Wall clock time and date at job start Mon Mar 30 2020 07:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47265 * 2 1 4 4 C 1.53002 * 109.46885 * 240.00102 * 2 1 3 5 5 C 1.50697 * 109.47384 * 65.00159 * 4 2 1 6 6 H 1.08004 * 119.99631 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00261 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99971 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00057 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47174 * 60.00154 * 9 7 5 11 11 H 1.48503 * 109.47364 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47316 * 300.00010 * 9 7 5 13 13 C 1.50699 * 109.47057 * 120.00065 * 2 1 3 14 14 N 1.31133 * 126.55277 * 239.99888 * 13 2 1 15 15 C 1.34498 * 105.61434 * 180.02562 * 14 13 2 16 16 C 1.50704 * 126.28444 * 179.97438 * 15 14 13 17 17 C 1.52994 * 110.05456 * 301.41329 * 16 15 14 18 18 C 1.53869 * 110.02997 * 179.97438 * 16 15 14 19 19 C 1.54266 * 106.60029 * 240.71470 * 18 16 15 20 20 C 1.54887 * 104.19388 * 336.39158 * 19 18 16 21 21 C 1.54266 * 110.03142 * 62.82908 * 16 15 14 22 22 N 1.29944 * 107.42484 * 0.23774 * 15 14 13 23 23 O 1.21297 * 110.24953 * 359.58518 * 22 15 14 24 24 H 1.09008 * 109.47448 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47336 * 299.99664 * 1 2 3 26 26 H 1.09002 * 109.47324 * 59.99715 * 1 2 3 27 27 H 1.09008 * 109.46773 * 185.00027 * 4 2 1 28 28 H 1.09000 * 109.47095 * 304.99342 * 4 2 1 29 29 H 0.96994 * 120.00108 * 179.97438 * 8 7 5 30 30 H 1.08999 * 109.47387 * 298.58713 * 17 16 15 31 31 H 1.09008 * 109.46956 * 58.58721 * 17 16 15 32 32 H 1.08996 * 109.47117 * 178.58245 * 17 16 15 33 33 H 1.09000 * 110.03397 * 121.43038 * 18 16 15 34 34 H 1.09001 * 110.03290 * 0.02562 * 18 16 15 35 35 H 1.09002 * 110.48365 * 95.06944 * 19 18 16 36 36 H 1.09006 * 110.48699 * 217.71256 * 19 18 16 37 37 H 1.09004 * 110.75298 * 156.25465 * 20 19 18 38 38 H 1.08994 * 110.75450 * 279.62737 * 20 19 18 39 39 H 1.09004 * 110.48347 * 24.22170 * 21 16 15 40 40 H 1.08991 * 110.60358 * 261.62464 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0570 -2.4766 6 1 1.0799 0.9742 -2.3757 7 6 1.9931 -0.4017 -3.7283 8 7 2.6763 -1.5187 -3.8512 9 14 1.4984 0.5627 -5.2496 10 1 2.0895 1.9235 -5.1870 11 1 1.9934 -0.1372 -6.4622 12 1 0.0183 0.6682 -5.3092 13 6 2.0323 -0.7104 1.2304 14 7 2.7892 -0.2008 2.1722 15 6 2.9818 -1.1936 3.0588 16 6 3.7894 -1.1113 4.3285 17 6 5.2333 -0.7206 4.0075 18 6 3.7593 -2.4642 5.0609 19 6 3.1160 -2.2052 6.4389 20 6 3.3576 -0.6966 6.6933 21 6 3.1629 -0.0777 5.2872 22 7 2.3483 -2.2385 2.6166 23 8 1.7919 -1.9804 1.5701 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 3.1263 -0.7995 -1.2056 28 1 1.6054 -1.7198 -1.2951 29 1 2.9235 -1.8417 -4.7318 30 1 5.6829 -1.4823 3.3706 31 1 5.2436 0.2385 3.4894 32 1 5.8022 -0.6392 4.9336 33 1 4.7736 -2.8428 5.1876 34 1 3.1610 -3.1804 4.4977 35 1 2.0479 -2.4206 6.4077 36 1 3.6049 -2.8047 7.2069 37 1 2.6230 -0.3007 7.3946 38 1 4.3711 -0.5233 7.0549 39 1 2.1024 0.0501 5.0701 40 1 3.6839 0.8769 5.2155 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312948966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:32 Heat of formation + Delta-G solvation = 31.964102 kcal Electronic energy + Delta-G solvation = -20162.442553 eV Core-core repulsion = 17172.155082 eV Total energy + Delta-G solvation = -2990.287472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 264.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.06579 -39.02076 -35.84936 -34.87820 -32.59910 -31.43868 -30.47122 -28.84431 -27.13216 -25.73073 -24.56771 -23.43138 -22.64614 -20.80589 -20.44404 -18.57265 -17.49647 -16.93398 -16.52603 -15.58560 -15.32037 -14.58578 -14.43527 -13.87980 -13.69874 -13.33220 -12.90866 -12.63473 -12.61823 -12.11629 -11.95476 -11.47524 -11.35403 -11.25085 -11.23317 -11.12682 -11.02217 -10.98359 -10.86862 -10.69617 -10.68400 -10.52130 -10.40112 -10.12793 -9.83312 -9.26404 -9.13808 -8.44140 -6.08171 -4.12335 1.68408 2.69415 3.30155 3.35179 3.36407 3.42855 3.85179 4.17608 4.39697 4.49007 4.70960 4.77612 5.11571 5.22618 5.28049 5.30967 5.34597 5.47555 5.54030 5.68623 5.72029 5.74016 5.78566 5.83142 5.85640 5.89336 6.04799 6.08398 6.16757 6.18217 6.24396 6.35412 6.43250 6.58295 6.69292 6.83333 7.48540 7.56995 7.87031 8.23406 8.67806 8.91818 9.52071 11.03125 Molecular weight = 264.16amu Principal moments of inertia in cm(-1) A = 0.041612 B = 0.003957 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.726011 B = 7074.178146 C = 7165.347278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.105 0.895 4 C 0.029 3.971 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.217 3.783 14 N -0.499 5.499 15 C 0.175 3.825 16 C 0.030 3.970 17 C -0.134 4.134 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.106 4.106 22 N -0.398 5.398 23 O 0.072 5.928 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.084 0.916 27 H 0.021 0.979 28 H 0.029 0.971 29 H 0.263 0.737 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.924 1.232 17.928 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.123 0.877 4 C -0.008 4.008 5 C -0.560 4.560 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.530 5.530 9 Si 0.723 3.277 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.201 1.201 13 C -0.002 4.002 14 N -0.232 5.232 15 C -0.099 4.099 16 C 0.028 3.972 17 C -0.192 4.192 18 C -0.159 4.159 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.144 4.144 22 N -0.109 5.109 23 O 0.017 5.983 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.103 0.897 27 H 0.040 0.960 28 H 0.047 0.953 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.229 0.643 18.396 18.449 hybrid contribution -0.213 0.418 -1.175 1.266 sum 1.016 1.062 17.221 17.284 Atomic orbital electron populations 1.21776 0.93122 1.02495 1.01877 1.20328 0.96468 0.98833 0.86524 0.87722 1.19230 0.96814 0.96045 0.88751 1.21022 1.35941 1.08686 0.90363 0.92011 1.24999 0.94957 0.95024 0.99208 1.69955 1.38165 1.20960 1.23907 0.86603 0.78959 0.80036 0.82107 1.20136 1.21298 1.20082 1.29594 0.91516 0.81791 0.97301 1.71869 1.18217 1.29749 1.03349 1.25577 0.99740 0.85527 0.99017 1.19512 0.93697 0.96989 0.86983 1.21872 0.93075 1.02501 1.01783 1.22327 1.01906 0.95889 0.95807 1.22348 1.00873 0.96307 0.96480 1.22505 1.01678 0.95413 0.96515 1.22399 1.01040 0.97673 0.93319 1.74496 1.13742 1.23909 0.98717 1.85269 1.54117 1.30066 1.28867 0.92355 0.94134 0.89698 0.96049 0.95311 0.92729 0.92452 0.91329 0.91482 0.90947 0.90075 0.91642 0.91452 0.91365 0.91185 0.91517 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.98 37.16 0.33 -2.01 16 2 C 0.00 -0.02 2.81 -91.77 -0.26 -0.28 16 3 H 0.10 2.04 8.14 -51.93 -0.42 1.61 16 4 C 0.03 0.73 4.43 -27.88 -0.12 0.60 16 5 C -0.52 -13.73 8.41 -34.44 -0.29 -14.02 16 6 H 0.06 1.53 7.06 -52.48 -0.37 1.16 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 9 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 C 0.22 4.30 7.02 -13.05 -0.09 4.20 16 14 N -0.50 -9.54 11.55 -9.87 -0.11 -9.66 16 15 C 0.17 3.06 6.32 -156.37 -0.99 2.07 16 16 C 0.03 0.40 0.91 -154.55 -0.14 0.26 16 17 C -0.13 -1.64 8.13 37.15 0.30 -1.34 16 18 C -0.12 -1.44 6.09 -25.62 -0.16 -1.60 16 19 C -0.12 -1.19 6.83 -25.07 -0.17 -1.36 16 20 C -0.12 -1.11 6.91 -24.76 -0.17 -1.29 16 21 C -0.11 -1.23 5.88 -25.09 -0.15 -1.37 16 22 N -0.40 -7.56 10.68 30.90 0.33 -7.23 16 23 O 0.07 1.44 11.31 18.10 0.20 1.65 16 24 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.49 6.95 -51.93 -0.36 1.13 16 27 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.08 1.13 6.60 -51.93 -0.34 0.79 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.86 7.85 -51.93 -0.41 0.46 16 40 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 LS Contribution 325.85 15.07 4.91 4.91 Total: -1.00 -29.21 325.85 -7.45 -36.66 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.50 Total: -2.27 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.00 Total: -14.57 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.95 Total: -42.13 kcal Atomic # 8 Polarization: 1.44 SS G_CDS: 0.20 Total: 1.65 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.21 -7.45 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312948966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.622 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds