Wall clock time and date at job start Mon Mar 30 2020 07:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50706 * 110.27086 * 2 1 4 4 H 1.08000 * 119.99694 * 240.63237 * 3 2 1 5 5 C 1.37872 * 120.00445 * 60.64011 * 3 2 1 6 6 N 1.31521 * 120.00061 * 359.97438 * 5 3 2 7 7 Si 1.86794 * 120.00313 * 179.97438 * 5 3 2 8 8 H 1.48504 * 109.47131 * 89.99408 * 7 5 3 9 9 H 1.48503 * 109.47429 * 209.99716 * 7 5 3 10 10 H 1.48505 * 109.47140 * 329.99930 * 7 5 3 11 11 C 1.54939 * 110.39427 * 237.85381 * 2 1 3 12 12 C 1.55303 * 100.94147 * 204.59815 * 11 2 1 13 13 C 1.54383 * 102.25471 * 34.12807 * 12 11 2 14 14 C 1.52998 * 109.83312 * 219.12831 * 13 12 11 15 15 C 1.53784 * 113.61205 * 58.83850 * 14 13 12 16 16 C 1.53774 * 87.07924 * 220.01594 * 15 14 13 17 17 C 1.53777 * 113.61591 * 321.34154 * 14 13 12 18 18 C 1.53008 * 109.90192 * 98.19865 * 13 12 11 19 19 C 1.53771 * 113.61560 * 283.69924 * 18 13 12 20 20 C 1.53781 * 87.08265 * 220.02155 * 19 18 13 21 21 C 1.53779 * 113.60970 * 186.20134 * 18 13 12 22 22 O 1.43236 * 107.58741 * 338.64946 * 13 12 11 23 23 H 1.09004 * 109.47428 * 299.36691 * 1 2 3 24 24 H 1.09006 * 109.47055 * 59.36547 * 1 2 3 25 25 H 1.08997 * 109.47324 * 179.36511 * 1 2 3 26 26 H 0.96995 * 120.00243 * 180.02562 * 6 5 3 27 27 H 1.09008 * 111.12514 * 322.51244 * 11 2 1 28 28 H 1.08997 * 111.12676 * 86.67945 * 11 2 1 29 29 H 1.08998 * 110.84902 * 275.94172 * 12 11 2 30 30 H 1.09001 * 110.85225 * 152.31837 * 12 11 2 31 31 H 1.09004 * 112.90475 * 190.08279 * 14 13 12 32 32 H 1.09001 * 113.61531 * 105.46659 * 15 14 13 33 33 H 1.09002 * 113.61319 * 334.56869 * 15 14 13 34 34 H 1.09005 * 113.61299 * 139.97812 * 16 15 14 35 35 H 1.09002 * 113.61832 * 270.87774 * 16 15 14 36 36 H 1.08997 * 113.61418 * 25.43127 * 17 14 13 37 37 H 1.09001 * 113.61057 * 254.52181 * 17 14 13 38 38 H 1.09004 * 112.84757 * 55.01311 * 18 13 12 39 39 H 1.08999 * 113.61641 * 334.57200 * 19 18 13 40 40 H 1.08998 * 113.61371 * 105.47388 * 19 18 13 41 41 H 1.09006 * 113.61305 * 270.88563 * 20 19 18 42 42 H 1.08999 * 113.61417 * 139.98424 * 20 19 18 43 43 H 1.09001 * 113.61765 * 254.52955 * 21 18 13 44 44 H 1.09000 * 113.62189 * 25.43966 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0521 1.4137 0.0000 4 1 2.6695 1.7613 -0.8151 5 6 1.7419 2.2633 1.0406 6 7 0.9898 1.8401 2.0331 7 14 2.3896 4.0153 1.0409 8 1 1.4170 4.9028 0.3541 9 1 2.5756 4.4742 2.4410 10 1 3.6914 4.0619 0.3277 11 6 2.0699 -0.7727 -1.2296 12 6 3.4722 -1.2001 -0.7168 13 6 3.2125 -1.4393 0.7861 14 6 4.3990 -0.9279 1.6057 15 6 4.6875 0.5691 1.4039 16 6 6.1810 0.2033 1.4233 17 6 5.7632 -1.1988 0.9498 18 6 3.0062 -2.9326 1.0479 19 6 1.6219 -3.4475 0.6199 20 6 1.6277 -4.2955 1.9028 21 6 2.5915 -3.2529 2.4936 22 8 2.0285 -0.7156 1.1414 23 1 -0.3634 0.5040 0.8956 24 1 -0.3633 0.5237 -0.8843 25 1 -0.3634 -1.0276 -0.0114 26 1 0.7712 2.4379 2.7650 27 1 1.4506 -1.6422 -1.4502 28 1 2.1516 -0.1202 -2.0988 29 1 4.1987 -0.4007 -0.8624 30 1 3.8006 -2.1179 -1.2045 31 1 4.3511 -1.2260 2.6531 32 1 4.3792 1.1904 2.2447 33 1 4.3447 0.9542 0.4436 34 1 6.7745 0.7522 0.6921 35 1 6.6205 0.2145 2.4208 36 1 5.7145 -1.2970 -0.1347 37 1 6.3233 -2.0047 1.4241 38 1 3.8324 -3.5440 0.6850 39 1 0.8526 -2.6754 0.6103 40 1 1.6400 -4.0397 -0.2950 41 1 2.0760 -5.2806 1.7730 42 1 0.6617 -4.3320 2.4064 43 1 3.3923 -3.6881 3.0914 44 1 2.0872 -2.4277 2.9964 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310488679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:45 Heat of formation + Delta-G solvation = -9.704492 kcal Electronic energy + Delta-G solvation = -22702.740131 eV Core-core repulsion = 19814.186117 eV Total energy + Delta-G solvation = -2888.554014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.09929 -37.35056 -36.50696 -32.68288 -30.84947 -30.09184 -26.83828 -25.48959 -24.89148 -24.55855 -24.15219 -22.42062 -20.24471 -19.55709 -18.45390 -17.86285 -16.62405 -15.40933 -14.95305 -14.89131 -14.54639 -14.34028 -13.48039 -12.89568 -12.80143 -12.49162 -12.12976 -11.77535 -11.57947 -11.55694 -11.44392 -11.19951 -11.13793 -10.79737 -10.78829 -10.62770 -10.45483 -10.31439 -10.26666 -10.05468 -9.94134 -9.77164 -9.69638 -9.44295 -9.07552 -8.91321 -8.90239 -8.38397 -7.65268 -5.88111 -4.01186 3.31121 3.39442 3.41697 4.46311 4.94429 5.16381 5.26769 5.30340 5.36300 5.37411 5.44633 5.55043 5.64587 5.73604 5.81092 5.92707 5.99258 6.10529 6.15649 6.22348 6.33574 6.36029 6.37611 6.39917 6.45744 6.52690 6.56049 6.63584 6.73291 6.82670 6.88130 6.91063 6.94895 7.00984 7.08737 7.14361 7.19317 7.23846 7.48604 7.55791 7.84383 8.11392 8.43572 8.80180 9.13254 9.67967 11.13601 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.018507 B = 0.009985 C = 0.007940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.574806 B = 2803.667325 C = 3525.567827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.235 3.765 3 C -0.530 4.530 4 H 0.053 0.947 5 C 0.090 3.910 6 N -0.857 5.857 7 Si 0.872 3.128 8 H -0.283 1.283 9 H -0.287 1.287 10 H -0.273 1.273 11 C -0.147 4.147 12 C -0.134 4.134 13 C 0.138 3.862 14 C -0.098 4.098 15 C -0.114 4.114 16 C -0.155 4.155 17 C -0.138 4.138 18 C -0.111 4.111 19 C -0.129 4.129 20 C -0.145 4.145 21 C -0.126 4.126 22 O -0.339 6.339 23 H 0.086 0.914 24 H 0.036 0.964 25 H 0.013 0.987 26 H 0.257 0.743 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.050 0.950 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -7.976 -1.877 9.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.198 3.802 3 C -0.568 4.568 4 H 0.071 0.929 5 C -0.115 4.115 6 N -0.493 5.493 7 Si 0.700 3.300 8 H -0.209 1.209 9 H -0.213 1.213 10 H -0.198 1.198 11 C -0.185 4.185 12 C -0.172 4.172 13 C 0.097 3.903 14 C -0.116 4.116 15 C -0.151 4.151 16 C -0.192 4.192 17 C -0.176 4.176 18 C -0.129 4.129 19 C -0.166 4.166 20 C -0.183 4.183 21 C -0.163 4.163 22 O -0.258 6.258 23 H 0.105 0.895 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.123 0.877 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.702 -7.921 -1.491 9.331 hybrid contribution 0.580 0.996 -0.106 1.157 sum 5.282 -6.926 -1.598 8.855 Atomic orbital electron populations 1.21748 0.96943 0.97494 1.02525 1.19769 0.90745 0.89821 0.79913 1.21176 1.33042 0.95733 1.06808 0.92904 1.24842 0.94291 0.97100 0.95312 1.69957 1.35479 1.34725 1.09184 0.86948 0.79585 0.86235 0.77264 1.20908 1.21300 1.19801 1.23325 0.95583 0.99084 1.00532 1.23023 0.98366 0.99858 0.95916 1.21345 0.87502 0.89372 0.92107 1.22599 0.92764 0.97404 0.98851 1.22948 0.91909 0.95974 1.04277 1.22940 0.98782 0.97347 1.00140 1.23012 0.97446 0.96470 1.00654 1.22811 0.96729 0.96554 0.96818 1.22897 0.98792 0.99111 0.95837 1.22795 0.99683 0.97261 0.98525 1.22801 0.98361 0.98843 0.96318 1.88564 1.38346 1.62949 1.35991 0.89518 0.94482 0.96810 0.93322 0.93205 0.92086 0.90811 0.93072 0.90542 0.92417 0.87664 0.92597 0.91490 0.90136 0.92906 0.90417 0.88547 0.93188 0.91490 0.92184 0.93073 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.72 37.16 0.32 -2.72 16 2 C 0.23 5.48 0.59 -90.75 -0.05 5.43 16 3 C -0.53 -13.48 5.39 -34.44 -0.19 -13.67 16 4 H 0.05 1.36 7.64 -52.49 -0.40 0.96 16 5 C 0.09 2.36 5.28 -17.82 -0.09 2.26 16 6 N -0.86 -23.58 11.07 55.43 0.61 -22.97 16 7 Si 0.87 20.70 29.54 -169.99 -5.02 15.67 16 8 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 9 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 C -0.15 -2.97 5.67 -24.49 -0.14 -3.11 16 12 C -0.13 -2.49 4.19 -24.79 -0.10 -2.59 16 13 C 0.14 2.65 0.40 -89.89 -0.04 2.62 16 14 C -0.10 -1.83 3.22 -89.81 -0.29 -2.12 16 15 C -0.11 -2.31 6.44 -25.92 -0.17 -2.47 16 16 C -0.15 -2.54 8.08 -25.92 -0.21 -2.75 16 17 C -0.14 -2.19 7.27 -25.92 -0.19 -2.38 16 18 C -0.11 -1.87 2.89 -89.81 -0.26 -2.13 16 19 C -0.13 -2.15 6.52 -25.92 -0.17 -2.32 16 20 C -0.15 -2.17 8.08 -25.92 -0.21 -2.38 16 21 C -0.13 -2.09 6.80 -25.92 -0.18 -2.26 16 22 O -0.34 -7.89 7.51 -35.23 -0.26 -8.16 16 23 H 0.09 2.27 6.21 -51.93 -0.32 1.94 16 24 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 25 H 0.01 0.28 7.16 -51.93 -0.37 -0.09 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.05 0.95 7.44 -51.92 -0.39 0.56 16 28 H 0.06 1.22 7.98 -51.93 -0.41 0.80 16 29 H 0.07 1.41 5.23 -51.93 -0.27 1.14 16 30 H 0.05 0.84 7.82 -51.93 -0.41 0.44 16 31 H 0.08 1.48 7.57 -51.93 -0.39 1.08 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.11 2.33 4.47 -51.93 -0.23 2.10 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.24 6.03 -51.93 -0.31 0.93 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.10 1.86 5.97 -51.93 -0.31 1.55 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.78 7.62 -51.93 -0.40 1.39 16 LS Contribution 319.87 15.07 4.82 4.82 Total: -1.00 -26.29 319.87 -9.39 -35.68 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.58 Total: 5.56 kcal Atomic # 6 Polarization: -28.65 SS G_CDS: -1.96 Total: -30.61 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.61 Total: -22.97 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.26 Total: -8.16 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.29 -9.39 -35.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310488679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.972 kcal (2) G-P(sol) polarization free energy of solvation -26.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds