Wall clock time and date at job start Mon Mar 30 2020 07:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46904 * 2 1 4 4 C 1.53004 * 109.47273 * 239.99749 * 2 1 3 5 5 C 1.52997 * 109.46788 * 174.99940 * 4 2 1 6 6 C 1.53004 * 109.46788 * 180.02562 * 5 4 2 7 7 N 1.46904 * 109.46854 * 179.97438 * 6 5 4 8 8 N 1.46498 * 109.46930 * 120.00031 * 2 1 3 9 9 C 1.39683 * 119.99648 * 274.99878 * 8 2 1 10 10 C 1.39001 * 120.04228 * 0.02562 * 9 8 2 11 11 C 1.38147 * 120.06266 * 179.97438 * 10 9 8 12 12 C 1.38171 * 120.14146 * 359.97438 * 11 10 9 13 13 C 1.38907 * 120.08205 * 0.04117 * 12 11 10 14 14 O 1.35751 * 120.03577 * 179.97438 * 13 12 11 15 15 C 1.34830 * 117.00435 * 174.48399 * 14 13 12 16 16 H 1.08001 * 119.99881 * 5.07886 * 15 14 13 17 17 C 1.38648 * 120.00230 * 185.08329 * 15 14 13 18 18 N 1.31558 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00200 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47169 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47073 * 119.99550 * 19 17 15 22 22 H 1.48500 * 109.47337 * 239.99677 * 19 17 15 23 23 C 1.38747 * 120.03557 * 179.72780 * 9 8 2 24 24 H 1.09002 * 109.47110 * 60.00202 * 1 2 3 25 25 H 1.08999 * 109.46904 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47106 * 300.00532 * 1 2 3 27 27 H 1.09001 * 109.46658 * 55.00441 * 4 2 1 28 28 H 1.08994 * 109.47094 * 295.00341 * 4 2 1 29 29 H 1.08993 * 109.47269 * 60.00497 * 5 4 2 30 30 H 1.09003 * 109.47484 * 299.99797 * 5 4 2 31 31 H 1.08994 * 109.47094 * 300.00401 * 6 5 4 32 32 H 1.09004 * 109.47154 * 60.00505 * 6 5 4 33 33 H 1.00909 * 110.99545 * 179.97438 * 7 6 5 34 34 H 1.00893 * 111.00169 * 303.95133 * 7 6 5 35 35 H 0.96999 * 120.00214 * 95.00194 * 8 2 1 36 36 H 1.08003 * 119.96799 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.92673 * 179.97438 * 11 10 9 38 38 H 1.08007 * 119.95672 * 180.02562 * 12 11 10 39 39 H 0.96998 * 120.00579 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.07642 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3340 -2.5631 7 7 5.5389 -1.2298 -2.6253 8 7 2.0183 -0.6906 1.1962 9 6 2.1517 0.0063 2.3994 10 6 1.8209 1.3549 2.4628 11 6 1.9521 2.0444 3.6527 12 6 2.4118 1.3963 4.7831 13 6 2.7444 0.0488 4.7263 14 8 3.1965 -0.5869 5.8373 15 6 3.3924 -1.9176 5.7442 16 1 3.2697 -2.4163 4.7941 17 6 3.7512 -2.6458 6.8682 18 7 3.9011 -2.0384 8.0254 19 14 4.0220 -4.4896 6.7393 20 1 3.7930 -4.9269 5.3388 21 1 5.4154 -4.8143 7.1372 22 1 3.0734 -5.1934 7.6395 23 6 2.6087 -0.6484 3.5341 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.6055 -0.2617 -2.1369 28 1 1.7517 -1.7715 -1.2056 29 1 3.9995 -1.0728 -0.4259 30 1 3.8532 0.4370 -1.3573 31 1 3.7865 -2.3843 -2.5199 32 1 3.6403 -0.8741 -3.4507 33 1 5.9004 -1.6988 -3.4423 34 1 5.8341 -0.2653 -2.6014 35 1 2.2490 -1.6318 1.1526 36 1 1.4609 1.8641 1.5810 37 1 1.6948 3.0923 3.6994 38 1 2.5129 1.9381 5.7119 39 1 4.1518 -2.5478 8.8118 40 1 2.8615 -1.6974 3.4889 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310445072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:10 Heat of formation + Delta-G solvation = -38.499547 kcal Electronic energy + Delta-G solvation = -19568.224837 eV Core-core repulsion = 16574.881833 eV Total energy + Delta-G solvation = -2993.343005 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80606 -39.23083 -37.58405 -35.97691 -34.25485 -33.25329 -31.08025 -30.21593 -29.10302 -27.24237 -25.91076 -23.51472 -22.99217 -22.21057 -21.30280 -19.62812 -19.09007 -17.18867 -17.00564 -16.82080 -16.46063 -16.10873 -15.80833 -15.54334 -15.47497 -14.82140 -14.60317 -14.48990 -14.28172 -13.87469 -13.52348 -13.39496 -13.15229 -12.95077 -12.70703 -12.44656 -12.35534 -12.15656 -12.07619 -11.88879 -11.73955 -11.48598 -11.25771 -10.92599 -10.58043 -9.60288 -9.08306 -8.44663 -8.17742 -6.12801 0.79023 0.95276 1.34132 1.43819 1.52562 2.18926 2.60776 2.90626 3.29040 3.53023 3.61411 3.88273 4.07164 4.20309 4.25054 4.30444 4.45615 4.53749 4.61077 4.66707 4.68431 4.75006 4.85398 4.89263 4.96437 5.02634 5.13918 5.17208 5.18452 5.33799 5.38552 5.44878 5.52731 5.77914 5.83165 6.07038 6.14960 6.24903 6.58251 6.67164 6.91845 7.01066 7.84800 8.79336 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.004848 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.426292 B = 5773.980486 C = 6838.866592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.148 3.852 3 H 0.079 0.921 4 C -0.114 4.114 5 C -0.115 4.115 6 C 0.064 3.936 7 N -0.869 5.869 8 N -0.737 5.737 9 C 0.261 3.739 10 C -0.264 4.264 11 C -0.027 4.027 12 C -0.265 4.265 13 C 0.153 3.847 14 O -0.234 6.234 15 C -0.409 4.409 16 H 0.098 0.902 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.254 1.254 21 H -0.268 1.268 22 H -0.267 1.267 23 C -0.319 4.319 24 H 0.084 0.916 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.041 0.959 33 H 0.349 0.651 34 H 0.345 0.655 35 H 0.396 0.604 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.105 0.895 39 H 0.272 0.728 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 2.710 -23.463 24.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.096 0.904 4 C -0.152 4.152 5 C -0.153 4.153 6 C -0.067 4.067 7 N -0.400 5.400 8 N -0.366 5.366 9 C 0.157 3.843 10 C -0.287 4.287 11 C -0.045 4.045 12 C -0.286 4.286 13 C 0.101 3.899 14 O -0.140 6.140 15 C -0.486 4.486 16 H 0.115 0.885 17 C -0.221 4.221 18 N -0.561 5.561 19 Si 0.838 3.162 20 H -0.177 1.177 21 H -0.193 1.193 22 H -0.192 1.192 23 C -0.343 4.343 24 H 0.103 0.897 25 H 0.072 0.928 26 H 0.064 0.936 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.230 0.770 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.123 0.877 39 H 0.081 0.919 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.290 2.463 -22.535 23.071 hybrid contribution 0.276 -0.681 -0.163 0.752 sum -4.015 1.783 -22.698 23.119 Atomic orbital electron populations 1.22258 0.95344 1.02257 1.02456 1.21057 0.93818 0.96953 0.83808 0.90350 1.21770 0.94817 1.01474 0.97161 1.21516 0.95592 1.00343 0.97867 1.21786 0.87650 1.00546 0.96692 1.58663 1.10878 1.21494 1.49009 1.44841 1.73036 1.12095 1.06651 1.17540 0.90087 0.91504 0.85202 1.20560 1.15779 0.92880 0.99445 1.20826 0.93498 0.99653 0.90571 1.20241 1.15099 0.92500 1.00717 1.19643 0.90631 0.92950 0.86629 1.83942 1.74321 1.23060 1.32702 1.21814 1.48572 0.80603 0.97583 0.88498 1.26568 0.96229 1.05775 0.93523 1.70195 1.46749 1.38590 1.00560 0.84541 0.78547 0.73764 0.79392 1.17738 1.19257 1.19205 1.20515 1.19640 1.00844 0.93324 0.89685 0.92774 0.93599 0.88335 0.91121 0.93470 0.92295 0.91454 0.94107 0.83735 0.84225 0.77000 0.84039 0.83135 0.87723 0.91910 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.43 71.98 0.68 -2.25 16 2 C 0.15 2.89 2.27 44.99 0.10 2.99 16 3 H 0.08 1.55 6.48 -2.39 -0.02 1.53 16 4 C -0.11 -1.66 4.75 30.59 0.15 -1.52 16 5 C -0.12 -2.04 5.36 30.59 0.16 -1.88 16 6 C 0.06 0.96 6.79 86.30 0.59 1.55 16 7 N -0.87 -14.04 9.62 -186.71 -1.80 -15.84 16 8 N -0.74 -20.32 4.70 -319.01 -1.50 -21.82 16 9 C 0.26 9.53 6.63 38.19 0.25 9.78 16 10 C -0.26 -8.71 8.85 22.43 0.20 -8.51 16 11 C -0.03 -0.95 10.03 22.23 0.22 -0.73 16 12 C -0.26 -12.09 9.99 22.41 0.22 -11.87 16 13 C 0.15 8.10 6.65 22.56 0.15 8.25 16 14 O -0.23 -14.81 9.76 -22.75 -0.22 -15.04 16 15 C -0.41 -24.95 9.49 67.92 0.64 -24.31 16 16 H 0.10 5.50 5.20 -2.91 -0.02 5.49 16 17 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 18 N -0.92 -58.40 13.67 21.61 0.30 -58.11 16 19 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 20 H -0.25 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 C -0.32 -14.83 9.01 22.52 0.20 -14.62 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.04 0.99 7.70 -2.39 -0.02 0.97 16 27 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.35 4.28 9.08 -89.69 -0.81 3.47 16 34 H 0.34 4.93 8.99 -89.70 -0.81 4.13 16 35 H 0.40 10.73 8.61 -92.71 -0.80 9.93 16 36 H 0.14 3.66 6.10 -2.91 -0.02 3.64 16 37 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 38 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 39 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 40 H 0.11 5.27 5.63 -2.91 -0.02 5.26 16 Total: -1.00 -74.57 330.33 1.49 -73.08 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -1.35 Total: 35.22 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 4.04 Total: -44.07 kcal Atomic # 7 Polarization: -92.76 SS G_CDS: -3.00 Total: -95.76 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.22 Total: -15.04 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -74.57 1.49 -73.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310445072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.584 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds