Wall clock time and date at job start Mon Mar 30 2020 07:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00084 * 2 1 4 4 H 1.48497 * 109.47387 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47557 * 119.99911 * 3 2 1 6 6 H 1.48509 * 109.47005 * 239.99746 * 3 2 1 7 7 C 1.37880 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00307 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99369 * 0.02562 * 7 2 1 10 10 H 1.08994 * 109.48803 * 35.27883 * 9 7 2 11 11 C 1.53089 * 109.48162 * 155.31228 * 9 7 2 12 12 C 1.53212 * 109.20903 * 62.05124 * 11 9 7 13 13 C 1.53244 * 109.00423 * 57.28542 * 12 11 9 14 14 C 1.52791 * 109.17968 * 303.58168 * 13 12 11 15 15 C 1.54190 * 109.57910 * 295.90126 * 14 13 12 16 16 C 1.55009 * 104.15706 * 264.01257 * 15 14 13 17 17 C 1.55052 * 102.85986 * 322.63385 * 16 15 14 18 18 C 1.52980 * 110.23586 * 178.86633 * 14 13 12 19 19 C 1.53658 * 110.69688 * 358.56494 * 18 14 13 20 20 C 1.55029 * 104.03366 * 215.58325 * 19 18 14 21 21 C 1.54936 * 102.83202 * 37.41232 * 20 19 18 22 22 C 1.53239 * 110.97050 * 239.59628 * 18 14 13 23 23 O 1.42560 * 110.30923 * 56.70328 * 14 13 12 24 24 H 0.96990 * 119.99873 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.51332 * 181.96412 * 11 9 7 26 26 H 1.09007 * 109.51083 * 302.11286 * 11 9 7 27 27 H 1.08998 * 109.54790 * 297.43333 * 12 11 9 28 28 H 1.08994 * 109.54792 * 177.14037 * 12 11 9 29 29 H 1.09002 * 109.51643 * 183.67352 * 13 12 11 30 30 H 1.08995 * 109.56495 * 63.52812 * 13 12 11 31 31 H 1.09000 * 110.49471 * 22.67587 * 15 14 13 32 32 H 1.08994 * 110.49903 * 145.34145 * 15 14 13 33 33 H 1.08997 * 110.73205 * 204.29084 * 16 15 14 34 34 H 1.08999 * 110.73628 * 80.97924 * 16 15 14 35 35 H 1.08997 * 110.52046 * 278.65941 * 17 16 15 36 36 H 1.08996 * 110.63641 * 155.98314 * 17 16 15 37 37 H 1.09005 * 110.51787 * 334.22051 * 19 18 14 38 38 H 1.09005 * 110.51865 * 96.94238 * 19 18 14 39 39 H 1.08995 * 110.74373 * 279.07261 * 20 19 18 40 40 H 1.09005 * 110.74077 * 155.74552 * 20 19 18 41 41 H 1.08999 * 110.48632 * 203.71989 * 21 20 19 42 42 H 1.09007 * 110.59491 * 81.14093 * 21 20 19 43 43 H 1.09005 * 110.08046 * 240.08093 * 22 18 14 44 44 H 1.08994 * 110.08034 * 1.58541 * 22 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2843 2.7465 -0.0006 5 1 3.1030 1.6965 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.3430 -2.3947 -0.5933 11 6 2.1315 -3.5972 -0.6017 12 6 3.3809 -3.7746 0.2671 13 6 2.9495 -4.1044 1.7002 14 6 2.0249 -3.0012 2.2125 15 6 2.8018 -1.6717 2.2929 16 6 3.2629 -1.5909 3.7706 17 6 2.0564 -2.1856 4.5417 18 6 1.5565 -3.3207 3.6334 19 6 2.1265 -4.6682 4.1029 20 6 0.9920 -5.2756 4.9673 21 6 -0.2875 -4.8505 4.2039 22 6 0.0291 -3.4265 3.6966 23 8 0.9054 -2.8502 1.3428 24 1 -0.4849 -0.8400 -0.0004 25 1 1.5746 -4.5336 -0.6340 26 1 2.4273 -3.3136 -1.6118 27 1 3.9612 -2.8519 0.2642 28 1 3.9871 -4.5897 -0.1279 29 1 3.8298 -4.1681 2.3399 30 1 2.4209 -5.0575 1.7120 31 1 3.6629 -1.6920 1.6250 32 1 2.1492 -0.8331 2.0504 33 1 3.4365 -0.5558 4.0646 34 1 4.1573 -2.1934 3.9293 35 1 1.2795 -1.4328 4.6750 36 1 2.3740 -2.5805 5.5067 37 1 2.3416 -5.3105 3.2488 38 1 3.0238 -4.5154 4.7027 39 1 1.0017 -4.8507 5.9710 40 1 1.0755 -6.3618 5.0060 41 1 -1.1452 -4.8340 4.8763 42 1 -0.4743 -5.5214 3.3653 43 1 -0.3690 -2.6853 4.3896 44 1 -0.3976 -3.2783 2.7047 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328210601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:24:11 Heat of formation + Delta-G solvation = -58.869567 kcal Electronic energy + Delta-G solvation = -22840.741338 eV Core-core repulsion = 19950.055366 eV Total energy + Delta-G solvation = -2890.685972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 264.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.39092 -37.20392 -34.10243 -32.81211 -32.59038 -29.62090 -28.27802 -28.10694 -26.03243 -23.79781 -22.88354 -22.21577 -20.75177 -19.84981 -18.68488 -17.78335 -16.36813 -15.89610 -15.36600 -14.54379 -14.04935 -13.87937 -13.66286 -13.52639 -13.41488 -12.91394 -12.76793 -12.47555 -11.97160 -11.61369 -11.52121 -11.19415 -10.90704 -10.81741 -10.78061 -10.54375 -10.45135 -10.22481 -10.20310 -10.14907 -9.88519 -9.75883 -9.70537 -9.66303 -9.39781 -9.18856 -8.54003 -8.28029 -7.74688 -6.35408 -4.02989 3.41048 3.42066 3.60338 4.49788 4.79256 4.96205 5.06115 5.14979 5.43150 5.52684 5.57905 5.67926 5.74026 5.75280 5.81235 5.92954 5.98772 6.06867 6.09090 6.14696 6.17829 6.23746 6.28185 6.29883 6.35095 6.43948 6.47268 6.51059 6.62497 6.64151 6.70695 6.76299 6.82550 6.89216 6.90841 7.00506 7.05925 7.15387 7.29798 7.51726 7.78943 8.12309 8.39363 8.81070 8.92148 9.63626 11.02343 Molecular weight = 264.18amu Principal moments of inertia in cm(-1) A = 0.022227 B = 0.008610 C = 0.008044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.431413 B = 3251.402543 C = 3480.034062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.030 3.970 3 Si 1.054 2.946 4 H -0.283 1.283 5 H -0.284 1.284 6 H -0.288 1.288 7 C -0.610 4.610 8 H 0.056 0.944 9 C 0.188 3.812 10 H 0.061 0.939 11 C -0.133 4.133 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.147 3.853 15 C -0.123 4.123 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.050 4.050 19 C -0.125 4.125 20 C -0.124 4.124 21 C -0.122 4.122 22 C -0.115 4.115 23 O -0.383 6.383 24 H 0.275 0.725 25 H 0.036 0.964 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -7.654 7.329 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.882 3.118 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.648 4.648 8 H 0.074 0.926 9 C 0.133 3.867 10 H 0.079 0.921 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.169 4.169 14 C 0.107 3.893 15 C -0.161 4.161 16 C -0.178 4.178 17 C -0.145 4.145 18 C -0.050 4.050 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.152 4.152 23 O -0.304 6.304 24 H 0.086 0.914 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.893 -6.038 7.374 10.295 hybrid contribution 0.605 -1.642 -0.130 1.755 sum 4.498 -7.680 7.245 11.476 Atomic orbital electron populations 1.70737 1.06913 1.31230 1.44567 1.25668 0.96455 1.02195 0.93340 0.83777 0.75250 0.76056 0.76720 1.20802 1.21059 1.21476 1.22355 0.94578 0.91968 1.55908 0.92585 1.19927 0.94782 0.91616 0.80383 0.92119 1.22052 0.97106 0.98969 0.98993 1.21592 0.97954 1.00549 0.95102 1.22211 0.99055 0.99047 0.96566 1.21039 0.86551 0.93219 0.88494 1.23440 1.00444 1.00324 0.91845 1.22755 0.96829 0.99346 0.98868 1.22440 0.98016 0.97094 0.96904 1.21217 0.95565 0.94226 0.93969 1.22771 0.97250 0.96674 0.99470 1.22519 0.95790 0.99248 0.98579 1.22384 0.96781 0.97841 0.98973 1.22157 0.94931 0.95032 1.03057 1.87772 1.30641 1.89940 1.22001 0.91370 0.94474 0.92582 0.91069 0.94234 0.92544 0.92333 0.91977 0.87493 0.92666 0.93112 0.91838 0.92771 0.90188 0.92298 0.92215 0.92519 0.92705 0.92153 0.92867 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.63 55.43 0.76 -25.41 16 2 C 0.03 0.82 4.57 -17.82 -0.08 0.74 16 3 Si 1.05 24.35 29.74 -169.99 -5.06 19.30 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.61 -15.66 4.71 -34.44 -0.16 -15.82 16 8 H 0.06 1.43 5.02 -52.49 -0.26 1.17 16 9 C 0.19 4.57 2.95 -27.83 -0.08 4.48 16 10 H 0.06 1.61 6.79 -51.93 -0.35 1.26 16 11 C -0.13 -2.79 5.62 -26.58 -0.15 -2.94 16 12 C -0.11 -2.18 5.62 -26.50 -0.15 -2.32 16 13 C -0.13 -2.38 3.47 -26.71 -0.09 -2.47 16 14 C 0.15 2.95 0.97 -90.12 -0.09 2.86 16 15 C -0.12 -2.60 3.83 -25.05 -0.10 -2.70 16 16 C -0.14 -2.48 6.92 -24.59 -0.17 -2.65 16 17 C -0.11 -1.81 5.74 -25.27 -0.15 -1.95 16 18 C -0.05 -0.87 0.81 -153.67 -0.12 -0.99 16 19 C -0.12 -1.85 4.87 -25.32 -0.12 -1.98 16 20 C -0.12 -1.65 6.91 -24.64 -0.17 -1.82 16 21 C -0.12 -1.81 6.84 -24.95 -0.17 -1.98 16 22 C -0.11 -2.04 5.98 -25.85 -0.15 -2.20 16 23 O -0.38 -8.99 7.61 -35.23 -0.27 -9.26 16 24 H 0.27 8.08 6.69 -40.82 -0.27 7.81 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 27 H 0.07 1.44 5.08 -51.93 -0.26 1.17 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.94 7.62 -51.93 -0.40 0.54 16 30 H 0.06 1.03 6.42 -51.93 -0.33 0.70 16 31 H 0.06 1.34 4.81 -51.93 -0.25 1.09 16 32 H 0.11 2.66 5.31 -51.93 -0.28 2.39 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.06 1.13 7.49 -51.93 -0.39 0.74 16 36 H 0.05 0.80 7.64 -51.93 -0.40 0.40 16 37 H 0.08 1.21 4.82 -51.93 -0.25 0.96 16 38 H 0.06 0.82 7.64 -51.93 -0.40 0.42 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 0.90 8.14 -51.92 -0.42 0.48 16 43 H 0.05 0.93 7.33 -51.93 -0.38 0.55 16 44 H 0.10 2.02 5.73 -51.93 -0.30 1.72 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -27.12 303.78 -9.07 -36.19 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.12 Total: 6.36 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: -1.96 Total: -31.75 kcal Atomic # 7 Polarization: -26.16 SS G_CDS: 0.76 Total: -25.41 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.27 Total: -9.26 kcal Atomic # 14 Polarization: 24.35 SS G_CDS: -5.06 Total: 19.30 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.12 -9.07 -36.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328210601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.684 kcal (2) G-P(sol) polarization free energy of solvation -27.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds