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.39 8.05 -51.93 -0.42 0.97 16 35 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 36 H 0.05 0.96 7.85 -51.93 -0.41 0.55 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 2.41 6.04 -51.93 -0.31 2.09 16 40 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -30.69 328.04 -7.14 -37.83 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -6.55 Total: 1.67 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.94 Total: -15.31 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.76 Total: -35.75 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: -0.33 Total: -9.04 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.69 -7.14 -37.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310420570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.929 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds