Wall clock time and date at job start Mon Mar 30 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46742 * 2 1 4 4 C 1.53002 * 109.47135 * 119.99903 * 2 1 3 5 5 C 1.50699 * 109.47579 * 295.00157 * 4 2 1 6 6 H 1.07998 * 119.99571 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99742 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00231 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47144 * 90.00158 * 9 7 5 11 11 H 1.48500 * 109.47390 * 209.99785 * 9 7 5 12 12 H 1.48500 * 109.47160 * 330.00203 * 9 7 5 13 13 C 1.50693 * 109.47079 * 240.00261 * 2 1 3 14 14 N 1.31134 * 126.55476 * 120.24964 * 13 2 1 15 15 C 1.34496 * 105.61585 * 180.12119 * 14 13 2 16 16 C 1.50704 * 126.28464 * 179.90461 * 15 14 13 17 17 C 1.52994 * 110.05456 * 301.12884 * 16 15 14 18 18 C 1.53869 * 110.02997 * 179.71209 * 16 15 14 19 19 C 1.54266 * 106.60029 * 240.71470 * 18 16 15 20 20 C 1.54887 * 104.19388 * 336.39158 * 19 18 16 21 21 C 1.54266 * 110.03142 * 62.54463 * 16 15 14 22 22 N 1.29941 * 107.42579 * 359.64206 * 15 14 13 23 23 O 1.21299 * 110.25365 * 0.22449 * 22 15 14 24 24 H 1.08998 * 109.46742 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47205 * 299.99383 * 1 2 3 26 26 H 1.08998 * 109.47006 * 59.99710 * 1 2 3 27 27 H 1.09006 * 109.46958 * 55.00325 * 4 2 1 28 28 H 1.08997 * 109.46846 * 175.00109 * 4 2 1 29 29 H 0.97000 * 119.99386 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47387 * 298.58713 * 17 16 15 31 31 H 1.09008 * 109.46956 * 58.58721 * 17 16 15 32 32 H 1.08996 * 109.47117 * 178.58245 * 17 16 15 33 33 H 1.09000 * 110.03397 * 121.43038 * 18 16 15 34 34 H 1.09001 * 110.03290 * 0.02562 * 18 16 15 35 35 H 1.09002 * 110.48365 * 95.06944 * 19 18 16 36 36 H 1.09006 * 110.48699 * 217.71256 * 19 18 16 37 37 H 1.09004 * 110.75298 * 156.25465 * 20 19 18 38 38 H 1.08994 * 110.75450 * 279.62737 * 20 19 18 39 39 H 1.09004 * 110.48347 * 24.22170 * 21 16 15 40 40 H 1.08991 * 110.60358 * 261.62464 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0570 2.4767 6 1 1.0800 0.9740 2.3758 7 6 1.9924 -0.4023 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9615 -1.9896 3.9029 10 1 4.4153 -1.6873 3.8788 11 1 2.6132 -2.6433 5.1900 12 1 2.6267 -2.9002 2.7786 13 6 2.0323 -0.7103 -1.2304 14 7 2.7930 -0.2020 -2.1699 15 6 2.9812 -1.1932 -3.0593 16 6 3.7885 -1.1107 -4.3292 17 6 3.2297 -0.0122 -5.2356 18 6 3.7591 -2.4638 -5.0612 19 6 5.2208 -2.9492 -5.1489 20 6 6.0592 -1.6517 -5.0375 21 6 5.2669 -0.8210 -3.9975 22 7 2.3437 -2.2367 -2.6196 23 8 1.7920 -1.9804 -1.5702 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6054 -1.7199 1.2951 28 1 3.1263 -0.7994 1.2056 29 1 1.8916 -0.0462 5.6800 30 1 2.2009 -0.2515 -5.5049 31 1 3.2547 0.9416 -4.7084 32 1 3.8353 0.0562 -6.1393 33 1 3.3468 -2.3379 -6.0623 34 1 3.1606 -3.1800 -4.4982 35 1 5.4491 -3.6231 -4.3232 36 1 5.4030 -3.4402 -6.1049 37 1 7.0630 -1.8705 -4.6732 38 1 6.0991 -1.1341 -5.9958 39 1 5.5028 -1.1513 -2.9859 40 1 5.4847 0.2408 -4.1117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312948965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:29 Heat of formation + Delta-G solvation = 35.762359 kcal Electronic energy + Delta-G solvation = -20260.442201 eV Core-core repulsion = 17270.319434 eV Total energy + Delta-G solvation = -2990.122767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -45.19349 -39.08087 -36.00219 -34.99367 -32.58656 -31.54978 -30.61194 -28.89989 -27.73063 -25.81825 -24.56706 -23.53608 -22.46251 -20.78223 -20.43177 -18.64412 -17.61297 -17.23036 -16.81341 -15.66043 -15.37462 -14.71340 -14.18303 -13.92417 -13.80314 -13.54064 -12.98261 -12.84145 -12.68523 -12.24564 -12.20233 -11.61252 -11.49250 -11.32233 -11.27896 -11.17209 -11.11030 -11.09475 -10.92898 -10.78385 -10.72884 -10.49465 -10.27535 -10.14518 -9.87204 -9.36419 -9.29316 -8.62134 -6.12859 -4.12769 1.55270 2.57780 3.27107 3.29017 3.35268 3.39222 3.75166 4.09926 4.38651 4.43922 4.62630 4.70651 5.05718 5.16243 5.20487 5.24479 5.30052 5.39884 5.47442 5.61387 5.63688 5.67022 5.72224 5.74635 5.77137 5.84195 5.98536 5.98965 6.08835 6.14783 6.16385 6.26504 6.31438 6.48065 6.51963 6.80872 6.99455 7.16837 7.62476 8.39493 8.55448 8.89146 9.48177 10.99574 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.004712 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.626229 B = 5940.636017 C = 6366.261461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.009 3.991 3 H 0.111 0.889 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.080 0.920 7 C 0.073 3.927 8 N -0.897 5.897 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.264 1.264 13 C 0.212 3.788 14 N -0.495 5.495 15 C 0.176 3.824 16 C 0.029 3.971 17 C -0.133 4.133 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.123 4.123 21 C -0.108 4.108 22 N -0.398 5.398 23 O 0.070 5.930 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.042 0.958 27 H 0.028 0.972 28 H 0.017 0.983 29 H 0.265 0.735 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.577 -3.334 -19.650 20.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.011 4.011 3 H 0.129 0.871 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.700 3.300 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.007 4.007 14 N -0.227 5.227 15 C -0.098 4.098 16 C 0.028 3.972 17 C -0.191 4.191 18 C -0.159 4.159 19 C -0.161 4.161 20 C -0.161 4.161 21 C -0.146 4.146 22 N -0.108 5.108 23 O 0.015 5.985 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.061 0.939 27 H 0.046 0.954 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.792 -3.791 -20.060 20.970 hybrid contribution 0.466 -0.806 0.502 1.058 sum 5.258 -4.597 -19.559 20.768 Atomic orbital electron populations 1.21793 0.92631 1.02568 1.02433 1.20104 0.96824 0.98815 0.85381 0.87117 1.19716 0.96295 0.96723 0.91850 1.20920 1.36520 1.09852 0.88531 0.90194 1.24928 0.95337 0.96807 0.95820 1.69891 1.46464 1.39056 0.98123 0.86882 0.80774 0.84475 0.77876 1.20234 1.21132 1.18874 1.29632 0.91666 0.81845 0.97598 1.71882 1.17905 1.29645 1.03314 1.25618 0.99461 0.85528 0.99145 1.19531 0.93298 0.97225 0.87183 1.21863 1.00668 0.97925 0.98644 1.22324 0.97832 0.95338 1.00383 1.22352 0.94438 0.97536 1.01752 1.22508 0.98586 0.95942 0.99058 1.22425 0.91676 1.00902 0.99601 1.74504 1.13741 1.24004 0.98542 1.85270 1.54391 1.30066 1.28759 0.92403 0.89162 0.93858 0.95377 0.96505 0.92528 0.92604 0.91341 0.91404 0.90963 0.90134 0.91580 0.91417 0.91268 0.91185 0.91366 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.99 37.16 0.33 -1.98 16 2 C 0.01 0.17 2.81 -91.77 -0.26 -0.08 16 3 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 4 C -0.01 -0.17 3.50 -27.88 -0.10 -0.27 16 5 C -0.52 -13.80 8.96 -34.44 -0.31 -14.11 16 6 H 0.08 2.22 7.30 -52.49 -0.38 1.84 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 8 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 9 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 13 C 0.21 3.97 7.02 -13.05 -0.09 3.88 16 14 N -0.49 -9.02 11.55 -9.87 -0.11 -9.13 16 15 C 0.18 2.93 6.32 -156.37 -0.99 1.94 16 16 C 0.03 0.37 0.91 -154.55 -0.14 0.23 16 17 C -0.13 -1.45 8.13 37.15 0.30 -1.15 16 18 C -0.12 -1.36 6.09 -25.62 -0.16 -1.52 16 19 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 20 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 21 C -0.11 -1.26 5.89 -25.07 -0.15 -1.40 16 22 N -0.40 -7.15 10.68 30.90 0.33 -6.82 16 23 O 0.07 1.33 11.31 18.08 0.20 1.53 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.09 1.62 6.95 -51.93 -0.36 1.26 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 28 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.69 7.67 -51.93 -0.40 0.29 16 34 H 0.08 1.06 6.60 -51.93 -0.34 0.72 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 40 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -29.34 322.25 -7.07 -36.41 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: -6.46 Total: -2.43 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.99 Total: -15.16 kcal Atomic # 7 Polarization: -42.71 SS G_CDS: 0.99 Total: -41.72 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.20 Total: 1.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.34 -7.07 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312948965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.176 kcal (2) G-P(sol) polarization free energy of solvation -29.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds