Wall clock time and date at job start Mon Mar 30 2020 07:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99999 * 2 1 4 4 H 1.48499 * 109.47405 * 269.99940 * 3 2 1 5 5 H 1.48499 * 109.47140 * 30.00016 * 3 2 1 6 6 H 1.48499 * 109.47181 * 149.99673 * 3 2 1 7 7 C 1.37873 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99700 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00267 * 180.02562 * 7 2 1 10 10 H 1.09006 * 109.47928 * 300.02231 * 9 7 2 11 11 C 1.53085 * 109.48209 * 180.02562 * 9 7 2 12 12 C 1.53174 * 109.18688 * 182.41773 * 11 9 7 13 13 C 1.53184 * 109.02065 * 56.97526 * 12 11 9 14 14 C 1.53091 * 109.14069 * 303.01346 * 13 12 11 15 15 C 1.52993 * 109.42142 * 297.65748 * 14 13 12 16 16 C 1.53016 * 109.43798 * 300.15080 * 15 14 13 17 17 C 1.53002 * 109.45764 * 299.99040 * 16 15 14 18 18 C 1.52999 * 109.50248 * 59.98165 * 17 16 15 19 19 H 1.09000 * 109.47160 * 60.02255 * 18 17 16 20 20 C 1.52992 * 109.47283 * 180.02562 * 18 17 16 21 21 C 1.53009 * 117.49739 * 248.74330 * 20 18 17 22 22 C 1.53004 * 117.49901 * 180.08486 * 20 18 17 23 23 C 1.52988 * 109.43299 * 177.70087 * 14 13 12 24 24 O 1.42871 * 109.43903 * 57.64946 * 14 13 12 25 25 H 0.96999 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.51866 * 62.50461 * 11 9 7 27 27 H 1.09004 * 109.56814 * 302.36147 * 11 9 7 28 28 H 1.09006 * 109.54709 * 297.11505 * 12 11 9 29 29 H 1.08994 * 109.62913 * 176.88476 * 12 11 9 30 30 H 1.08997 * 109.52736 * 183.11737 * 13 12 11 31 31 H 1.09003 * 109.58059 * 62.94664 * 13 12 11 32 32 H 1.09005 * 109.47193 * 60.13407 * 15 14 13 33 33 H 1.08996 * 109.48251 * 180.15849 * 15 14 13 34 34 H 1.09002 * 109.47504 * 59.98634 * 16 15 14 35 35 H 1.08995 * 109.47094 * 179.97438 * 16 15 14 36 36 H 1.08998 * 109.46644 * 299.97407 * 17 16 15 37 37 H 1.09002 * 109.46471 * 179.97438 * 17 16 15 38 38 H 1.09004 * 115.55384 * 34.41376 * 20 18 17 39 39 H 1.08997 * 117.49704 * 0.02562 * 21 20 18 40 40 H 1.08998 * 117.49539 * 145.02030 * 21 20 18 41 41 H 1.08994 * 117.50321 * 214.97508 * 22 20 18 42 42 H 1.08998 * 117.49754 * 0.02562 * 22 20 18 43 43 H 1.09001 * 109.47520 * 299.87103 * 23 14 13 44 44 H 1.08995 * 109.47692 * 179.84545 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8754 -0.6801 -0.8886 11 6 4.0221 -2.6372 0.0010 12 6 5.5526 -2.6298 0.0626 13 6 5.9984 -1.8556 1.3069 14 6 5.4118 -0.4425 1.2558 15 6 5.9586 0.2913 0.0297 16 6 7.4839 0.3708 0.1222 17 6 7.8787 1.1308 1.3900 18 6 7.3308 0.3981 2.6163 19 1 7.7457 -0.6092 2.6532 20 6 7.7254 1.1590 3.8836 21 6 8.7428 0.4985 4.8162 22 6 7.2700 0.5812 5.2252 23 6 5.8055 0.3183 2.5233 24 8 3.9879 -0.5216 1.1686 25 1 -0.4849 0.8401 0.0004 26 1 3.6967 -3.1386 -0.9106 27 1 3.6252 -3.1650 0.8683 28 1 5.9512 -2.1469 -0.8296 29 1 5.9217 -3.6538 0.1186 30 1 7.0866 -1.7977 1.3295 31 1 5.6420 -2.3658 2.2018 32 1 5.6770 -0.2503 -0.8734 33 1 5.5437 1.2986 -0.0061 34 1 7.8988 -0.6366 0.1583 35 1 7.8741 0.8930 -0.7513 36 1 7.4642 2.1382 1.3536 37 1 8.9653 1.1871 1.4562 38 1 7.7600 2.2443 3.7888 39 1 9.1313 -0.4779 4.5266 40 1 9.4465 1.1493 5.3351 41 1 7.0055 1.2863 6.0131 42 1 6.6897 -0.3412 5.2049 43 1 5.4151 -0.2040 3.3968 44 1 5.3905 1.3255 2.4864 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310456516.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:16 Heat of formation + Delta-G solvation = -61.657161 kcal Electronic energy + Delta-G solvation = -21896.944311 eV Core-core repulsion = 19006.137460 eV Total energy + Delta-G solvation = -2890.806851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.53042 -38.96720 -36.65012 -34.68560 -34.29716 -32.20848 -31.33101 -29.06741 -26.98277 -24.66767 -23.83709 -23.35229 -22.64769 -21.76618 -20.69055 -19.19408 -18.93062 -17.47871 -17.10098 -16.25554 -15.92512 -15.64669 -15.41473 -15.19668 -15.03392 -14.58658 -14.46529 -13.86034 -13.74806 -13.52402 -13.19367 -12.93635 -12.74088 -12.62456 -12.43177 -12.35458 -12.18122 -12.00831 -11.83341 -11.62335 -11.54013 -11.42465 -11.25200 -11.14806 -10.91170 -10.80560 -10.64729 -10.36865 -9.60906 -8.36227 -6.47808 1.33978 1.38238 1.66491 2.41978 2.79368 2.99744 3.45193 3.68930 3.77457 4.00457 4.06795 4.11915 4.14575 4.16236 4.24461 4.28964 4.40071 4.42351 4.57572 4.63887 4.67168 4.71836 4.73681 4.80471 4.85852 4.87835 4.98566 4.99395 5.10931 5.13956 5.17663 5.23309 5.26071 5.31716 5.32283 5.33724 5.38719 5.43603 5.47760 5.60722 5.65300 5.71060 6.24188 6.57154 7.00701 7.29965 8.77899 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.007082 C = 0.006476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.330003 B = 3952.630875 C = 4322.913814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.027 3.973 3 Si 0.928 3.072 4 H -0.281 1.281 5 H -0.300 1.300 6 H -0.194 1.194 7 C -0.527 4.527 8 H 0.037 0.963 9 C 0.192 3.808 10 H 0.016 0.984 11 C -0.133 4.133 12 C -0.116 4.116 13 C -0.132 4.132 14 C 0.101 3.899 15 C -0.148 4.148 16 C -0.111 4.111 17 C -0.108 4.108 18 C -0.045 4.045 19 H 0.082 0.918 20 C -0.153 4.153 21 C -0.164 4.164 22 C -0.192 4.192 23 C -0.092 4.092 24 O -0.395 6.395 25 H 0.266 0.734 26 H 0.058 0.942 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.046 0.954 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.055 0.945 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.657 1.603 5.286 23.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.172 4.172 3 Si 0.752 3.248 4 H -0.207 1.207 5 H -0.227 1.227 6 H -0.116 1.116 7 C -0.564 4.564 8 H 0.055 0.945 9 C 0.136 3.864 10 H 0.033 0.967 11 C -0.171 4.171 12 C -0.153 4.153 13 C -0.170 4.170 14 C 0.062 3.938 15 C -0.186 4.186 16 C -0.148 4.148 17 C -0.145 4.145 18 C -0.063 4.063 19 H 0.100 0.900 20 C -0.172 4.172 21 C -0.201 4.201 22 C -0.229 4.229 23 C -0.129 4.129 24 O -0.316 6.316 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.074 0.926 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 22.401 1.755 5.433 23.118 hybrid contribution -1.079 0.536 -0.257 1.231 sum 21.323 2.291 5.176 22.061 Atomic orbital electron populations 1.70073 1.08490 1.28283 1.51379 1.25928 0.95327 1.03667 0.92320 0.86208 0.82748 0.77330 0.78502 1.20726 1.22726 1.11562 1.21300 0.90789 0.93155 1.51195 0.94480 1.19807 0.91640 0.89970 0.84968 0.96695 1.21974 0.96581 0.97710 1.00806 1.21644 0.94082 1.01011 0.98546 1.22171 1.01608 0.95137 0.98060 1.21540 0.82265 0.94692 0.95309 1.22210 0.97930 0.99976 0.98480 1.21542 0.93019 1.01735 0.98490 1.21559 1.01303 0.98618 0.93017 1.20697 0.92643 0.99470 0.93484 0.89961 1.22319 1.04930 0.99268 0.90644 1.23075 0.91782 1.02604 1.02600 1.22977 0.98405 1.03182 0.98369 1.21462 0.96558 0.99192 0.95716 1.88276 1.19866 1.77551 1.45865 0.92529 0.92376 0.93767 0.91235 0.90301 0.88522 0.92683 0.92256 0.93481 0.90335 0.90819 0.92681 0.89667 0.87844 0.88225 0.87782 0.88662 0.89595 0.92577 0.93491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.41 13.96 21.45 0.30 -61.11 16 2 C 0.03 1.63 5.47 84.65 0.46 2.09 16 3 Si 0.93 46.80 26.99 68.60 1.85 48.65 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 6 H -0.19 -9.07 4.04 99.48 0.40 -8.67 16 7 C -0.53 -31.74 9.38 25.60 0.24 -31.50 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C 0.19 9.29 1.66 29.88 0.05 9.34 16 10 H 0.02 0.74 5.77 -2.38 -0.01 0.73 16 11 C -0.13 -5.41 5.35 30.68 0.16 -5.24 16 12 C -0.12 -3.49 5.72 30.71 0.18 -3.31 16 13 C -0.13 -3.83 4.21 30.69 0.13 -3.70 16 14 C 0.10 3.46 0.73 -10.77 -0.01 3.45 16 15 C -0.15 -4.61 3.99 30.60 0.12 -4.49 16 16 C -0.11 -2.39 5.65 30.60 0.17 -2.22 16 17 C -0.11 -2.12 5.18 30.59 0.16 -1.96 16 18 C -0.04 -0.97 2.07 -10.79 -0.02 -0.99 16 19 H 0.08 1.64 6.23 -2.39 -0.01 1.63 16 20 C -0.15 -2.96 5.15 -10.79 -0.06 -3.01 16 21 C -0.16 -2.56 10.18 30.62 0.31 -2.25 16 22 C -0.19 -3.73 9.74 30.62 0.30 -3.43 16 23 C -0.09 -2.78 4.23 30.60 0.13 -2.65 16 24 O -0.39 -18.23 6.81 -148.98 -1.01 -19.24 16 25 H 0.27 16.25 8.31 -92.71 -0.77 15.47 16 26 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 28 H 0.07 1.96 6.61 -2.38 -0.02 1.94 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 2.16 4.80 -2.39 -0.01 2.15 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.06 1.95 4.97 -2.38 -0.01 1.94 16 33 H 0.05 1.62 7.22 -2.39 -0.02 1.60 16 34 H 0.08 1.50 6.36 -2.39 -0.02 1.48 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.95 8.11 -2.38 -0.02 1.93 16 39 H 0.10 1.43 8.05 -2.39 -0.02 1.41 16 40 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.09 1.83 7.61 -2.39 -0.02 1.81 16 43 H 0.06 1.79 7.29 -2.39 -0.02 1.77 16 44 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -69.34 315.46 4.12 -65.22 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.65 Total: 16.35 kcal Atomic # 6 Polarization: -52.21 SS G_CDS: 2.33 Total: -49.88 kcal Atomic # 7 Polarization: -61.41 SS G_CDS: 0.30 Total: -61.11 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -1.01 Total: -19.24 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.85 Total: 48.65 kcal Total: -69.34 4.12 -65.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310456516.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.564 kcal (2) G-P(sol) polarization free energy of solvation -69.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds