Wall clock time and date at job start Mon Mar 30 2020 07:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99999 * 2 1 4 4 H 1.48499 * 109.47405 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47140 * 30.00016 * 3 2 1 6 6 H 1.48499 * 109.47181 * 149.99673 * 3 2 1 7 7 C 1.37873 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99700 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00267 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.47928 * 300.02231 * 9 7 2 11 11 C 1.53085 * 109.48209 * 180.02562 * 9 7 2 12 12 C 1.53174 * 109.18688 * 182.41773 * 11 9 7 13 13 C 1.53184 * 109.02065 * 56.97526 * 12 11 9 14 14 C 1.53091 * 109.14069 * 303.01346 * 13 12 11 15 15 C 1.52993 * 109.42142 * 297.65748 * 14 13 12 16 16 C 1.53016 * 109.43798 * 300.15080 * 15 14 13 17 17 C 1.53002 * 109.45764 * 299.99040 * 16 15 14 18 18 C 1.52999 * 109.50248 * 59.98165 * 17 16 15 19 19 H 1.09000 * 109.47160 * 60.02255 * 18 17 16 20 20 C 1.52992 * 109.47283 * 180.02562 * 18 17 16 21 21 C 1.53009 * 117.49739 * 248.74330 * 20 18 17 22 22 C 1.53004 * 117.49901 * 180.08486 * 20 18 17 23 23 C 1.52988 * 109.43299 * 177.70087 * 14 13 12 24 24 O 1.42871 * 109.43903 * 57.64946 * 14 13 12 25 25 H 0.96999 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.51866 * 62.50461 * 11 9 7 27 27 H 1.09004 * 109.56814 * 302.36147 * 11 9 7 28 28 H 1.09006 * 109.54709 * 297.11505 * 12 11 9 29 29 H 1.08994 * 109.62913 * 176.88476 * 12 11 9 30 30 H 1.08997 * 109.52736 * 183.11737 * 13 12 11 31 31 H 1.09003 * 109.58059 * 62.94664 * 13 12 11 32 32 H 1.09005 * 109.47193 * 60.13407 * 15 14 13 33 33 H 1.08996 * 109.48251 * 180.15849 * 15 14 13 34 34 H 1.09002 * 109.47504 * 59.98634 * 16 15 14 35 35 H 1.08995 * 109.47094 * 179.97438 * 16 15 14 36 36 H 1.08998 * 109.46644 * 299.97407 * 17 16 15 37 37 H 1.09002 * 109.46471 * 179.97438 * 17 16 15 38 38 H 1.09004 * 115.55384 * 34.41376 * 20 18 17 39 39 H 1.08997 * 117.49704 * 0.02562 * 21 20 18 40 40 H 1.08998 * 117.49539 * 145.02030 * 21 20 18 41 41 H 1.08994 * 117.50321 * 214.97508 * 22 20 18 42 42 H 1.08998 * 117.49754 * 0.02562 * 22 20 18 43 43 H 1.09001 * 109.47520 * 299.87103 * 23 14 13 44 44 H 1.08995 * 109.47692 * 179.84545 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8754 -0.6801 -0.8886 11 6 4.0221 -2.6372 0.0010 12 6 5.5526 -2.6298 0.0626 13 6 5.9984 -1.8556 1.3069 14 6 5.4118 -0.4425 1.2558 15 6 5.9586 0.2913 0.0297 16 6 7.4839 0.3708 0.1222 17 6 7.8787 1.1308 1.3900 18 6 7.3308 0.3981 2.6163 19 1 7.7457 -0.6092 2.6532 20 6 7.7254 1.1590 3.8836 21 6 8.7428 0.4985 4.8162 22 6 7.2700 0.5812 5.2252 23 6 5.8055 0.3183 2.5233 24 8 3.9879 -0.5216 1.1686 25 1 -0.4849 0.8401 0.0004 26 1 3.6967 -3.1386 -0.9106 27 1 3.6252 -3.1650 0.8683 28 1 5.9512 -2.1469 -0.8296 29 1 5.9217 -3.6538 0.1186 30 1 7.0866 -1.7977 1.3295 31 1 5.6420 -2.3658 2.2018 32 1 5.6770 -0.2503 -0.8734 33 1 5.5437 1.2986 -0.0061 34 1 7.8988 -0.6366 0.1583 35 1 7.8741 0.8930 -0.7513 36 1 7.4642 2.1382 1.3536 37 1 8.9653 1.1871 1.4562 38 1 7.7600 2.2443 3.7888 39 1 9.1313 -0.4779 4.5266 40 1 9.4465 1.1493 5.3351 41 1 7.0055 1.2863 6.0131 42 1 6.6897 -0.3412 5.2049 43 1 5.4151 -0.2040 3.3968 44 1 5.3905 1.3255 2.4864 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310456516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:17 Heat of formation + Delta-G solvation = -45.214544 kcal Electronic energy + Delta-G solvation = -21896.231306 eV Core-core repulsion = 19006.137460 eV Total energy + Delta-G solvation = -2890.093845 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.19483 -37.81965 -35.43938 -32.76236 -32.57070 -30.72333 -30.14417 -27.46802 -25.24510 -23.57232 -22.58474 -22.01864 -21.57617 -20.51364 -19.50305 -17.80760 -16.74414 -16.25781 -15.40556 -15.15275 -14.45907 -14.33507 -14.04999 -13.90201 -13.56625 -13.10751 -12.87254 -12.48607 -12.29770 -12.23308 -11.67143 -11.59161 -11.55849 -11.37752 -11.06379 -10.91850 -10.81791 -10.65346 -10.38862 -10.27621 -10.14512 -10.07947 -9.87051 -9.73334 -9.63796 -9.34861 -8.88809 -8.46823 -7.91940 -6.06505 -4.13889 3.41312 3.48722 3.70735 3.76784 4.48040 4.58170 4.67901 4.85087 4.98089 5.00170 5.17433 5.23808 5.34284 5.41598 5.45319 5.53120 5.57614 5.60035 5.68983 5.72534 5.77380 5.83767 5.89938 5.92722 6.00675 6.05964 6.07884 6.19202 6.21314 6.24243 6.30540 6.39701 6.47165 6.51259 6.56800 6.61242 6.70858 6.81434 6.86416 6.89178 7.28499 7.70936 8.48817 8.65907 8.97406 9.58262 11.03855 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.007082 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.330003 B = 3952.630875 C = 4322.913814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.866 3.134 4 H -0.289 1.289 5 H -0.296 1.296 6 H -0.214 1.214 7 C -0.515 4.515 8 H 0.077 0.923 9 C 0.185 3.815 10 H 0.015 0.985 11 C -0.133 4.133 12 C -0.123 4.123 13 C -0.138 4.138 14 C 0.115 3.885 15 C -0.148 4.148 16 C -0.117 4.117 17 C -0.110 4.110 18 C -0.054 4.054 19 H 0.072 0.928 20 C -0.144 4.144 21 C -0.183 4.183 22 C -0.179 4.179 23 C -0.095 4.095 24 O -0.366 6.366 25 H 0.264 0.736 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.066 0.934 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.289 1.128 4.984 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.121 4.121 3 Si 0.693 3.307 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.137 1.137 7 C -0.552 4.552 8 H 0.095 0.905 9 C 0.129 3.871 10 H 0.032 0.968 11 C -0.171 4.171 12 C -0.161 4.161 13 C -0.176 4.176 14 C 0.075 3.925 15 C -0.185 4.185 16 C -0.155 4.155 17 C -0.147 4.147 18 C -0.073 4.073 19 H 0.091 0.909 20 C -0.162 4.162 21 C -0.220 4.220 22 C -0.216 4.216 23 C -0.132 4.132 24 O -0.286 6.286 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.085 0.915 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.011 1.295 5.129 18.772 hybrid contribution 0.331 0.757 -0.201 0.850 sum 18.342 2.052 4.929 19.103 Atomic orbital electron populations 1.69938 1.06743 1.27356 1.49107 1.25042 0.94620 0.99889 0.92521 0.87152 0.83399 0.82099 0.78085 1.21564 1.22236 1.13662 1.20948 0.87617 0.94725 1.51872 0.90470 1.20118 0.94703 0.87614 0.84651 0.96797 1.22050 0.93148 1.00353 1.01587 1.21679 0.97720 0.98962 0.97713 1.22202 0.99727 0.96987 0.98676 1.21122 0.85135 0.92645 0.93613 1.22227 0.94899 1.01573 0.99835 1.21557 0.96323 1.00394 0.97209 1.21551 0.99775 0.99294 0.94114 1.20774 0.95714 0.98519 0.92270 0.90927 1.22349 1.03524 0.99141 0.91161 1.23001 0.92460 1.02268 1.04290 1.22942 0.97070 1.03397 0.98215 1.21463 0.93678 1.00883 0.97200 1.88426 1.15961 1.77469 1.46740 0.92632 0.92236 0.92119 0.92467 0.93094 0.91992 0.91937 0.91222 0.91636 0.91822 0.92399 0.92058 0.92327 0.88105 0.89013 0.89295 0.89094 0.88574 0.91521 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 3 Si 0.87 22.03 26.99 -169.99 -4.59 17.44 16 4 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 5 H -0.30 -7.63 7.11 56.52 0.40 -7.22 16 6 H -0.21 -5.12 4.04 56.52 0.23 -4.89 16 7 C -0.51 -14.85 9.38 -34.44 -0.32 -15.17 16 8 H 0.08 2.39 7.99 -52.49 -0.42 1.97 16 9 C 0.18 4.42 1.66 -27.84 -0.05 4.37 16 10 H 0.01 0.35 5.77 -51.93 -0.30 0.05 16 11 C -0.13 -2.73 5.35 -26.60 -0.14 -2.87 16 12 C -0.12 -2.04 5.72 -26.55 -0.15 -2.19 16 13 C -0.14 -2.21 4.21 -26.59 -0.11 -2.33 16 14 C 0.12 2.07 0.73 -90.58 -0.07 2.00 16 15 C -0.15 -2.48 3.99 -26.73 -0.11 -2.59 16 16 C -0.12 -1.53 5.65 -26.72 -0.15 -1.68 16 17 C -0.11 -1.32 5.18 -26.73 -0.14 -1.46 16 18 C -0.05 -0.68 2.07 -90.62 -0.19 -0.87 16 19 H 0.07 0.89 6.23 -51.93 -0.32 0.57 16 20 C -0.14 -1.61 5.15 -90.62 -0.47 -2.07 16 21 C -0.18 -1.79 10.18 -26.69 -0.27 -2.06 16 22 C -0.18 -1.93 9.74 -26.69 -0.26 -2.19 16 23 C -0.09 -1.51 4.23 -26.73 -0.11 -1.63 16 24 O -0.37 -8.46 6.81 -35.23 -0.24 -8.70 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.06 0.91 6.61 -51.93 -0.34 0.57 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.85 4.80 -51.93 -0.25 0.60 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.23 4.97 -51.93 -0.26 0.97 16 33 H 0.06 1.19 7.22 -51.93 -0.37 0.81 16 34 H 0.06 0.79 6.36 -51.93 -0.33 0.46 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.10 8.11 -51.93 -0.42 0.68 16 39 H 0.09 0.86 8.05 -51.93 -0.42 0.45 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.10 1.09 7.61 -51.93 -0.40 0.70 16 43 H 0.07 1.09 7.29 -51.93 -0.38 0.71 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 315.46 15.07 4.75 4.75 Total: -1.00 -30.48 315.46 -9.68 -40.16 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.75 Total: 1.82 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: -2.63 Total: -28.36 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.24 Total: -8.70 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.59 Total: 17.44 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.48 -9.68 -40.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310456516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.054 kcal (2) G-P(sol) polarization free energy of solvation -30.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds