Wall clock time and date at job start Mon Mar 30 2020 07:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46742 * 2 1 4 4 C 1.53002 * 109.47135 * 119.99903 * 2 1 3 5 5 C 1.50699 * 109.47579 * 295.00157 * 4 2 1 6 6 H 1.07998 * 119.99571 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00132 * 179.97438 * 5 4 2 8 8 N 1.31520 * 119.99742 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00231 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.47144 * 90.00158 * 9 7 5 11 11 H 1.48500 * 109.47390 * 209.99785 * 9 7 5 12 12 H 1.48500 * 109.47160 * 330.00203 * 9 7 5 13 13 C 1.50693 * 109.47079 * 240.00261 * 2 1 3 14 14 N 1.31134 * 126.55476 * 120.24964 * 13 2 1 15 15 C 1.34496 * 105.61585 * 180.12119 * 14 13 2 16 16 C 1.50704 * 126.28464 * 179.90461 * 15 14 13 17 17 C 1.52994 * 110.05456 * 301.12884 * 16 15 14 18 18 C 1.53869 * 110.02997 * 179.71209 * 16 15 14 19 19 C 1.54266 * 106.60029 * 240.71470 * 18 16 15 20 20 C 1.54887 * 104.19388 * 336.39158 * 19 18 16 21 21 C 1.54266 * 110.03142 * 62.54463 * 16 15 14 22 22 N 1.29941 * 107.42579 * 359.64206 * 15 14 13 23 23 O 1.21299 * 110.25365 * 0.22449 * 22 15 14 24 24 H 1.08998 * 109.46742 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47205 * 299.99383 * 1 2 3 26 26 H 1.08998 * 109.47006 * 59.99710 * 1 2 3 27 27 H 1.09006 * 109.46958 * 55.00325 * 4 2 1 28 28 H 1.08997 * 109.46846 * 175.00109 * 4 2 1 29 29 H 0.97000 * 119.99386 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47387 * 298.58713 * 17 16 15 31 31 H 1.09008 * 109.46956 * 58.58721 * 17 16 15 32 32 H 1.08996 * 109.47117 * 178.58245 * 17 16 15 33 33 H 1.09000 * 110.03397 * 121.43038 * 18 16 15 34 34 H 1.09001 * 110.03290 * 0.02562 * 18 16 15 35 35 H 1.09002 * 110.48365 * 95.06944 * 19 18 16 36 36 H 1.09006 * 110.48699 * 217.71256 * 19 18 16 37 37 H 1.09004 * 110.75298 * 156.25465 * 20 19 18 38 38 H 1.08994 * 110.75450 * 279.62737 * 20 19 18 39 39 H 1.09004 * 110.48347 * 24.22170 * 21 16 15 40 40 H 1.08991 * 110.60358 * 261.62464 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 0.0570 2.4767 6 1 1.0800 0.9740 2.3758 7 6 1.9924 -0.4023 3.7283 8 7 1.6449 0.2772 4.7994 9 14 2.9615 -1.9896 3.9029 10 1 4.4153 -1.6873 3.8788 11 1 2.6132 -2.6433 5.1900 12 1 2.6267 -2.9002 2.7786 13 6 2.0323 -0.7103 -1.2304 14 7 2.7930 -0.2020 -2.1699 15 6 2.9812 -1.1932 -3.0593 16 6 3.7885 -1.1107 -4.3292 17 6 3.2297 -0.0122 -5.2356 18 6 3.7591 -2.4638 -5.0612 19 6 5.2208 -2.9492 -5.1489 20 6 6.0592 -1.6517 -5.0375 21 6 5.2669 -0.8210 -3.9975 22 7 2.3437 -2.2367 -2.6196 23 8 1.7920 -1.9804 -1.5702 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.6054 -1.7199 1.2951 28 1 3.1263 -0.7994 1.2056 29 1 1.8916 -0.0462 5.6800 30 1 2.2009 -0.2515 -5.5049 31 1 3.2547 0.9416 -4.7084 32 1 3.8353 0.0562 -6.1393 33 1 3.3468 -2.3379 -6.0623 34 1 3.1606 -3.1800 -4.4982 35 1 5.4491 -3.6231 -4.3232 36 1 5.4030 -3.4402 -6.1049 37 1 7.0630 -1.8705 -4.6732 38 1 6.0991 -1.1341 -5.9958 39 1 5.5028 -1.1513 -2.9859 40 1 5.4847 0.2408 -4.1117 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312948965.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:29 Heat of formation + Delta-G solvation = 18.482029 kcal Electronic energy + Delta-G solvation = -20261.191532 eV Core-core repulsion = 17270.319434 eV Total energy + Delta-G solvation = -2990.872098 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -46.59536 -40.00439 -37.61270 -36.37193 -34.52467 -32.83407 -31.77562 -29.82260 -29.49282 -26.77907 -26.14655 -24.76868 -24.11224 -21.98696 -21.49156 -19.84842 -19.15387 -19.01172 -18.25381 -16.69962 -16.52431 -16.27116 -15.91482 -15.36870 -14.82559 -14.68924 -14.54069 -14.04889 -13.85726 -13.70652 -13.39397 -13.21405 -12.98424 -12.68058 -12.58405 -12.33202 -12.23648 -12.07562 -12.03626 -11.99168 -11.96912 -11.77855 -11.66854 -11.60831 -11.43586 -11.34601 -10.81331 -10.75223 -8.28290 -6.31462 0.11230 1.21392 1.33975 1.37377 1.46684 1.82694 2.34803 2.52940 2.93891 3.06995 3.52050 3.64250 3.77283 4.04006 4.12021 4.18122 4.28465 4.36439 4.41346 4.46748 4.49958 4.67081 4.71279 4.82007 4.85676 4.90109 4.93452 4.95999 5.01657 5.02419 5.11281 5.14117 5.17266 5.27783 5.30224 5.34951 5.41068 5.43961 5.59294 6.25451 6.74836 7.13934 7.32351 8.87087 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.027837 B = 0.004712 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.626229 B = 5940.636017 C = 6366.261461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.017 3.983 3 H 0.110 0.890 4 C -0.003 4.003 5 C -0.517 4.517 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.942 5.942 9 Si 0.930 3.070 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.253 1.253 13 C 0.208 3.792 14 N -0.503 5.503 15 C 0.180 3.820 16 C 0.021 3.979 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.121 4.121 20 C -0.114 4.114 21 C -0.109 4.109 22 N -0.409 5.409 23 O 0.057 5.943 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.012 0.988 29 H 0.267 0.733 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.040 0.960 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 -4.107 -22.279 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.004 4.004 3 H 0.128 0.872 4 C -0.042 4.042 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.755 3.245 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.177 1.177 13 C -0.012 4.012 14 N -0.236 5.236 15 C -0.093 4.093 16 C 0.019 3.981 17 C -0.186 4.186 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.151 4.151 21 C -0.148 4.148 22 N -0.121 5.121 23 O 0.005 5.995 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.857 -4.571 -22.690 23.875 hybrid contribution 0.119 -0.504 1.266 1.368 sum 5.977 -5.075 -21.424 22.813 Atomic orbital electron populations 1.21732 0.91067 1.03046 1.02962 1.19895 0.98105 0.98243 0.84143 0.87156 1.19590 0.95951 0.96551 0.92065 1.21181 1.35195 1.09175 0.89953 0.92495 1.25712 0.96594 1.00008 0.95675 1.70012 1.48403 1.41053 0.98727 0.85962 0.79427 0.80921 0.78240 1.19785 1.20681 1.17674 1.29432 0.92063 0.82023 0.97710 1.71897 1.17743 1.30318 1.03659 1.26427 0.98591 0.84490 0.99801 1.19921 0.93309 0.98936 0.85890 1.21859 1.01090 0.96424 0.99234 1.22343 0.98773 0.93806 1.00829 1.22362 0.93316 0.97727 1.02485 1.22509 0.98305 0.95111 0.99206 1.22443 0.91451 1.01835 0.99053 1.74526 1.14542 1.24557 0.98509 1.85256 1.54915 1.30038 1.29332 0.91956 0.90534 0.91371 0.95258 0.96989 0.92416 0.92827 0.92447 0.88283 0.88791 0.92499 0.93048 0.89024 0.90483 0.88800 0.94115 0.89735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.34 8.99 71.98 0.65 -3.70 16 2 C 0.02 0.62 2.81 -11.54 -0.03 0.59 16 3 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 4 C 0.00 -0.15 3.50 29.85 0.10 -0.04 16 5 C -0.52 -27.79 8.96 25.60 0.23 -27.56 16 6 H 0.06 3.26 7.30 -2.91 -0.02 3.23 16 7 C 0.02 1.02 5.47 84.65 0.46 1.48 16 8 N -0.94 -56.77 13.96 21.44 0.30 -56.47 16 9 Si 0.93 43.59 27.47 68.60 1.88 45.48 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 13 C 0.21 7.66 7.02 88.38 0.62 8.28 16 14 N -0.50 -18.00 11.55 -303.19 -3.50 -21.50 16 15 C 0.18 5.85 6.32 138.46 0.88 6.72 16 16 C 0.02 0.50 0.91 -52.21 -0.05 0.45 16 17 C -0.13 -2.45 8.13 71.98 0.59 -1.86 16 18 C -0.12 -2.42 6.09 31.32 0.19 -2.23 16 19 C -0.12 -2.00 6.83 31.67 0.22 -1.79 16 20 C -0.11 -1.70 6.91 31.89 0.22 -1.48 16 21 C -0.11 -2.35 5.89 31.67 0.19 -2.16 16 22 N -0.41 -14.49 10.68 -60.31 -0.64 -15.14 16 23 O 0.06 2.12 11.31 74.76 0.85 2.96 16 24 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 2.77 6.95 -2.38 -0.02 2.75 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.03 1.32 7.20 -2.38 -0.02 1.30 16 28 H 0.01 0.55 7.57 -2.39 -0.02 0.53 16 29 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 33 H 0.09 1.48 7.67 -2.39 -0.02 1.46 16 34 H 0.06 1.44 6.60 -2.39 -0.02 1.42 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.04 1.08 7.85 -2.38 -0.02 1.06 16 40 H 0.08 1.66 7.85 -2.39 -0.02 1.64 16 Total: -1.00 -63.37 322.25 4.10 -59.27 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 0.96 Total: 8.69 kcal Atomic # 6 Polarization: -27.55 SS G_CDS: 4.26 Total: -23.29 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -3.85 Total: -93.11 kcal Atomic # 8 Polarization: 2.12 SS G_CDS: 0.85 Total: 2.96 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -63.37 4.10 -59.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312948965.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.751 kcal (2) G-P(sol) polarization free energy of solvation -63.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds