Wall clock time and date at job start Mon Mar 30 2020 07:26:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50707 * 110.27582 * 2 1 4 4 H 1.08001 * 119.99752 * 120.69724 * 3 2 1 5 5 C 1.37876 * 119.99907 * 300.70291 * 3 2 1 6 6 N 1.31515 * 120.00131 * 179.97438 * 5 3 2 7 7 Si 1.86798 * 119.99850 * 359.97438 * 5 3 2 8 8 H 1.48494 * 109.47371 * 89.99975 * 7 5 3 9 9 H 1.48507 * 109.47064 * 210.00027 * 7 5 3 10 10 H 1.48498 * 109.47208 * 329.99691 * 7 5 3 11 11 C 1.54948 * 110.31143 * 122.08962 * 2 1 3 12 12 C 1.55305 * 100.94003 * 82.47151 * 11 2 1 13 13 C 1.54373 * 102.25332 * 34.13395 * 12 11 2 14 14 C 1.53007 * 109.83113 * 98.15487 * 13 12 11 15 15 C 1.53773 * 113.61399 * 282.91429 * 14 13 12 16 16 C 1.53782 * 87.08159 * 220.01607 * 15 14 13 17 17 C 1.53781 * 113.61526 * 185.41322 * 14 13 12 18 18 C 1.53004 * 109.83222 * 219.12867 * 13 12 11 19 19 C 1.53774 * 113.61336 * 42.67805 * 18 13 12 20 20 C 1.53778 * 87.08351 * 220.01982 * 19 18 13 21 21 C 1.53779 * 87.08082 * 25.43263 * 20 19 18 22 22 O 1.43240 * 107.59160 * 338.64375 * 13 12 11 23 23 H 1.09001 * 109.47257 * 293.55029 * 1 2 3 24 24 H 1.08993 * 109.47799 * 53.55087 * 1 2 3 25 25 H 1.08995 * 109.47153 * 173.55634 * 1 2 3 26 26 H 0.97000 * 119.99889 * 180.02562 * 6 5 3 27 27 H 1.09002 * 111.12588 * 200.39321 * 11 2 1 28 28 H 1.08999 * 111.12425 * 324.55009 * 11 2 1 29 29 H 1.08999 * 110.84648 * 152.32694 * 12 11 2 30 30 H 1.09001 * 110.84850 * 275.94144 * 12 11 2 31 31 H 1.08995 * 112.84471 * 54.22395 * 14 13 12 32 32 H 1.08998 * 113.61735 * 334.56543 * 15 14 13 33 33 H 1.09007 * 113.61348 * 105.47372 * 15 14 13 34 34 H 1.09000 * 113.61787 * 270.88799 * 16 15 14 35 35 H 1.08998 * 113.61431 * 139.98344 * 16 15 14 36 36 H 1.08994 * 113.61762 * 254.53417 * 17 14 13 37 37 H 1.09000 * 113.61240 * 25.43993 * 17 14 13 38 38 H 1.08997 * 112.84856 * 173.98513 * 18 13 12 39 39 H 1.09002 * 113.61617 * 334.57362 * 19 18 13 40 40 H 1.09000 * 113.61614 * 105.47037 * 19 18 13 41 41 H 1.08997 * 113.61077 * 270.88240 * 20 19 18 42 42 H 1.09002 * 113.61543 * 139.98067 * 20 19 18 43 43 H 1.08997 * 113.61689 * 220.02442 * 21 20 19 44 44 H 1.08995 * 113.61576 * 89.11280 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0522 1.4137 0.0000 4 1 2.6872 1.7547 0.8043 5 6 1.7192 2.2716 -1.0267 6 7 2.1745 3.5054 -1.0265 7 14 0.6213 1.6814 -2.4180 8 1 -0.7992 1.9417 -2.0721 9 1 0.9684 2.4090 -3.6652 10 1 0.8219 0.2244 -2.6228 11 6 2.0678 -0.7720 1.2311 12 6 1.9827 -2.2364 0.7210 13 6 2.2971 -2.0785 -0.7821 14 6 3.7699 -2.4022 -1.0412 15 6 4.7300 -1.2728 -0.6321 16 6 5.5224 -1.5897 -1.9114 17 6 4.2112 -2.1454 -2.4918 18 6 1.4063 -3.0158 -1.6000 19 6 -0.0552 -3.0485 -1.1230 20 6 -0.0224 -4.5645 -1.3787 21 6 1.4986 -4.4881 -1.1657 22 8 2.0285 -0.7178 -1.1400 23 1 -0.3634 0.4106 0.9421 24 1 -0.3634 0.6105 -0.8266 25 1 -0.3633 -1.0211 -0.1153 26 1 1.9399 4.1091 -1.7486 27 1 3.0979 -0.4918 1.4512 28 1 1.4274 -0.6208 2.1001 29 1 2.7298 -2.8615 1.2100 30 1 0.9811 -2.6406 0.8674 31 1 4.0605 -3.3825 -0.6635 32 1 4.2695 -0.2849 -0.6372 33 1 5.2814 -1.4793 0.2853 34 1 6.2935 -2.3473 -1.7711 35 1 5.8881 -0.7031 -2.4294 36 1 4.3436 -3.0562 -3.0756 37 1 3.6088 -1.3960 -3.0052 38 1 1.5131 -2.8701 -2.6749 39 1 -0.1776 -2.7854 -0.0723 40 1 -0.7404 -2.5099 -1.7777 41 1 -0.3078 -4.8423 -2.3933 42 1 -0.5413 -5.1470 -0.6175 43 1 2.0679 -5.1117 -1.8549 44 1 1.8011 -4.6186 -0.1267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310488677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:43 Heat of formation + Delta-G solvation = 3.159401 kcal Electronic energy + Delta-G solvation = -22648.168845 eV Core-core repulsion = 19760.172651 eV Total energy + Delta-G solvation = -2887.996194 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.50446 -37.58651 -36.91255 -32.74754 -31.27259 -30.55413 -27.33459 -25.94066 -24.98555 -24.78498 -24.26815 -22.84725 -20.66416 -19.56847 -18.62290 -18.20302 -16.54670 -15.89199 -15.50078 -15.07398 -14.94006 -14.40278 -13.84466 -13.09397 -12.99362 -12.65684 -12.58340 -12.22967 -11.98172 -11.90269 -11.73413 -11.64816 -11.54147 -11.27927 -10.92511 -10.67925 -10.58024 -10.24150 -10.22005 -10.11443 -9.94722 -9.88831 -9.80071 -9.69396 -9.40581 -9.07905 -8.87910 -8.50546 -8.02743 -6.06331 -4.13246 3.39346 3.49947 3.72695 4.55929 4.64262 4.84165 4.95444 5.05055 5.12425 5.18051 5.26982 5.38808 5.43221 5.48358 5.55310 5.62066 5.73074 5.83874 5.94553 5.99225 6.03498 6.08526 6.12309 6.16798 6.22897 6.30346 6.34887 6.37359 6.43724 6.48554 6.53807 6.58567 6.66515 6.70019 6.71930 6.78919 6.80734 6.93060 6.98186 7.26507 7.37960 7.75545 8.48454 8.52651 8.96222 9.59409 11.04339 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.017603 B = 0.010318 C = 0.008425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.226977 B = 2713.153877 C = 3322.720711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.199 3.801 3 C -0.509 4.509 4 H 0.077 0.923 5 C 0.085 3.915 6 N -0.894 5.894 7 Si 0.878 3.122 8 H -0.291 1.291 9 H -0.306 1.306 10 H -0.221 1.221 11 C -0.129 4.129 12 C -0.153 4.153 13 C 0.123 3.877 14 C -0.107 4.107 15 C -0.130 4.130 16 C -0.145 4.145 17 C -0.126 4.126 18 C -0.103 4.103 19 C -0.143 4.143 20 C -0.144 4.144 21 C -0.133 4.133 22 O -0.353 6.353 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.264 0.736 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -15.129 0.148 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.162 3.838 3 C -0.546 4.546 4 H 0.095 0.905 5 C -0.119 4.119 6 N -0.532 5.532 7 Si 0.708 3.292 8 H -0.219 1.219 9 H -0.234 1.234 10 H -0.144 1.144 11 C -0.166 4.166 12 C -0.190 4.190 13 C 0.083 3.917 14 C -0.125 4.125 15 C -0.167 4.167 16 C -0.183 4.183 17 C -0.163 4.163 18 C -0.122 4.122 19 C -0.179 4.179 20 C -0.181 4.181 21 C -0.171 4.171 22 O -0.273 6.273 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.353 -14.886 -0.137 14.891 hybrid contribution -0.615 -0.173 -0.599 0.876 sum -0.968 -15.059 -0.736 15.108 Atomic orbital electron populations 1.22593 0.98965 0.99699 1.01013 1.20216 0.89589 0.92042 0.81999 1.20879 1.32591 0.91531 1.09613 0.90509 1.25021 0.95116 0.94256 0.97530 1.69921 1.44633 1.05650 1.32970 0.87060 0.79225 0.82152 0.80746 1.21872 1.23427 1.14440 1.23118 1.01627 0.92980 0.98902 1.23302 1.01264 0.98425 0.96009 1.21572 0.92149 0.85807 0.92172 1.22708 0.94597 0.98134 0.97067 1.22982 0.96612 1.01435 0.95673 1.22779 0.96367 1.00320 0.98829 1.22778 0.97169 1.00276 0.96116 1.22725 0.95115 0.93983 1.00344 1.23212 0.97420 0.95230 1.02085 1.22827 0.96853 0.97324 1.01141 1.22903 0.96004 0.96770 1.01394 1.88818 1.84389 1.17765 1.36364 0.92808 0.93630 0.93819 0.92699 0.91094 0.92069 0.91952 0.90858 0.90303 0.86924 0.93210 0.91580 0.91948 0.93083 0.89395 0.89502 0.88970 0.91907 0.90777 0.92057 0.92119 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.54 8.30 37.15 0.31 -3.23 16 2 C 0.20 4.47 0.54 -90.74 -0.05 4.42 16 3 C -0.51 -13.94 8.75 -34.44 -0.30 -14.24 16 4 H 0.08 2.28 8.01 -52.49 -0.42 1.86 16 5 C 0.08 2.43 5.45 -17.82 -0.10 2.33 16 6 N -0.89 -27.33 13.96 55.43 0.77 -26.55 16 7 Si 0.88 22.41 24.00 -169.99 -4.08 18.33 16 8 H -0.29 -7.33 6.83 56.52 0.39 -6.95 16 9 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 10 H -0.22 -5.43 5.43 56.52 0.31 -5.12 16 11 C -0.13 -2.46 5.66 -24.48 -0.14 -2.60 16 12 C -0.15 -2.47 4.30 -24.79 -0.11 -2.57 16 13 C 0.12 2.13 0.42 -89.90 -0.04 2.10 16 14 C -0.11 -1.72 2.61 -89.81 -0.23 -1.95 16 15 C -0.13 -2.28 6.55 -25.92 -0.17 -2.45 16 16 C -0.15 -2.28 8.08 -25.92 -0.21 -2.49 16 17 C -0.13 -2.03 7.02 -25.92 -0.18 -2.21 16 18 C -0.10 -1.59 3.10 -89.81 -0.28 -1.87 16 19 C -0.14 -2.09 5.68 -25.92 -0.15 -2.24 16 20 C -0.14 -1.73 8.08 -25.92 -0.21 -1.94 16 21 C -0.13 -1.67 7.02 -25.92 -0.18 -1.85 16 22 O -0.35 -7.69 5.39 -35.23 -0.19 -7.88 16 23 H 0.05 1.10 8.12 -51.93 -0.42 0.67 16 24 H 0.05 1.06 3.21 -51.93 -0.17 0.89 16 25 H 0.04 0.81 4.28 -51.93 -0.22 0.59 16 26 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 27 H 0.07 1.41 7.50 -51.93 -0.39 1.02 16 28 H 0.06 1.10 8.02 -51.93 -0.42 0.69 16 29 H 0.06 0.91 7.82 -51.93 -0.41 0.50 16 30 H 0.07 1.11 4.90 -51.93 -0.25 0.85 16 31 H 0.08 1.14 8.03 -51.93 -0.42 0.72 16 32 H 0.11 2.44 6.83 -51.93 -0.35 2.09 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 1.64 7.66 -51.93 -0.40 1.24 16 38 H 0.09 1.44 7.95 -51.93 -0.41 1.02 16 39 H 0.09 1.36 4.03 -51.93 -0.21 1.15 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.08 0.97 7.12 -51.93 -0.37 0.60 16 LS Contribution 311.20 15.07 4.69 4.69 Total: -1.00 -29.13 311.20 -8.33 -37.45 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.49 Total: 4.76 kcal Atomic # 6 Polarization: -28.76 SS G_CDS: -2.03 Total: -30.79 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.77 Total: -26.55 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.19 Total: -7.88 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.08 Total: 18.33 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.13 -8.33 -37.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310488677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.612 kcal (2) G-P(sol) polarization free energy of solvation -29.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds