Wall clock time and date at job start Mon Mar 30 2020 06:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36006 * 117.00016 * 2 1 4 4 C 1.38480 * 120.04115 * 359.93180 * 3 2 1 5 5 C 1.38844 * 119.95070 * 180.02562 * 4 3 2 6 6 N 1.39984 * 119.98593 * 179.97438 * 5 4 3 7 7 C 1.46898 * 110.99482 * 67.01063 * 6 5 4 8 8 C 1.46899 * 111.00057 * 303.05947 * 6 5 4 9 9 H 1.08994 * 109.47115 * 65.23031 * 8 6 5 10 10 C 1.52999 * 109.46725 * 185.23274 * 8 6 5 11 11 C 1.50703 * 109.46846 * 305.22752 * 8 6 5 12 12 H 1.07997 * 120.00159 * 0.02562 * 11 8 6 13 13 C 1.37878 * 119.99484 * 180.02562 * 11 8 6 14 14 N 1.31503 * 120.00494 * 0.02562 * 13 11 8 15 15 Si 1.86804 * 119.99375 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47074 * 90.00507 * 15 13 11 17 17 H 1.48505 * 109.47042 * 210.00168 * 15 13 11 18 18 H 1.48495 * 109.47333 * 330.00128 * 15 13 11 19 19 C 1.38849 * 120.02765 * 0.02734 * 5 4 3 20 20 C 1.50701 * 119.95419 * 179.97438 * 19 5 4 21 21 C 1.38209 * 120.08627 * 359.97438 * 19 5 4 22 22 C 1.38669 * 120.05235 * 0.02562 * 21 19 5 23 23 N 1.40291 * 120.01673 * 179.69617 * 22 21 19 24 24 H 1.08988 * 109.47209 * 299.99957 * 1 2 3 25 25 H 1.09000 * 109.47034 * 60.00139 * 1 2 3 26 26 H 1.09004 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.08000 * 120.02232 * 0.02562 * 4 3 2 28 28 H 1.09002 * 109.47420 * 60.00427 * 7 6 5 29 29 H 1.09011 * 109.46893 * 179.97438 * 7 6 5 30 30 H 1.08998 * 109.47767 * 299.99536 * 7 6 5 31 31 H 1.08997 * 109.46956 * 298.84081 * 10 8 6 32 32 H 1.08999 * 109.47890 * 58.85011 * 10 8 6 33 33 H 1.09001 * 109.46743 * 178.84819 * 10 8 6 34 34 H 0.97001 * 120.00542 * 179.97438 * 14 13 11 35 35 H 1.08998 * 109.47565 * 270.01962 * 20 19 5 36 36 H 1.08999 * 109.47258 * 30.02435 * 20 19 5 37 37 H 1.09000 * 109.47066 * 150.02112 * 20 19 5 38 38 H 1.08000 * 119.97113 * 179.97438 * 21 19 5 39 39 H 0.97003 * 119.99924 * 0.02562 * 23 22 21 40 40 H 0.97005 * 119.99900 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2930 2.3738 -0.0014 5 6 1.9253 3.6099 -0.0020 6 7 1.1645 4.7849 -0.0039 7 6 0.4275 4.9368 1.2576 8 6 0.2516 4.8190 -1.1544 9 1 -0.4831 4.0197 -1.0590 10 6 -0.4662 6.1695 -1.1957 11 6 1.0384 4.6292 -2.4256 12 1 2.1093 4.4961 -2.3832 13 6 0.3909 4.6255 -3.6429 14 7 -0.9131 4.7881 -3.6947 15 14 1.3660 4.3895 -5.2187 16 1 1.4476 2.9416 -5.5381 17 1 0.6899 5.1044 -6.3310 18 1 2.7355 4.9349 -5.0397 19 6 3.3120 3.6810 -0.0016 20 6 3.9966 5.0236 -0.0028 21 6 4.0652 2.5222 -0.0003 22 6 3.4373 1.2858 0.0003 23 7 4.2026 0.1100 -0.0047 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.2145 2.3184 -0.0021 28 1 1.1327 4.9785 2.0877 29 1 -0.1549 5.8579 1.2296 30 1 -0.2421 4.0872 1.3920 31 1 -1.0516 6.2979 -0.2853 32 1 0.2696 6.9702 -1.2706 33 1 -1.1284 6.2026 -2.0610 34 1 -1.3686 4.7859 -4.5511 35 1 4.1616 5.3464 -1.0307 36 1 3.3688 5.7520 0.5105 37 1 4.9545 4.9434 0.5111 38 1 5.1437 2.5797 -0.0004 39 1 5.1712 0.1618 -0.0082 40 1 3.7631 -0.7547 -0.0040 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310432083.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:55 Heat of formation + Delta-G solvation = -20.816351 kcal Electronic energy + Delta-G solvation = -21117.370456 eV Core-core repulsion = 18124.794252 eV Total energy + Delta-G solvation = -2992.576204 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.31705 -39.34191 -37.69386 -35.32800 -34.30311 -32.34513 -30.96295 -29.24530 -28.68297 -27.62722 -26.53314 -25.38202 -23.40478 -21.81627 -21.14175 -18.89378 -18.44507 -17.84164 -17.15595 -16.90264 -16.58481 -16.06502 -15.67551 -15.39734 -15.15422 -14.92341 -14.58183 -14.23563 -13.75675 -13.70305 -13.30958 -13.29618 -12.94942 -12.66764 -12.56323 -12.52244 -12.42422 -12.35100 -12.15538 -12.03482 -11.88946 -11.68212 -10.93279 -10.78376 -10.51222 -9.19956 -9.04100 -8.10067 -7.91763 -6.17049 0.58870 0.77349 1.38048 1.39180 1.49463 2.42344 2.43072 2.95153 3.14614 3.20583 3.41329 3.98532 4.25879 4.31672 4.36578 4.47790 4.57123 4.63299 4.65237 4.75105 4.77624 4.83757 4.97758 5.00375 5.08235 5.11805 5.16781 5.17586 5.36907 5.48182 5.56713 5.75000 5.81015 5.93862 6.05817 6.29168 6.30902 6.55054 6.74179 6.87314 7.05366 7.18192 7.50197 8.96850 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015163 B = 0.008141 C = 0.007599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.212338 B = 3438.604290 C = 3683.631763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.331 6.331 3 C 0.034 3.966 4 C -0.189 4.189 5 C 0.092 3.908 6 N -0.502 5.502 7 C 0.031 3.969 8 C 0.225 3.775 9 H -0.036 1.036 10 C -0.123 4.123 11 C -0.498 4.498 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.920 5.920 15 Si 0.946 3.054 16 H -0.284 1.284 17 H -0.281 1.281 18 H -0.268 1.268 19 C -0.070 4.070 20 C -0.088 4.088 21 C -0.165 4.165 22 C 0.178 3.822 23 N -0.868 5.868 24 H 0.052 0.948 25 H 0.032 0.968 26 H 0.128 0.872 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.009 0.991 31 H 0.032 0.968 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.259 0.741 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.154 0.846 39 H 0.407 0.593 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -6.723 9.305 13.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.245 6.245 3 C -0.015 4.015 4 C -0.211 4.211 5 C -0.004 4.004 6 N -0.223 5.223 7 C -0.116 4.116 8 C 0.119 3.881 9 H -0.019 1.019 10 C -0.181 4.181 11 C -0.536 4.536 12 H 0.071 0.929 13 C -0.185 4.185 14 N -0.561 5.561 15 Si 0.773 3.227 16 H -0.210 1.210 17 H -0.206 1.206 18 H -0.193 1.193 19 C -0.072 4.072 20 C -0.144 4.144 21 C -0.188 4.188 22 C 0.074 3.926 23 N -0.411 5.411 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.146 0.854 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.098 0.902 38 H 0.171 0.829 39 H 0.237 0.763 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.731 -6.432 9.136 13.586 hybrid contribution -0.916 -0.912 -1.132 1.718 sum 6.815 -7.343 8.003 12.822 Atomic orbital electron populations 1.23063 0.77822 1.04840 1.00546 1.85834 1.21990 1.26409 1.90298 1.18425 0.91152 0.84365 1.07536 1.21422 0.99161 0.93397 1.07103 1.18308 0.92916 0.87832 1.01371 1.59876 1.25849 1.33500 1.03079 1.22413 0.97318 1.00327 0.91547 1.19068 0.88951 0.92677 0.87374 1.01860 1.21672 0.99211 0.97407 0.99785 1.21283 0.93918 1.47328 0.91106 0.92948 1.25551 0.95716 0.95550 1.01641 1.69990 1.08614 1.51774 1.25737 0.85729 0.79305 0.77768 0.79947 1.21023 1.20638 1.19269 1.19736 0.91656 0.96347 0.99411 1.20479 0.99474 0.92978 1.01501 1.20433 1.00255 0.88957 1.09194 1.17145 0.86935 0.88890 0.99624 1.42145 1.08238 1.04421 1.86304 0.92964 0.94880 0.85413 0.87774 0.90731 0.90764 0.97192 0.94920 0.94696 0.92057 0.93147 0.92936 0.91579 0.90214 0.82886 0.76264 0.76921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.81 113.37 1.11 2.04 16 2 O -0.33 -11.09 9.74 -93.62 -0.91 -12.01 16 3 C 0.03 1.26 6.70 22.58 0.15 1.41 16 4 C -0.19 -7.93 7.62 22.47 0.17 -7.76 16 5 C 0.09 3.87 3.35 38.13 0.13 4.00 16 6 N -0.50 -21.90 3.55 -700.03 -2.48 -24.38 16 7 C 0.03 1.13 9.15 127.69 1.17 2.30 16 8 C 0.22 11.57 1.71 44.17 0.08 11.64 16 9 H -0.04 -2.07 7.17 -2.39 -0.02 -2.09 16 10 C -0.12 -6.01 8.76 71.98 0.63 -5.38 16 11 C -0.50 -27.90 8.03 25.60 0.21 -27.70 16 12 H 0.05 3.01 7.00 -2.91 -0.02 2.99 16 13 C 0.01 0.76 5.30 84.66 0.45 1.21 16 14 N -0.92 -53.63 11.31 21.45 0.24 -53.39 16 15 Si 0.95 45.26 29.54 68.60 2.03 47.29 16 16 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 19 C -0.07 -2.59 5.66 -19.72 -0.11 -2.70 16 20 C -0.09 -2.85 9.76 71.24 0.70 -2.15 16 21 C -0.17 -5.27 9.54 22.37 0.21 -5.06 16 22 C 0.18 5.82 6.77 38.14 0.26 6.08 16 23 N -0.87 -20.95 9.11 -50.90 -0.46 -21.41 16 24 H 0.05 1.44 7.66 -2.39 -0.02 1.42 16 25 H 0.03 1.09 7.66 -2.39 -0.02 1.07 16 26 H 0.13 2.64 8.14 -2.38 -0.02 2.62 16 27 H 0.10 4.57 5.30 -2.91 -0.02 4.56 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.58 6.16 -2.38 -0.01 2.57 16 30 H 0.01 0.36 7.52 -2.39 -0.02 0.34 16 31 H 0.03 1.39 6.41 -2.39 -0.02 1.38 16 32 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 3.33 6.04 -2.39 -0.01 3.31 16 34 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.07 2.24 7.45 -2.39 -0.02 2.22 16 37 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 38 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 39 H 0.41 7.33 8.85 -92.71 -0.82 6.51 16 40 H 0.40 9.17 8.19 -92.70 -0.76 8.41 16 Total: -1.00 -65.46 319.15 3.04 -62.43 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.52 Total: 23.54 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 5.15 Total: -22.07 kcal Atomic # 7 Polarization: -96.48 SS G_CDS: -2.70 Total: -99.18 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.91 Total: -12.01 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -65.46 3.04 -62.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310432083.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.609 kcal (2) G-P(sol) polarization free energy of solvation -65.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds