Wall clock time and date at job start Mon Mar 30 2020 07:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46904 * 2 1 4 4 C 1.53004 * 109.47273 * 239.99749 * 2 1 3 5 5 C 1.52997 * 109.46788 * 174.99940 * 4 2 1 6 6 C 1.53004 * 109.46788 * 180.02562 * 5 4 2 7 7 N 1.46904 * 109.46854 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46930 * 120.00031 * 2 1 3 9 9 C 1.39683 * 119.99648 * 274.99878 * 8 2 1 10 10 C 1.39001 * 120.04228 * 0.02562 * 9 8 2 11 11 C 1.38147 * 120.06266 * 179.97438 * 10 9 8 12 12 C 1.38171 * 120.14146 * 359.97438 * 11 10 9 13 13 C 1.38907 * 120.08205 * 0.04117 * 12 11 10 14 14 O 1.35751 * 120.03577 * 179.97438 * 13 12 11 15 15 C 1.34830 * 117.00435 * 174.48399 * 14 13 12 16 16 H 1.08001 * 119.99881 * 5.07886 * 15 14 13 17 17 C 1.38648 * 120.00230 * 185.08329 * 15 14 13 18 18 N 1.31558 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00200 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47073 * 119.99550 * 19 17 15 22 22 H 1.48500 * 109.47337 * 239.99677 * 19 17 15 23 23 C 1.38747 * 120.03557 * 179.72780 * 9 8 2 24 24 H 1.09002 * 109.47110 * 60.00202 * 1 2 3 25 25 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47106 * 300.00532 * 1 2 3 27 27 H 1.09001 * 109.46658 * 55.00441 * 4 2 1 28 28 H 1.08994 * 109.47094 * 295.00341 * 4 2 1 29 29 H 1.08993 * 109.47269 * 60.00497 * 5 4 2 30 30 H 1.09003 * 109.47484 * 299.99797 * 5 4 2 31 31 H 1.08994 * 109.47094 * 300.00401 * 6 5 4 32 32 H 1.09004 * 109.47154 * 60.00505 * 6 5 4 33 33 H 1.00909 * 110.99545 * 179.97438 * 7 6 5 34 34 H 1.00893 * 111.00169 * 303.95133 * 7 6 5 35 35 H 0.96999 * 120.00214 * 95.00194 * 8 2 1 36 36 H 1.08003 * 119.96799 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.92673 * 179.97438 * 11 10 9 38 38 H 1.08007 * 119.95672 * 180.02562 * 12 11 10 39 39 H 0.96998 * 120.00579 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.07642 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3340 -2.5631 7 7 5.5389 -1.2298 -2.6253 8 7 2.0183 -0.6906 1.1962 9 6 2.1517 0.0063 2.3994 10 6 1.8209 1.3549 2.4628 11 6 1.9521 2.0444 3.6527 12 6 2.4118 1.3963 4.7831 13 6 2.7444 0.0488 4.7263 14 8 3.1965 -0.5869 5.8373 15 6 3.3924 -1.9176 5.7442 16 1 3.2697 -2.4163 4.7941 17 6 3.7512 -2.6458 6.8682 18 7 3.9011 -2.0384 8.0254 19 14 4.0220 -4.4896 6.7393 20 1 3.7930 -4.9269 5.3388 21 1 5.4154 -4.8143 7.1372 22 1 3.0734 -5.1934 7.6395 23 6 2.6087 -0.6484 3.5341 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7715 -1.2056 29 1 3.9995 -1.0728 -0.4259 30 1 3.8532 0.4370 -1.3573 31 1 3.7865 -2.3843 -2.5199 32 1 3.6403 -0.8741 -3.4507 33 1 5.9004 -1.6988 -3.4423 34 1 5.8341 -0.2653 -2.6014 35 1 2.2490 -1.6318 1.1526 36 1 1.4609 1.8641 1.5810 37 1 1.6948 3.0923 3.6994 38 1 2.5129 1.9381 5.7119 39 1 4.1518 -2.5478 8.8118 40 1 2.8615 -1.6974 3.4889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310445072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:10 Heat of formation + Delta-G solvation = -15.869251 kcal Electronic energy + Delta-G solvation = -19567.243514 eV Core-core repulsion = 16574.881833 eV Total energy + Delta-G solvation = -2992.361681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.14902 -37.80801 -36.25127 -34.93238 -32.33764 -31.90965 -30.04648 -28.63412 -27.62851 -25.30150 -25.01511 -22.00680 -21.63892 -21.27679 -19.95124 -17.78982 -17.39192 -16.17431 -15.69906 -15.64435 -14.97683 -14.93531 -14.23926 -14.14689 -13.81087 -13.60457 -13.35758 -13.22711 -12.78068 -12.53985 -12.32716 -12.09511 -11.72442 -11.59123 -11.50334 -11.13579 -10.96077 -10.85241 -10.73711 -10.66076 -10.42942 -10.30260 -9.34917 -9.30086 -8.94958 -8.70459 -7.28376 -6.68661 -6.35750 -3.94676 2.45262 2.64373 3.18187 3.18850 3.24228 3.84323 4.04532 4.22657 4.64886 4.76134 4.85417 5.04361 5.12182 5.21388 5.26743 5.41698 5.43552 5.47214 5.63105 5.65708 5.74241 5.78986 5.94129 6.04268 6.09903 6.20830 6.30178 6.35171 6.45791 6.73032 6.73824 6.86765 7.12065 7.15766 7.22407 7.45916 7.56174 7.75059 8.10994 8.11556 8.29884 9.10776 9.84067 10.82860 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.004848 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.426292 B = 5773.980486 C = 6838.866592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.154 3.846 3 H 0.077 0.923 4 C -0.124 4.124 5 C -0.119 4.119 6 C 0.061 3.939 7 N -0.853 5.853 8 N -0.747 5.747 9 C 0.252 3.748 10 C -0.281 4.281 11 C -0.041 4.041 12 C -0.238 4.238 13 C 0.190 3.810 14 O -0.180 6.180 15 C -0.387 4.387 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.865 5.865 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.303 4.303 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.022 0.978 33 H 0.339 0.661 34 H 0.341 0.659 35 H 0.393 0.607 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.268 0.732 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 2.519 -19.695 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.048 3.952 3 H 0.094 0.906 4 C -0.162 4.162 5 C -0.156 4.156 6 C -0.069 4.069 7 N -0.382 5.382 8 N -0.378 5.378 9 C 0.151 3.849 10 C -0.303 4.303 11 C -0.060 4.060 12 C -0.259 4.259 13 C 0.135 3.865 14 O -0.083 6.083 15 C -0.464 4.464 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.501 5.501 19 Si 0.764 3.236 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.327 4.327 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.040 0.960 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.227 0.773 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.078 0.922 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.115 2.254 -18.674 19.066 hybrid contribution 0.015 -0.827 -1.038 1.327 sum -3.101 1.427 -19.712 20.005 Atomic orbital electron populations 1.22302 0.96464 1.02068 1.01902 1.20757 0.93085 0.96912 0.84478 0.90552 1.21824 0.95635 1.01229 0.97542 1.21574 0.94953 1.00612 0.98507 1.21829 0.87647 1.00715 0.96747 1.58665 1.10519 1.20911 1.48105 1.44631 1.74345 1.11877 1.06963 1.17456 0.91684 0.90865 0.84884 1.20090 1.18258 0.93482 0.98501 1.20370 0.95933 0.97817 0.91865 1.20021 1.13344 0.93269 0.99257 1.19069 0.89226 0.91629 0.86538 1.83984 1.71485 1.22554 1.30291 1.21346 1.48075 0.80135 0.96807 0.89154 1.25258 0.96878 1.00172 0.94278 1.70051 1.44386 1.36190 0.99479 0.85677 0.78258 0.80994 0.78650 1.19230 1.20226 1.20244 1.20511 1.18323 1.01256 0.92564 0.92577 0.92688 0.91832 0.91104 0.91536 0.90370 0.92179 0.91205 0.95953 0.84869 0.84705 0.77280 0.87841 0.87350 0.87033 0.92230 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 9.43 37.16 0.35 -1.49 16 2 C 0.15 1.78 2.27 -67.93 -0.15 1.63 16 3 H 0.08 0.93 6.48 -51.93 -0.34 0.60 16 4 C -0.12 -1.14 4.75 -26.73 -0.13 -1.27 16 5 C -0.12 -1.20 5.36 -26.73 -0.14 -1.34 16 6 C 0.06 0.54 6.79 -3.82 -0.03 0.52 16 7 N -0.85 -7.67 9.62 -10.36 -0.10 -7.77 16 8 N -0.75 -11.06 4.70 -52.18 -0.25 -11.30 16 9 C 0.25 4.77 6.63 -83.81 -0.56 4.21 16 10 C -0.28 -5.06 8.85 -39.33 -0.35 -5.41 16 11 C -0.04 -0.77 10.03 -39.64 -0.40 -1.17 16 12 C -0.24 -5.32 9.99 -39.36 -0.39 -5.71 16 13 C 0.19 4.79 6.65 -39.14 -0.26 4.53 16 14 O -0.18 -5.32 9.76 0.05 0.00 -5.32 16 15 C -0.39 -11.15 9.49 30.88 0.29 -10.85 16 16 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 18 N -0.87 -26.00 13.67 55.48 0.76 -25.24 16 19 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C -0.30 -6.83 9.01 -39.20 -0.35 -7.19 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.81 7.70 -51.93 -0.40 0.41 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.99 7.75 -51.93 -0.40 0.59 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.34 2.39 9.08 -39.29 -0.36 2.04 16 34 H 0.34 2.73 8.99 -39.30 -0.35 2.38 16 35 H 0.39 5.59 8.61 -40.82 -0.35 5.24 16 36 H 0.10 1.61 6.10 -52.48 -0.32 1.29 16 37 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 38 H 0.11 2.42 8.06 -52.48 -0.42 2.00 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.12 2.82 5.63 -52.49 -0.30 2.52 16 LS Contribution 330.33 15.07 4.98 4.98 Total: -1.00 -31.80 330.33 -7.87 -39.67 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.03 Total: 11.47 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: -2.21 Total: -22.57 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.41 Total: -44.31 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: 0.00 Total: -5.32 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.80 -7.87 -39.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310445072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.803 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds